View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13458_low_1 (Length: 459)
Name: NF13458_low_1
Description: NF13458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13458_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 18 - 342
Target Start/End: Complemental strand, 2101408 - 2101063
Alignment:
| Q |
18 |
actatttataggcagatattagaatcgttttagcaagaaaatatctcttattttccgtttttaatgcaaaagtaaaatgaagagacttattgaagaagat |
117 |
Q |
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| T |
2101408 |
actatttataggcagatattagaatcgttttagcaagaaaatatgtcttattttccgtttttaatgcaaaagtaaaatgaagagacttatcgaagaagat |
2101309 |
T |
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| Q |
118 |
tgaaaagtaaactgccacggttacagatttattaccacaaactacagatttattacagtctacagtaaatcttatccgtttagatgct--ttttaagt-a |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |
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| T |
2101308 |
tgaaaagtaaactgccacggttacagatttattaccacaaactacagatttattacagtctacagtaaatcttatccgtttagatgctttttttaagtaa |
2101209 |
T |
|
| Q |
215 |
aagaacctgtgtgataa--tgtgtcattcatataaaatactacaaaggtgactgatgagcatagactatggtcagtatactg----------------ac |
296 |
Q |
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| T |
2101208 |
aagaagttgtgtgataatgtgtgtcattcatataagatactacaaaggtgactgatgagcatagactatggtcagtatactgtttacaacagtctacaac |
2101109 |
T |
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| Q |
297 |
gtatcagacattatattctaaagtatagactaatccttctacacat |
342 |
Q |
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| T |
2101108 |
gtatcagacattatattctaaagtatagaccaatccttctacacat |
2101063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 339 - 441
Target Start/End: Complemental strand, 2100997 - 2100895
Alignment:
| Q |
339 |
acattcaatcattgaagactagaatgattgaatggtttgtatattgtatgctacaatttacaggatattagacattgaatatttttgtacgtaaatcaaa |
438 |
Q |
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||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||||| ||| |||| |||| || |||||||||||| ||||| |||| |
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| T |
2100997 |
acattcaatcattgaagacaacaatgattgaatcgtttgtatattgtatgctacaatttccagcatatcagacgttcaatatttttgtatgtaaaccaaa |
2100898 |
T |
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| Q |
439 |
tat |
441 |
Q |
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||| |
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| T |
2100897 |
tat |
2100895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 177 - 282
Target Start/End: Original strand, 39186777 - 39186883
Alignment:
| Q |
177 |
ctacagtaaatcttatccgtttagatgcttttt-aagtaaa-gaacctgtgtgataatgtgtcattcatataaaatactacaaaggtgactgatgagcat |
274 |
Q |
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|||||||||||| |||| |||||||| |||||| ||||||| |||| ||||||||| ||||||||||| |||| ||||| ||||||||||| |||||||| |
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| T |
39186777 |
ctacagtaaatcctatctgtttagattcttttttaagtaaaagaacttgtgtgatactgtgtcattca-ataagatactgcaaaggtgactcatgagcat |
39186875 |
T |
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| Q |
275 |
agactatg |
282 |
Q |
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|||||||| |
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| T |
39186876 |
agactatg |
39186883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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