View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13458_low_4 (Length: 235)

Name: NF13458_low_4
Description: NF13458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13458_low_4
NF13458_low_4
[»] chr7 (2 HSPs)
chr7 (1-117)||(24097360-24097476)
chr7 (118-163)||(24097492-24097537)
[»] chr1 (2 HSPs)
chr1 (95-163)||(4865808-4865876)
chr1 (95-125)||(40800286-40800316)
[»] chr2 (1 HSPs)
chr2 (93-142)||(5164823-5164872)
[»] chr6 (1 HSPs)
chr6 (8-36)||(29705983-29706011)
[»] chr3 (1 HSPs)
chr3 (4-36)||(45850538-45850570)


Alignment Details
Target: chr7 (Bit Score: 101; Significance: 3e-50; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 24097360 - 24097476
Alignment:
Q  1 taatatatgttgtcatattatttaatgaattaaaaatatataacttgtcatactcattaattaatgcggtaagcaatttccttgagcataaattagttga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||    
T  24097360 taatatatgttgtcatattatttaatgaattaaaaatatataacttgtcatactcattaaataatgtggtaagcaatttccttgagcataaataagttga 24097459  T
Q  101 tagagacattgcattat 117  Q
    |||||||||| ||||||    
T  24097460 tagagacattacattat 24097476  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 163
Target Start/End: Original strand, 24097492 - 24097537
Alignment:
Q  118 atatgtagaagtcggatttcaaaccctgaacactccacttattcac 163  Q
    ||||||||| | |||||||| || ||||||||||||||||||||||    
T  24097492 atatgtagaggccggatttctaatcctgaacactccacttattcac 24097537  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 163
Target Start/End: Complemental strand, 4865876 - 4865808
Alignment:
Q  95 agttgatagagacattgcattatatatgtagaagtcggatttcaaaccctgaacactccacttattcac 163  Q
    ||||| ||| |||||||||| ||||||||||  |||||| ||| ||||| ||||||||||||| |||||    
T  4865876 agttggtagggacattgcataatatatgtaggggtcggagttcgaaccccgaacactccacttcttcac 4865808  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 125
Target Start/End: Complemental strand, 40800316 - 40800286
Alignment:
Q  95 agttgatagagacattgcattatatatgtag 125  Q
    |||||||||||||||||||||||||||||||    
T  40800316 agttgatagagacattgcattatatatgtag 40800286  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 142
Target Start/End: Original strand, 5164823 - 5164872
Alignment:
Q  93 ttagttgatagagacattgcattatatatgtagaagtcggatttcaaacc 142  Q
    |||||||||||||| ||||||||||||||||||  |||||| ||| ||||    
T  5164823 ttagttgatagagatattgcattatatatgtaggggtcggaattcgaacc 5164872  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 36
Target Start/End: Complemental strand, 29706011 - 29705983
Alignment:
Q  8 tgttgtcatattatttaatgaattaaaaa 36  Q
    |||||||||||||||||||||||||||||    
T  29706011 tgttgtcatattatttaatgaattaaaaa 29705983  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 36
Target Start/End: Complemental strand, 45850570 - 45850538
Alignment:
Q  4 tatatgttgtcatattatttaatgaattaaaaa 36  Q
    |||||||||||| ||||||||||||||||||||    
T  45850570 tatatgttgtcacattatttaatgaattaaaaa 45850538  T

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