View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1345_high_109 (Length: 395)
Name: NF1345_high_109
Description: NF1345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1345_high_109 |
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Alignment Details
Target: chr3 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 11 - 366
Target Start/End: Complemental strand, 40729129 - 40728774
Alignment:
| Q |
11 |
cataggtagccattgaagaaaaacaaaaccatggatagagaacaagaagagatgcaatttctaggactctttggaatctacaaagaatcctacaagatca |
110 |
Q |
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| T |
40729129 |
cataggtagccattgaagaaaaacaaaaccatggatagagaacaagaagagatgcaatttctaggactctttggaatctacaaagaatcctacaagatca |
40729030 |
T |
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| Q |
111 |
taatttcatggaggaaaatcttcagccaaatcaccttaactctcatcctccctctttccttcatcttccttattcacatacaaatatccaacatcctctt |
210 |
Q |
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| T |
40729029 |
taatttcatggaggaaaatcttcagccaaatcaccttaactctcatcctccctctttccttcatcttccttattcacatacaaatatccaacatcctctt |
40728930 |
T |
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| Q |
211 |
cagaaagattatgaacaacacaaatgaaattttggaaacacaacaaggcacacctcaataccaaaaactttccgacataatcacttccgaatggaccact |
310 |
Q |
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| T |
40728929 |
cagaaagattatgaacaacacaaatgaaattttggaaacacaacaaggcacacctcaataccaaaaactttccgacataatcacttccgaatggaccact |
40728830 |
T |
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| Q |
311 |
ttcttgctctttaaacttgtttacttcacttctcttctaatcttctctttgctatc |
366 |
Q |
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| T |
40728829 |
ttcttgctctttaaacttgtttacttcacttctcttctaatcttctctttgctatc |
40728774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 79; Significance: 8e-37; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 30 - 180
Target Start/End: Original strand, 10107232 - 10107382
Alignment:
| Q |
30 |
aaaacaaaaccatggatagagaacaagaagagatgcaatttctaggactctttggaatctacaaagaatcctacaagatcataatttcatggaggaaaat |
129 |
Q |
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|||||||||||||||| | |||||||||||| ||||||||||| || ||||||| |||||||||||||| |||||||||| |||||||||| ||||| |
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| T |
10107232 |
aaaacaaaaccatggacaaagaacaagaagacatgcaatttcttggtttctttggttgctacaaagaatccttcaagatcatattttcatggagaaaaat |
10107331 |
T |
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| Q |
130 |
cttcagccaaatcaccttaactctcatcctccctctttccttcatcttcct |
180 |
Q |
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| T |
10107332 |
cttcacacaaatcaccttaactcttctcctacctctctccttcatcttcct |
10107382 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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