View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1345_high_111 (Length: 393)
Name: NF1345_high_111
Description: NF1345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1345_high_111 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 17 - 393
Target Start/End: Original strand, 47127729 - 47128108
Alignment:
| Q |
17 |
cagagatagccgatgaacgattgcagtattggatcgatcataactctaagacacctacctcacaagacgcagttgacggtattgtcaatctcattcatcc |
116 |
Q |
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| T |
47127729 |
cagagatagccgatgagcgattgcagtattggatcgatcataactctaagacacctacctcacaagatgcagttgacggtattgtcaatctcattcaccc |
47127828 |
T |
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| Q |
117 |
tatatattttagtttgattcaaatcttaatcactattacagtataggttccatcatatcgacnnnnnnnnnctgaaaattaagacaatatttacctattt |
216 |
Q |
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| T |
47127829 |
tatatattttagtttgattcaaatcttaatcactattacagtataggttccatcatatcgacttttttt--ctgaaaattaagacaatatttacctattt |
47127926 |
T |
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| Q |
217 |
tagttctgtctcactatttaaacataacttgtattttgtacttttacattgcacaataaaaaatcgtgat----ttcatgtgatttaatatttatctatt |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
47127927 |
tagttctgtctcactatttaaacataacttgtattttgtacttttacattgcacaataaaaaatcgtgatttcattcatgtgatttaatatttatctatt |
47128026 |
T |
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| Q |
313 |
tactttagatttatgtttg-ttgtttaacatatttcttgtgcagttgaacgtggacttgcagagattaggaagttgggtatt |
393 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47128027 |
tactttagatttatgtttgtttgtttaacatatttcttgtgcagttgaacgtggacttgcagagattaggaagttgggtatt |
47128108 |
T |
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