View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1345_high_114 (Length: 384)

Name: NF1345_high_114
Description: NF1345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1345_high_114
NF1345_high_114
[»] chr2 (14 HSPs)
chr2 (1-357)||(35371397-35371765)
chr2 (107-351)||(35374296-35374543)
chr2 (26-300)||(35355526-35355808)
chr2 (4-300)||(35348166-35348465)
chr2 (17-300)||(35343475-35343770)
chr2 (12-304)||(35345904-35346205)
chr2 (90-345)||(35368116-35368378)
chr2 (106-306)||(35364257-35364469)
chr2 (194-300)||(35335584-35335699)
chr2 (90-159)||(35335492-35335561)
chr2 (94-159)||(35351004-35351069)
chr2 (90-159)||(35340577-35340647)
chr2 (299-351)||(35348060-35348112)
chr2 (315-351)||(35355880-35355916)
[»] chr4 (2 HSPs)
chr4 (108-254)||(9077306-9077454)
chr4 (117-159)||(9063712-9063754)


Alignment Details
Target: chr2 (Bit Score: 312; Significance: 1e-176; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 357
Target Start/End: Original strand, 35371397 - 35371765
Alignment:
Q  1 caataacaaactaatagttaagtactaatttcgaactatattaatcgactaccaactatatctttaatatgctataaagctaactagaagactaatgtaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35371397 caataacaaactaatagttaagtactaatttcgaactatattaatcgactaccaactatatctttaatatgctataaagctaactagaagactaatgtaa 35371496  T
Q  101 gttatcacattagagttttaggcagcgggagcatagtcataaccaccgtcgtcgtcatcg------------ccttccttgcatgagtctcgatctccat 188  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||            ||||||||||||||||||||||||||||    
T  35371497 gttaacacattagagttttaggcagcgggagcatagtcataaccaccgtcgtcgtcgtcgtcatcgtcgtcgccttccttgcatgagtctcgatctccat 35371596  T
Q  189 tgcggtaatcttcttcaatgcaagatacacttgtataatcaaaccaattaccttcaccatatgcatgttgcttgcactttagagcaatgaccatcaaaat 288  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  35371597 tgcggtaatcttcttcaatgcaagatacacttgtataatcaaaccaattaccttcaccatatacatgttgcttgcactttagagcaatgaccatcaaaat 35371696  T
Q  289 ggatgccattttagttatatgagatgctaacgtaattgtgtgagttgagttgtgtttgagttataattg 357  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  35371697 ggatgccattttagttatatgagatgctaacgtaattgtgtgagttgagttgtgtttgagttagaattg 35371765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 107 - 351
Target Start/End: Original strand, 35374296 - 35374543
Alignment:
Q  107 acattagagttttaggcagcgggagcatagtcataaccaccgtcgtcgtcatcg---ccttccttgcatgagtctcgatctccattgcggtaatcttctt 203  Q
    |||||||||||||| ||||||||||||||||||||||||||||| ||||||||    ||||||| | | || ||||| ||||| ||  | ||||||||||    
T  35374296 acattagagttttatgcagcgggagcatagtcataaccaccgtcatcgtcatcatcaccttcctggtaagaatctcggtctccgttatgataatcttctt 35374395  T
Q  204 caatgcaagatacacttgtataatcaaaccaattaccttcaccatatgcatgttgcttgcactttagagcaatgaccatcaaaatggatgccattttagt 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  |||||||||||||||||||    
T  35374396 caatgcaagatacacttgtataatcaaaccaattaccttcaccatatgcatgttgcttgcagtttagagcaatgaccatggaaatggatgccattttagt 35374495  T
Q  304 tatatgagatgctaacgtaattgtgtgagttgagttgtgtttgagtta 351  Q
    ||||||||||||||| |||||||||||||||||| |||||||||||||    
T  35374496 tatatgagatgctaatgtaattgtgtgagttgagctgtgtttgagtta 35374543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 26 - 300
Target Start/End: Original strand, 35355526 - 35355808
Alignment:
Q  26 taatttcgaactatattaatcgactaccaactatatctttaatatgctataaagctaactagaagactaatgtaagttatcacattagagttttaggcag 125  Q
    ||||||||||||||||||| ||||||  ||||||||||| ||||||||||||  ||||||||  |||| |||||||||| ||||||||||||||||||||    
T  35355526 taatttcgaactatattaaacgactattaactatatcttcaatatgctataatactaactagt-gacttatgtaagttaacacattagagttttaggcag 35355624  T
Q  126 cgggagcatagtcataaccaccgtcgtcgtcat---cgccttccttgcatgagtctcgatctccattgcggtaatcttcttcaatgcaagatacacttgt 222  Q
    | ||||||||||||||||||||||| |||||||   |||||||| || | |||||||||||||||||||| ||||||||||||||||||||||||  |||    
T  35355625 caggagcatagtcataaccaccgtcatcgtcatcatcgccttccatgtaagagtctcgatctccattgcgataatcttcttcaatgcaagatacatatgt 35355724  T
Q  223 ataatcaaacca------attaccttcaccatatgcatgttgcttgcactttagagcaatgaccatcaaaatggatgccatttt 300  Q
    |||| |||||||      |||||||||| ||||| |||| | |||||||||| ||| |||| ||||  |||| |||||||||||    
T  35355725 ataaccaaaccaatcaccattaccttcatcatatccatgctccttgcactttggagtaatggccatagaaattgatgccatttt 35355808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 4 - 300
Target Start/End: Complemental strand, 35348465 - 35348166
Alignment:
Q  4 taacaaactaatagttaagtactaatttcgaactatattaatcgactaccaactatatctttaatatgctataaagctaactagaagactaatgtaagtt 103  Q
    |||||||| |||||||||||||||| ||||||| |||   | ||||||     |||||||| ||||||||||||  ||||||||||||||||||||||||    
T  35348465 taacaaacaaatagttaagtactaaattcgaacaata---aacgactata---tatatcttcaatatgctataatcctaactagaagactaatgtaagtt 35348372  T
Q  104 atcacattagagttttaggcagcgggagcatagtcataaccac---cgtcgtcgtcatcgccttccttgcatgagtctcgatctccattgcggtaatctt 200  Q
    | |||||||||||||||||||| |||||||||||| |||||||   | ||||| ||||| |||||||||||||||||||||||||||||||| | |||||    
T  35348371 aacacattagagttttaggcagtgggagcatagtcgtaaccaccatcatcgtcatcatcaccttccttgcatgagtctcgatctccattgcgattatctt 35348272  T
Q  201 cttcaatgcaagatacacttgtataatcaaaccaa------ttaccttcaccatatgcatgttgcttgcactttagagcaatgaccatcaaaatggatgc 294  Q
    ||| |||||||||||||||||||||| ||||||||      ||||||||||  ||| |||| |||||||||||| ||| |||  |||   ||||||||||    
T  35348271 ctttaatgcaagatacacttgtataaccaaaccaatcaccgttaccttcactgtatccatgatgcttgcactttggagtaatagccaaagaaatggatgc 35348172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 17 - 300
Target Start/End: Complemental strand, 35343770 - 35343475
Alignment:
Q  17 gttaagtactaatttcgaactatattaatcgactaccaactatatctttaatatgctataaag---ctaactagaagactaatgtaagttatcacattag 113  Q
    ||||||| ||||||||||||| |||||| ||||||| ||||||||||| |||||||| ||||    ||||||||||||||||||||||||| ||||||||    
T  35343770 gttaagttctaatttcgaactttattaaacgactactaactatatcttcaatatgctgtaaatatcctaactagaagactaatgtaagttaacacattag 35343671  T
Q  114 agttttaggcagcgggagcatagtcataaccaccgtcgtcgtcatc---gccttccttgcatgagtctcgatctccattgcggtaatcttcttcaatgca 210  Q
     ||||||||| || ||||||||||| |||||||| || ||||||||   |||||| |||||||||||||||||||||||| | |||| ||||||||||||    
T  35343670 tgttttaggcggctggagcatagtcgtaaccaccatcatcgtcatcatcgccttctttgcatgagtctcgatctccattgtgataattttcttcaatgca 35343571  T
Q  211 agatacacttgtataatcaaaccaa------ttaccttcaccatatgcatgttgcttgcactttagagcaatgaccatcaaaatggatgccatttt 300  Q
    |||||||| |||||||  || ||||      ||||||||||||||| |||| |||| ||||||| ||  |||| |||   ||||||||||||||||    
T  35343570 agatacacatgtataactaatccaatcaccgttaccttcaccatatccatgctgctcgcactttggaataatggccaaagaaatggatgccatttt 35343475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 12 - 304
Target Start/End: Original strand, 35345904 - 35346205
Alignment:
Q  12 taatagttaagtactaatttcgaactatattaatcgactaccaactatatctttaatatgctataaagctaactagaagactaatgtaagttatcacatt 111  Q
    ||||||||||||||||||||  ||||||||||| ||||||| ||||||||||| |||| ||| | |   ||||||  | ||| |||||||||| ||||||    
T  35345904 taatagttaagtactaatttttaactatattaaacgactactaactatatcttcaataggctttgatattaactactatacttatgtaagttaacacatt 35346003  T
Q  112 agagttttaggcagcgggagcatagtcataaccac---cgtcgtcgtcatcgccttccttgcatgagtctcgatctccattgcggtaatcttcttcaatg 208  Q
    ||||||||| |||||||||||||||||||||||||   | ||||| ||||||||||||||| | || ||| |||| |||||||| ||||||||| ||||     
T  35346004 agagttttacgcagcgggagcatagtcataaccaccatcatcgtcatcatcgccttccttgtaagaatcttgatccccattgcgataatcttctacaata 35346103  T
Q  209 caagatacacttgtataatcaaaccaa------ttaccttcaccatatgcatgttgcttgcactttagagcaatgaccatcaaaatggatgccattttag 302  Q
    |||||||||  ||||||| ||||||||      || ||||||||| ||||||  |||||||||  | ||||||||||| | |||||||||||||||||||    
T  35346104 caagatacagatgtataaccaaaccaatcaccgttgccttcaccacatgcattctgcttgcacaatggagcaatgaccgtgaaaatggatgccattttag 35346203  T
Q  303 tt 304  Q
    ||    
T  35346204 tt 35346205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 90 - 345
Target Start/End: Original strand, 35368116 - 35368378
Alignment:
Q  90 gactaatgtaagttatcacattagagttttaggcagcgggagcatagtcataaccaccg---tcgtcgtcatcgccttccttgcatgagtctcgatctcc 186  Q
    ||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||   ||||||||||||||||||    | || ||  ||||       
T  35368116 gactaatgtaagttaacacattagagttttatgcagcgggagcatagtcataaccaccgtcatcgtcgtcatcgccttcccaataagaatcatgatccgt 35368215  T
Q  187 attgcggtaatcttcttcaatgcaagatacacttgtataatcaaaccaa------ttaccttcaccatatgcatgttgcttgcactttagagcaatgacc 280  Q
     ||  | |||||||||||||| |||||||||  |||| || ||||||||      | |||||||||||||||||| |||||||| |||||||||||||||    
T  35368216 gttatgataatcttcttcaatacaagatacagatgtacaaccaaaccaatcaacttcaccttcaccatatgcatgctgcttgcagtttagagcaatgacc 35368315  T
Q  281 atcaaaatggatgccattttagttatatgagatgctaacgtaattgtgtgagttgagttgtgttt 345  Q
    ||  ||||| || |||  |||||||||| | ||||||| ||| ||||||||||||||||||||||    
T  35368316 atggaaatgaatacca--ttagttatattatatgctaaggtagttgtgtgagttgagttgtgttt 35368378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 106 - 306
Target Start/End: Original strand, 35364257 - 35364469
Alignment:
Q  106 cacattagagttttaggcagcgggagcatagtcataaccaccg---tcgtcgtcatcgccttccttgcatgagtctcgatctccattgcggtaatcttct 202  Q
    ||||||||||||||| |||||||||||||||||||||||||||   |||||||||||||||||| || || | | |||||| || |||   |||||||||    
T  35364257 cacattagagttttatgcagcgggagcatagtcataaccaccgtcatcgtcgtcatcgccttccctgtataaatttcgatccccgttggtataatcttct 35364356  T
Q  203 tcaatgcaagatacacttgtataatcaaaccaattaccttcacc---------atatgcatgttgcttgcactttagagcaatgaccatcaaaatggatg 293  Q
    ||||||||||||||||  |||||| | ||||||| ||| |||||         |||||||| ||||||||||||| ||||||||||| |  ||||| |||    
T  35364357 tcaatgcaagatacacacgtataaccgaaccaatcaccgtcaccttcaccattatatgcatattgcttgcactttggagcaatgaccgtggaaatgaatg 35364456  T
Q  294 ccattttagttat 306  Q
     |||||| |||||    
T  35364457 tcattttggttat 35364469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 194 - 300
Target Start/End: Original strand, 35335584 - 35335699
Alignment:
Q  194 taatcttcttcaatgcaagatacacttgtataatcaaaccaattac------cttcaccat---atgcatgttgcttgcactttagagcaatgaccatca 284  Q
    |||||||||||||||||||||| | |||| ||| ||||||||| ||      ||||||| |   |||||||||||||||||||| |||||||||||||      
T  35335584 taatcttcttcaatgcaagatatatttgtgtaaccaaaccaatcacagtcgccttcaccgttaaatgcatgttgcttgcactttggagcaatgaccatgg 35335683  T
Q  285 aaatggatgccatttt 300  Q
    ||||||||||||||||    
T  35335684 aaatggatgccatttt 35335699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 90 - 159
Target Start/End: Original strand, 35335492 - 35335561
Alignment:
Q  90 gactaatgtaagttatcacattagagttttaggcagcgggagcatagtcataaccaccgtcgtcgtcatc 159  Q
    ||||||||||||||| |||||||    |||| |||||||||||||||||||||||||||||||| |||||    
T  35335492 gactaatgtaagttaacacattactactttatgcagcgggagcatagtcataaccaccgtcgtcatcatc 35335561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 94 - 159
Target Start/End: Original strand, 35351004 - 35351069
Alignment:
Q  94 aatgtaagttatcacattagagttttaggcagcgggagcatagtcataaccaccgtcgtcgtcatc 159  Q
    ||||||||||| ||||||||||| ||| ||||||||||| |||||||||||||| || ||||||||    
T  35351004 aatgtaagttagcacattagagtcttatgcagcgggagcgtagtcataaccaccatcatcgtcatc 35351069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 90 - 159
Target Start/End: Original strand, 35340577 - 35340647
Alignment:
Q  90 gactaatgtaagttatcacattagagtttt-aggcagcgggagcatagtcataaccaccgtcgtcgtcatc 159  Q
    ||||||| ||||||  |||||||||||||| | ||||| |||||||||||||||||||| |||||||||||    
T  35340577 gactaatataagttcacacattagagtttttatgcagctggagcatagtcataaccaccatcgtcgtcatc 35340647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 299 - 351
Target Start/End: Complemental strand, 35348112 - 35348060
Alignment:
Q  299 ttagttatatgagatgctaacgtaattgtgtgagttgagttgtgtttgagtta 351  Q
    |||||||||||| ||||||| ||| |||||||||||||| |||||||||||||    
T  35348112 ttagttatatgatatgctaaggtagttgtgtgagttgagctgtgtttgagtta 35348060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 315 - 351
Target Start/End: Original strand, 35355880 - 35355916
Alignment:
Q  315 ctaacgtaattgtgtgagttgagttgtgtttgagtta 351  Q
    |||| ||| ||||||||||||||||||||||||||||    
T  35355880 ctaaggtagttgtgtgagttgagttgtgtttgagtta 35355916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 108 - 254
Target Start/End: Complemental strand, 9077454 - 9077306
Alignment:
Q  108 cattagagttttaggcagcgggagcatagtcataaccaccgtcgtcgtcatcg---ccttccttgcatgagtctcgatctccattgcggtaatcttcttc 204  Q
    ||||||||||| || | ||||||||||| |||||| |||| |||||||||||    |||||| || |||| |||  ||||||| || |||||||||| ||    
T  9077454 cattagagtttaag-cggcgggagcataatcataatcaccatcgtcgtcatcatcaccttccctgtatgaatctacatctccagtgtggtaatcttcatc 9077356  T
Q  205 aatgcaagatacacttgtataatcaaaccaattaccttcaccatatgcat 254  Q
    | |||||||||||  || | || ||||||| | |||||||||| ||||||    
T  9077355 attgcaagatacagatgcaaaaccaaaccattcaccttcaccacatgcat 9077306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 117 - 159
Target Start/End: Complemental strand, 9063754 - 9063712
Alignment:
Q  117 tttaggcagcgggagcatagtcataaccaccgtcgtcgtcatc 159  Q
    |||| |||||||||||||||||||||||||| || ||||||||    
T  9063754 tttaagcagcgggagcatagtcataaccaccatcatcgtcatc 9063712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University