View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1345_high_12 (Length: 710)
Name: NF1345_high_12
Description: NF1345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1345_high_12 |
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| [»] scaffold0060 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 300; Significance: 1e-168; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 1 - 336
Target Start/End: Complemental strand, 32643627 - 32643292
Alignment:
| Q |
1 |
ttcttatcaatttggttttgagcactttgcttctattctacttctcgttttacacatccataaggaatgtgataagcgaattggagaaaactcgaagaag |
100 |
Q |
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| T |
32643627 |
ttcttatcaatttggttttgagcactttgcttctattctacttctcattttacacatccataaggaatgtgataagagaattggagaaaactcaaagaag |
32643528 |
T |
|
| Q |
101 |
ggttaacgggttggaaaatagaactattagatgggttggttggaagaagggggtggcggactttgtgtaaaagagtagacatatttgattaatttgtatt |
200 |
Q |
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| T |
32643527 |
ggttaacgggttggaaaatataactattagatgggttggttggaagaagggggtggaagactttgtgtaaaagagtagacatatttgattaatttgtatt |
32643428 |
T |
|
| Q |
201 |
tgttgagtaagtggtcgtggaggaacgtgtcagactccaaggctatttgaaagggactttaaattataggtatggcctagtggaagaaaaacttcttaat |
300 |
Q |
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| T |
32643427 |
tgttgagtaagtggtcgtggaggaacgtgtcagactccaaggctatttaaaaggaactttaaattataggtatggcctagtggaagaaaaacttcttaat |
32643328 |
T |
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| Q |
301 |
ccggaaggaaacacttgtggtaggatggattcattg |
336 |
Q |
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| T |
32643327 |
ctggaaggaaacacttgtggtaggatggattcattg |
32643292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 452 - 681
Target Start/End: Complemental strand, 32641911 - 32641682
Alignment:
| Q |
452 |
tgtacatacattctaatttatttatgatcagatttcttgttttgtgttaagctaatcaagaactggtctatgatactaatattccaacacctgctaattt |
551 |
Q |
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| T |
32641911 |
tgtacatacattctaatttatttatgatcaaatttcttgttttgtgttaagctaatcaagaactggtctatgatactaatattccaacacctgctaattt |
32641812 |
T |
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| Q |
552 |
gctaatgaatcgaggcaaccattctgacattacttctaaagttgaagcatattgaactcatgttacaattaaacaaacatggaaaaattgggtgttcgac |
651 |
Q |
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| T |
32641811 |
gctaatgaatctaggccaccattctaacattacttctaaagttgaagcatattgaactcatgttacaaataaacaaacatggaaaaattggatgttcgac |
32641712 |
T |
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| Q |
652 |
ccaaaattcaatgatgacaagtcttgttag |
681 |
Q |
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| T |
32641711 |
ccagaattcaatgataacaagtcttgttag |
32641682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 312 - 445
Target Start/End: Complemental strand, 32643271 - 32643138
Alignment:
| Q |
312 |
cacttgtggtaggatggattcattggaaataaattgtttctctaatgttatcctaaacgagttgagaaatggcaagaacatttcattttggatggatttt |
411 |
Q |
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| T |
32643271 |
cacttgtggtaggatggattcattggaaataaattgtttctctaatgttatccgaaaagagttgagaaatggcaagaacatttcattttggatggatttt |
32643172 |
T |
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| Q |
412 |
tggctcggagagcagccttttaatctgaattttc |
445 |
Q |
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| T |
32643171 |
tggctcggagagcagccttttaatctgaattttc |
32643138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 84; Significance: 2e-39; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 500 - 647
Target Start/End: Complemental strand, 8303200 - 8303053
Alignment:
| Q |
500 |
aagctaatcaagaactggtctatgatactaatattccaacacctgctaatttgctaatgaatcgaggcaaccattctgacattacttctaaagttgaagc |
599 |
Q |
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|||||||||||| |||| |||| | |||||||||||||||||||| ||||||||| |||||| |||| |||||| | |||||||||||||||||||||| |
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| T |
8303200 |
aagctaatcaaggactgatctaggttactaatattccaacacctgaaaatttgctagtgaatctaggccaccattataacattacttctaaagttgaagc |
8303101 |
T |
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| Q |
600 |
atattgaactcatgttacaattaaacaaacatggaaaaattgggtgtt |
647 |
Q |
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| T |
8303100 |
atattaagctcttgttacaaataaacaaacatgcaaaaattgggtgtt |
8303053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0060 (Bit Score: 46; Significance: 7e-17; HSPs: 1)
Name: scaffold0060
Description:
Target: scaffold0060; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 526 - 623
Target Start/End: Original strand, 62383 - 62480
Alignment:
| Q |
526 |
actaatattccaacacctgctaatttgctaatgaatcgaggcaaccattctgacattacttctaaagttgaagcatattgaactcatgttacaattaa |
623 |
Q |
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|||||||||| ||||||||||||| ||| ||| |||| |||| |||||||| ||||||||| | | | ||||||||||| ||||| |||||||||||| |
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| T |
62383 |
actaatattcaaacacctgctaatatgcaaataaatctaggctaccattctaacattacttgtgaggatgaagcatattcaactcttgttacaattaa |
62480 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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