View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1345_high_124 (Length: 368)

Name: NF1345_high_124
Description: NF1345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1345_high_124
NF1345_high_124
[»] chr4 (6 HSPs)
chr4 (69-280)||(28287340-28287550)
chr4 (62-178)||(18490147-18490263)
chr4 (72-144)||(2879842-2879914)
chr4 (77-180)||(54239210-54239313)
chr4 (115-247)||(34943755-34943887)
chr4 (82-156)||(24414339-24414413)
[»] chr3 (7 HSPs)
chr3 (61-193)||(1150795-1150927)
chr3 (61-180)||(34723483-34723602)
chr3 (88-167)||(20398800-20398879)
chr3 (83-154)||(24517481-24517552)
chr3 (82-115)||(24516652-24516685)
chr3 (61-149)||(1697416-1697504)
chr3 (61-149)||(33620421-33620509)
[»] chr7 (4 HSPs)
chr7 (69-200)||(32052640-32052771)
chr7 (61-135)||(11737531-11737605)
chr7 (69-157)||(32937136-32937224)
chr7 (61-156)||(721887-721982)
[»] chr5 (3 HSPs)
chr5 (61-156)||(14503725-14503820)
chr5 (64-242)||(7775006-7775184)
chr5 (80-168)||(35161122-35161210)
[»] chr8 (8 HSPs)
chr8 (61-154)||(9295005-9295098)
chr8 (69-180)||(16848323-16848434)
chr8 (75-168)||(2262364-2262457)
chr8 (61-168)||(15081164-15081270)
chr8 (61-99)||(6990238-6990276)
chr8 (83-185)||(29019486-29019588)
chr8 (83-175)||(38082457-38082549)
chr8 (320-348)||(2262598-2262626)
[»] chr1 (5 HSPs)
chr1 (61-200)||(13193187-13193326)
chr1 (61-149)||(28260507-28260595)
chr1 (61-148)||(45085332-45085419)
chr1 (84-141)||(22169621-22169678)
chr1 (64-242)||(11923479-11923657)
[»] chr6 (5 HSPs)
chr6 (82-166)||(10779518-10779602)
chr6 (88-179)||(19475010-19475101)
chr6 (64-242)||(8568913-8569091)
chr6 (79-180)||(13394565-13394666)
chr6 (61-113)||(2339503-2339555)
[»] chr2 (2 HSPs)
chr2 (100-200)||(5840739-5840838)
chr2 (89-149)||(8781127-8781187)


Alignment Details
Target: chr4 (Bit Score: 172; Significance: 2e-92; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 69 - 280
Target Start/End: Original strand, 28287340 - 28287550
Alignment:
Q  69 caaactggctgcacgtattgaagatgaagtggcgcgcaagaaatgttcaatgagaatggtgcagatttgacatccggtgtctgattgatttgaattatac 168  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||| |||||||||    
T  28287340 caaactggctgcacgtattgaagatgaagttgcgcgcaagaaatgttcaatgaaaatggtgcagatttgatatctggtgtctgattgattcgaattatac 28287439  T
Q  169 atcttcggaaagagaatttgctcacaagcatatctcaaggtttctccatgatgtaggggtgaatttagtcattccaagttataaaatcagatttttattt 268  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || ||||||||||    
T  28287440 attttcggaaagagaatttgctcacaagcatatctcaaggtttctccatgatgta-gggtgaatttagtcattccaagttataaaaccatatttttattt 28287538  T
Q  269 tttcagcacaac 280  Q
    ||||||||||||    
T  28287539 tttcagcacaac 28287550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 62 - 178
Target Start/End: Original strand, 18490147 - 18490263
Alignment:
Q  62 atgtagccaaactggctgcacgtattgaagatgaagtggcgcgcaagaaatgttcaatgagaatggtgcagatttgacatccggtgtctgattgatttga 161  Q
    |||||| ||| || ||||||||||||||||||||| || |||||||||||||||||||| |||| || ||||||||| |||  |||||| ||||| |  |    
T  18490147 atgtaggcaagctagctgcacgtattgaagatgaaatgacgcgcaagaaatgttcaatgggaatagtacagatttgatatctagtgtctaattgactcaa 18490246  T
Q  162 attatacatcttcggaa 178  Q
    ||||||| | |||||||    
T  18490247 attataccttttcggaa 18490263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 72 - 144
Target Start/End: Original strand, 2879842 - 2879914
Alignment:
Q  72 actggctgcacgtattgaagatgaagtggcgcgcaagaaatgttcaatgagaatggtgcagatttgacatccg 144  Q
    ||||||||||||||||||||| ||||||||||| |||||| | |||||| |||| ||||| ||||| ||||||    
T  2879842 actggctgcacgtattgaagacgaagtggcgcgtaagaaaggctcaatgggaatagtgcaaatttggcatccg 2879914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 77 - 180
Target Start/End: Original strand, 54239210 - 54239313
Alignment:
Q  77 ctgcacgtattgaagatgaagtggcgcgcaagaaatgttcaatgagaatggtgcagatttgacatccggtgtctgattgatttgaattatacatcttcgg 176  Q
    ||||| |||| |||||||||||| ||||||||||||| ||||||| ||| ||| ||||||||||| ||  ||| |||||| |  |||||||||| ||| |    
T  54239210 ctgcatgtatcgaagatgaagtgacgcgcaagaaatgctcaatgaaaatagtgtagatttgacattcgaagtcggattgactcaaattatacattttcag 54239309  T
Q  177 aaag 180  Q
    ||||    
T  54239310 aaag 54239313  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 115 - 247
Target Start/End: Complemental strand, 34943887 - 34943755
Alignment:
Q  115 tcaatgagaatggtgcagatttgacatccggtgtctgattgatttgaattatacatcttcggaaagagaatttgctcacaagcatatctcaaggtttctc 214  Q
    |||||| |||| ||||| ||||| |||||||| || ||||||||  |||| ||| | ||||| |||||||||||| |||||||||| ||||  | |||      
T  34943887 tcaatgggaatagtgcatatttggcatccggtctccgattgattcaaattgtaccttttcgggaagagaatttgcccacaagcataactcatcgcttcgt 34943788  T
Q  215 catgatgtaggggtgaatttagtcattccaagt 247  Q
    | ||||| |||||| ||||||| ||||| ||||    
T  34943787 cgtgatgcaggggtaaatttagccattcgaagt 34943755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 156
Target Start/End: Complemental strand, 24414413 - 24414339
Alignment:
Q  82 cgtattgaagatgaagtggcgcgcaagaaatgttcaatgagaatggtgcagatttgacatccggtgtctgattga 156  Q
    ||||| |||||||||||||||||||||||||| ||| |  |||| ||| |||||||| ||| | |||| ||||||    
T  24414413 cgtatagaagatgaagtggcgcgcaagaaatgctcacttggaatagtgtagatttgatatctgatgtcggattga 24414339  T

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Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 61 - 193
Target Start/End: Original strand, 1150795 - 1150927
Alignment:
Q  61 gatgtagccaaactggctgcacgtattgaagatgaagtggcgcgcaagaaatgttcaatgagaatggtgcagatttgacatccggtgtctgattgatttg 160  Q
    ||||||| |||||| |||||  |||||||||||||||||||||||||||||  ||| ||| |||| |||||||||||||||||| | || |||||||| |    
T  1150795 gatgtaggcaaactagctgcgtgtattgaagatgaagtggcgcgcaagaaagattcgatgggaatagtgcagatttgacatccgatatccgattgattcg 1150894  T
Q  161 aattatacatcttcggaaagagaatttgctcac 193  Q
    ||| |||| | ||||||||| ||||||||||||    
T  1150895 aatgataccttttcggaaagggaatttgctcac 1150927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 61 - 180
Target Start/End: Original strand, 34723483 - 34723602
Alignment:
Q  61 gatgtagccaaactggctgcacgtattgaagatgaagtggcgcgcaagaaatgttcaatgagaatggtgcagatttgacatccggtgtctgattgatttg 160  Q
    ||||||| || ||||||||| ||||||||||||||||||||||| |||||| ||| ||| ||||  ||| |||||||| |||  |||||||||||| |||    
T  34723483 gatgtaggcagactggctgcgcgtattgaagatgaagtggcgcgaaagaaaggtttaataagaagagtgtagatttgagatctagtgtctgattgacttg 34723582  T
Q  161 aattatacatcttcggaaag 180  Q
    || ||||| | |||||||||    
T  34723583 aaatataccttttcggaaag 34723602  T

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Target: chr3; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 88 - 167
Target Start/End: Complemental strand, 20398879 - 20398800
Alignment:
Q  88 gaagatgaagtggcgcgcaagaaatgttcaatgagaatggtgcagatttgacatccggtgtctgattgatttgaattata 167  Q
    ||||| |||||||||||||||||| ||||| | ||||| |||||||||| |||||||||||| |||||||  ||||||||    
T  20398879 gaagacgaagtggcgcgcaagaaaggttcagtcagaattgtgcagattttacatccggtgtcagattgatcagaattata 20398800  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 83 - 154
Target Start/End: Complemental strand, 24517552 - 24517481
Alignment:
Q  83 gtattgaagatgaagtggcgcgcaagaaatgttcaatgagaatggtgcagatttgacatccggtgtctgatt 154  Q
    ||||||||||  ||||| || | |||||| |||||||| |||| |||||||||||| |||||||||| ||||    
T  24517552 gtattgaagactaagtgacgtgtaagaaaggttcaatgtgaatagtgcagatttgatatccggtgtccgatt 24517481  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 115
Target Start/End: Complemental strand, 24516685 - 24516652
Alignment:
Q  82 cgtattgaagatgaagtggcgcgcaagaaatgtt 115  Q
    ||||||||||||||||||||||| ||||||||||    
T  24516685 cgtattgaagatgaagtggcgcgtaagaaatgtt 24516652  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 61 - 149
Target Start/End: Complemental strand, 1697504 - 1697416
Alignment:
Q  61 gatgtagccaaactggctgcacgtattgaagatgaagtggcgcgcaagaaatgttcaatgagaatggtgcagatttgacatccggtgtc 149  Q
    ||||||| |||||| || |||||| | |||||||||||||| ||||||||| ||| | |  |||| ||||| ||||| |||||| ||||    
T  1697504 gatgtaggcaaactagcggcacgtgtcgaagatgaagtggcacgcaagaaaagtttactcggaatagtgcaaatttggcatccgatgtc 1697416  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 61 - 149
Target Start/End: Complemental strand, 33620509 - 33620421
Alignment:
Q  61 gatgtagccaaactggctgcacgtattgaagatgaagtggcgcgcaagaaatgttcaatgagaatggtgcagatttgacatccggtgtc 149  Q
    |||||||  |||| ||| ||||| || ||||| |||||| ||||||||||| ||||| |  |||||||| | |||| ||||||||||||    
T  33620509 gatgtagataaaccggcggcacggatcgaagacgaagtgacgcgcaagaaaggttcactcggaatggtgtatattttacatccggtgtc 33620421  T

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Target: chr7 (Bit Score: 56; Significance: 4e-23; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 69 - 200
Target Start/End: Original strand, 32052640 - 32052771
Alignment:
Q  69 caaactggctgcacgtattgaagatgaagtggcgcgcaagaaatgttcaatgagaatggtgcagatttgacatccggtgtctgattgatttgaattatac 168  Q
    |||||||||||||| ||||||||||||||||||||||||||||   ||||||||||| ||  | ||||| ||   |||||| |||||| | |||||||||    
T  32052640 caaactggctgcacatattgaagatgaagtggcgcgcaagaaagactcaatgagaatagtctaaatttggcaattggtgtccgattgactcgaattatac 32052739  T
Q  169 atcttcggaaagagaatttgctcacaagcata 200  Q
     | ||||||||| |||||||||||| ||||||    
T  32052740 cttttcggaaagggaatttgctcacgagcata 32052771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 61 - 135
Target Start/End: Complemental strand, 11737605 - 11737531
Alignment:
Q  61 gatgtagccaaactggctgcacgtattgaagatgaagtggcgcgcaagaaatgttcaatgagaatggtgcagatt 135  Q
    ||||||| |||||||||||||||| | |||||||||||||||||||||||| | ||||||| ||| ||| |||||    
T  11737605 gatgtaggcaaactggctgcacgtgtcgaagatgaagtggcgcgcaagaaaggctcaatgaaaatagtgtagatt 11737531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 69 - 157
Target Start/End: Complemental strand, 32937224 - 32937136
Alignment:
Q  69 caaactggctgcacgtattgaagatgaagtggcgcgcaagaaatgttcaatgagaatggtgcagatttgacatccggtgtctgattgat 157  Q
    |||| ||||||||||||| |||||||||||| || |||| ||| ||||||||||||| ||| ||||||  |||||| |||| |||||||    
T  32937224 caaattggctgcacgtatcgaagatgaagtgacgtgcaaaaaaggttcaatgagaatagtgtagatttagcatccgatgtcggattgat 32937136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 61 - 156
Target Start/End: Complemental strand, 721982 - 721887
Alignment:
Q  61 gatgtagccaaactggctgcacgtattgaagatgaagtggcgcgcaagaaatgttcaatgagaatggtgcagatttgacatccggtgtctgattga 156  Q
    ||||||| |||| ||||| || |||| |||||||||||||| | |||||||   |||||| |||| ||| ||||||| ||||||||||| ||||||    
T  721982 gatgtaggcaaattggctacatgtatcgaagatgaagtggcacacaagaaagactcaatgtgaatagtgtagatttgccatccggtgtcggattga 721887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 61 - 156
Target Start/End: Original strand, 14503725 - 14503820
Alignment:
Q  61 gatgtagccaaactggctgcacgtattgaagatgaagtggcgcgcaagaaatgttcaatgagaatggtgcagatttgacatccggtgtctgattga 156  Q
    ||||||| |||| ||||||||| |||||||||| ||||||||||||||||| ||||||| | ||| |||||||||| ||||| |||||| ||||||    
T  14503725 gatgtaggcaaagtggctgcacttattgaagataaagtggcgcgcaagaaaggttcaataaaaatagtgcagatttaacatctggtgtcagattga 14503820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 64 - 242
Target Start/End: Original strand, 7775006 - 7775184
Alignment:
Q  64 gtagccaaactggctgcacgtattgaagatgaagtggcgcgcaagaaatgttcaatgagaatggtgcagatttgacatccggtgtctgattgatttgaat 163  Q
    |||| |||||||||| ||| ||||||||| |||| |||| |||||||| | ||||||  |||  ||||||||||  |||||||||  |||||| | ||||    
T  7775006 gtaggcaaactggctacacatattgaagacgaagcggcgtgcaagaaaggctcaatggaaataatgcagatttggtatccggtgtacgattgactcgaat 7775105  T
Q  164 tatacatcttcggaaagagaatttgctcacaagcatatctcaaggtttctccatgatgtaggggtgaatttagtcattc 242  Q
    ||||| | ||||||||  |||||||||||| | | || |||   | || |||| |||||| |||||||||||| |||||    
T  7775106 tatacgttttcggaaaaggaatttgctcacgaccttaactcgtcgcttttccacgatgtaagggtgaatttagccattc 7775184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 168
Target Start/End: Complemental strand, 35161210 - 35161122
Alignment:
Q  80 cacgtattgaagatgaagtggcgcgcaagaaatgttcaatgagaatggtgcagatttgacatccggtgtctgattgatttgaattatac 168  Q
    ||||||| |||||||||||| ||  ||||||||||||| |  |||| ||| |||||||||||||| |||  | |||||| |||||||||    
T  35161210 cacgtatcgaagatgaagtgacgtacaagaaatgttcatttggaatagtgtagatttgacatccgttgttgggttgattcgaattatac 35161122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 61 - 154
Target Start/End: Original strand, 9295005 - 9295098
Alignment:
Q  61 gatgtagccaaactggctgcacgtattgaagatgaagtggcgcgcaagaaatgttcaatgagaatggtgcagatttgacatccggtgtctgatt 154  Q
    ||||||| |||||| ||||||||||| ||||||||||||| ||| |||||||| ||||||| ||| ||| ||||||| ||||||||||| ||||    
T  9295005 gatgtaggcaaactagctgcacgtatcgaagatgaagtggtgcgtaagaaatgctcaatgaaaatagtgtagatttggcatccggtgtcggatt 9295098  T

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Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 69 - 180
Target Start/End: Original strand, 16848323 - 16848434
Alignment:
Q  69 caaactggctgcacgtattgaagatgaagtggcgcgcaagaaatgttcaatgagaatggtgcagatttgacatccggtgtctgattgatttgaattatac 168  Q
    ||||||||| || ||||| ||||||||||||||||  ||||||   ||| | ||||| |||||||||||||||||| |||| ||||||  ||||||||||    
T  16848323 caaactggcggcgcgtatcgaagatgaagtggcgcataagaaagactcacttagaatagtgcagatttgacatccgatgtcggattgacctgaattatac 16848422  T
Q  169 atcttcggaaag 180  Q
    || |||||||||    
T  16848423 attttcggaaag 16848434  T

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Target: chr8; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 75 - 168
Target Start/End: Original strand, 2262364 - 2262457
Alignment:
Q  75 ggctgcacgtattgaagatgaagtggcgcgcaagaaatgttcaatgagaatggtgcagatttgacatccggtgtctgattgatttgaattatac 168  Q
    |||| ||||||||||||||||||||||||| || ||| |||||||||||||  |||||||||| ||||  ||||| |||||| | |||||||||    
T  2262364 ggcttcacgtattgaagatgaagtggcgcgtaacaaaagttcaatgagaataatgcagatttggcatctagtgtcggattgactcgaattatac 2262457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 61 - 168
Target Start/End: Original strand, 15081164 - 15081270
Alignment:
Q  61 gatgtagccaaactggctgcacgtattgaagatgaagtggcgcgcaagaaatgttcaatgagaatggtgcagatttgacatccggtgtctgattgatttg 160  Q
    ||||||| ||||||||||||| |||||||||||||||||||| | |||||| |||||||  ||||  || | | ||| ||||||||||| |||||| | |    
T  15081164 gatgtaggcaaactggctgcatgtattgaagatgaagtggcgtgtaagaaaagttcaataggaatattgta-aattggcatccggtgtcggattgactcg 15081262  T
Q  161 aattatac 168  Q
    ||||||||    
T  15081263 aattatac 15081270  T

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Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 99
Target Start/End: Complemental strand, 6990276 - 6990238
Alignment:
Q  61 gatgtagccaaactggctgcacgtattgaagatgaagtg 99  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  6990276 gatgtaggcaaactggctgcacgtattgaagatgaagtg 6990238  T

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Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 83 - 185
Target Start/End: Complemental strand, 29019588 - 29019486
Alignment:
Q  83 gtattgaagatgaagtggcgcgcaagaaatgttcaatgagaatggtgcagatttgacatccggtgtctgattgatttgaattatacatcttcggaaagag 182  Q
    ||||||||||||||||| |  |||| ||| ||| ||||||||| |||||||||||||||| | |||| || ||| ||||| ||||| | || |||||| |    
T  29019588 gtattgaagatgaagtgtcatgcaaaaaaagtttaatgagaatagtgcagatttgacatctgttgtccgaatgacttgaaatatacctttttggaaaggg 29019489  T
Q  183 aat 185  Q
    |||    
T  29019488 aat 29019486  T

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Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 175
Target Start/End: Complemental strand, 38082549 - 38082457
Alignment:
Q  83 gtattgaagatgaagtggcgcgcaagaaatgttcaatgagaatggtgcagatttgacatccggtgtctgattgatttgaattatacatcttcg 175  Q
    |||| |||||||||||| |||||||||||   ||  | ||||| ||||||||||| ||||||||||| || ||| | ||||||||||| ||||    
T  38082549 gtatcgaagatgaagtgacgcgcaagaaagactcgctcagaatagtgcagatttggcatccggtgtcggaatgactcgaattatacattttcg 38082457  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 348
Target Start/End: Original strand, 2262598 - 2262626
Alignment:
Q  320 cggcccattaggatttgttatttccctag 348  Q
    |||||||||||||||||||||||||||||    
T  2262598 cggcccattaggatttgttatttccctag 2262626  T

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Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 61 - 200
Target Start/End: Complemental strand, 13193326 - 13193187
Alignment:
Q  61 gatgtagccaaactggctgcacgtattgaagatgaagtggcgcgcaagaaatgttcaatgagaatggtgcagatttgacatccggtgtctgattgatttg 160  Q
    ||||||| ||| ||||||||||||||  |||||||||||||| |||||||||     |||||||| ||||||||||||||| |  ||||  ||||| | |    
T  13193326 gatgtaggcaagctggctgcacgtatcaaagatgaagtggcgtgcaagaaatacattatgagaatagtgcagatttgacattcaatgtcatattgactcg 13193227  T
Q  161 aattatacatcttcggaaagagaatttgctcacaagcata 200  Q
    |||||||| | ||||||||| |||||| ||||| ||||||    
T  13193226 aattataccttttcggaaagggaatttcctcacgagcata 13193187  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 61 - 149
Target Start/End: Complemental strand, 28260595 - 28260507
Alignment:
Q  61 gatgtagccaaactggctgcacgtattgaagatgaagtggcgcgcaagaaatgttcaatgagaatggtgcagatttgacatccggtgtc 149  Q
    ||||||| |||||||||| ||||  | ||||||||||||| ||| ||||||   ||||||||||| |||||||||||||||||||||||    
T  28260595 gatgtaggcaaactggctccacgattcgaagatgaagtggtgcgtaagaaagactcaatgagaatagtgcagatttgacatccggtgtc 28260507  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 61 - 148
Target Start/End: Original strand, 45085332 - 45085419
Alignment:
Q  61 gatgtagccaaactggctgcacgtattgaagatgaagtggcgcgcaagaaatgttcaatgagaatggtgcagatttgacatccggtgt 148  Q
    ||||||| |||| ||||||||| ||  |||||||||||| ||||||||||| | |||||||||||  |||| |||||  |||||||||    
T  45085332 gatgtaggcaaattggctgcacataccgaagatgaagtgtcgcgcaagaaaggctcaatgagaataatgcatatttggtatccggtgt 45085419  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 84 - 141
Target Start/End: Original strand, 22169621 - 22169678
Alignment:
Q  84 tattgaagatgaagtggcgcgcaagaaatgttcaatgagaatggtgcagatttgacat 141  Q
    ||||||||| ||||||||||||||||||| ||||| | |||| ||||| |||||||||    
T  22169621 tattgaagacgaagtggcgcgcaagaaatattcaaggggaatagtgcaaatttgacat 22169678  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 242
Target Start/End: Original strand, 11923479 - 11923657
Alignment:
Q  64 gtagccaaactggctgcacgtattgaagatgaagtggcgcgcaagaaatgttcaatgagaatggtgcagatttgacatccggtgtctgattgatttgaat 163  Q
    |||| |||||||||| ||| ||||||||| |||  |||  |||||||| | ||||||  |||  ||||||||||  |||||||||  |||||  | ||||    
T  11923479 gtaggcaaactggctacacatattgaagacgaatcggcatgcaagaaaggctcaatggaaataatgcagatttggtatccggtgtacgattggctcgaat 11923578  T
Q  164 tatacatcttcggaaagagaatttgctcacaagcatatctcaaggtttctccatgatgtaggggtgaatttagtcattc 242  Q
    ||||  | ||||||||  |||||||||||| ||| || |||   | || |||| |||||| |||||||||||| |||||    
T  11923579 tatatgttttcggaaaaggaatttgctcacgagcttaactcgtcgcttttccacgatgtaagggtgaatttagccattc 11923657  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 82 - 166
Target Start/End: Original strand, 10779518 - 10779602
Alignment:
Q  82 cgtattgaagatgaagtggcgcgcaagaaatgttcaatgagaatggtgcagatttgacatccggtgtctgattgatttgaattat 166  Q
    |||||||||||||||||||||||||||||| ||||| | | ||||||||||||||  |||| |||||| || |||  ||||||||    
T  10779518 cgtattgaagatgaagtggcgcgcaagaaaggttcacttaaaatggtgcagattttgcatctggtgtcagaatgacctgaattat 10779602  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 88 - 179
Target Start/End: Complemental strand, 19475101 - 19475010
Alignment:
Q  88 gaagatgaagtggcgcgcaagaaatgttcaatgagaatggtgcagatttgacatccggtgtctgattgatttgaattatacatcttcggaaa 179  Q
    |||||||||| || |||||| ||| ||||| | ||||| ||||||||||| ||||||||||| || ||| | ||||||||||| || |||||    
T  19475101 gaagatgaagcggagcgcaaaaaaggttcactcagaatagtgcagatttggcatccggtgtcggaatgactcgaattatacatttttggaaa 19475010  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 64 - 242
Target Start/End: Complemental strand, 8569091 - 8568913
Alignment:
Q  64 gtagccaaactggctgcacgtattgaagatgaagtggcgcgcaagaaatgttcaatgagaatggtgcagatttgacatccggtgtctgattgatttgaat 163  Q
    |||| ||||||||||  || ||||||||| |||| |||| |||||||| | |||||   |||  ||||||||||  ||| |||||  |||||| | ||||    
T  8569091 gtaggcaaactggctatacatattgaagacgaagcggcgtgcaagaaaggctcaatagaaataatgcagatttggtatctggtgtacgattgactcgaat 8568992  T
Q  164 tatacatcttcggaaagagaatttgctcacaagcatatctcaaggtttctccatgatgtaggggtgaatttagtcattc 242  Q
    ||||| | ||||||||  |||||||||||| ||| || |||   | || |||| |||||| |||||||||||| |||||    
T  8568991 tatacgttttcggaaaaggaatttgctcacgagcttaactcgtcgattttccacgatgtaagggtgaatttagccattc 8568913  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 180
Target Start/End: Complemental strand, 13394666 - 13394565
Alignment:
Q  79 gcacgtattgaagatgaagtggcgcgcaagaaatgttcaatgagaatggtgcagatttgacatccggtgtctgattgatttgaattatacatcttcggaa 178  Q
    ||||| || ||||| || ||||| ||||||||| ||||| | | ||||||||| ||||  ||| |||||||||||||||   |||||||| | |||||||    
T  13394666 gcacgaatcgaagacgatgtggcacgcaagaaaggttcagtcaaaatggtgcatatttttcattcggtgtctgattgatccaaattataccttttcggaa 13394567  T
Q  179 ag 180  Q
    ||    
T  13394566 ag 13394565  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 61 - 113
Target Start/End: Complemental strand, 2339555 - 2339503
Alignment:
Q  61 gatgtagccaaactggctgcacgtattgaagatgaagtggcgcgcaagaaatg 113  Q
    ||||||| ||||||||| || | |||||||||||||||||| | |||||||||    
T  2339555 gatgtagacaaactggcggcgcatattgaagatgaagtggctcacaagaaatg 2339503  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 100 - 200
Target Start/End: Original strand, 5840739 - 5840838
Alignment:
Q  100 gcgcgcaagaaatgttcaatgagaatggtgcagatttgacatccggtgtctgattgatttgaattatacatcttcggaaagagaatttgctcacaagcat 199  Q
    ||||||||||||   |||||| |||| ||||||||||| || |||||||| |||||| | ||||||||||| ||||||||| ||||| |||||| |||||    
T  5840739 gcgcgcaagaaagactcaatg-gaatagtgcagatttggcaaccggtgtcggattgactcgaattatacattttcggaaagggaattcgctcacgagcat 5840837  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 89 - 149
Target Start/End: Original strand, 8781127 - 8781187
Alignment:
Q  89 aagatgaagtggcgcgcaagaaatgttcaatgagaatggtgcagatttgacatccggtgtc 149  Q
    |||| |||||||||||||||||| ||||| | |||| |||||||||||  |||| ||||||    
T  8781127 aagacgaagtggcgcgcaagaaaggttcagtcagaacggtgcagattttgcatctggtgtc 8781187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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