View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1345_high_127 (Length: 362)
Name: NF1345_high_127
Description: NF1345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1345_high_127 |
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Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 119 - 352
Target Start/End: Complemental strand, 54773802 - 54773569
Alignment:
| Q |
119 |
gttattggagggaataaagcctgatccagtcacgtttgtgaatcttctctctgcctgtagtcatatgggactggtggatagaggctgggagtatttcaag |
218 |
Q |
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| T |
54773802 |
gttattggagggaataaagcctgatccagtcacgtttgtgaatcttctctctgcctgtagtcatatgggactggtggatagaggctgggagtatttcaag |
54773703 |
T |
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| Q |
219 |
atgatgtttgatgagtttaacattgctccgatggtagagcattatgcttgcatggttgacatcttaagccgtgcaggcaagctcaatgaagctaaagagt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54773702 |
atgatgtttgatgagtttaacattgctccgatggtagagcattatgcttgcatggttgacatcttaagccgtgcaggcaagctcaatgaagctaaagagt |
54773603 |
T |
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| Q |
319 |
tcattgaatctgcaacggttgatcacggtctgtg |
352 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
54773602 |
tcattgaatctgcaacggttgatcacggtctgtg |
54773569 |
T |
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