View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1345_high_128 (Length: 362)
Name: NF1345_high_128
Description: NF1345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1345_high_128 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 179; Significance: 2e-96; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 88 - 352
Target Start/End: Original strand, 1940044 - 1940310
Alignment:
| Q |
88 |
aatttaagaccttctaa-ttgaacttacacatgagatg-catgaaactatatatatgataatagggatggaagtgtgatatatggaagcaatcaagaagt |
185 |
Q |
| |
|
||||||||||||| ||| |||||||||||||||| ||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1940044 |
aatttaagaccttttaaattgaacttacacatgacatgacatgaatgaaactatatgataatagggatggaagtgtgatatatggaagcaatcaagaagt |
1940143 |
T |
|
| Q |
186 |
tttgaacaaagtgaggactttcaaagatggtaaaatcaaaatatcaaaggaaggtgaacttcttcataatgaaaatggaacagcaatttcaggtgatgtt |
285 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || |
|
|
| T |
1940144 |
tttggacaaagtgaggactttcaaagatggtaaaatcaaaatatcaaaggaaggtgaacttcttcataatgaagatggaacagcaatttcaggtgacatt |
1940243 |
T |
|
| Q |
286 |
cgcaatagttgggctggtgtctcaactttgcaggctctttttattcaagaacacaatgctgtctgtg |
352 |
Q |
| |
|
|| |||||||||||||||||| ||||||||||| | |||||| ||| ||||||||||||||| |||| |
|
|
| T |
1940244 |
cgtaatagttgggctggtgtcacaactttgcagaccctttttgttctagaacacaatgctgtgtgtg |
1940310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 35 - 345
Target Start/End: Original strand, 1954468 - 1954764
Alignment:
| Q |
35 |
ctagggctatctaattttgtctagtaattatacttaattagatatatagtctcaatttaagaccttctaattgaacttacacatgagatgcatgaaacta |
134 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
1954468 |
ctaggtctatctaattttgtctagtaattatactta----------tagtctcaatttaagaccttctaattgaacttacacatgacatgcatgaaacta |
1954557 |
T |
|
| Q |
135 |
tatatatgataatagggatggaagtgtgatatatggaagcaatcaagaagttttgaacaaagtgaggactttcaaagatggtaaaatcaaaatatcaaag |
234 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || | ||||||| | | |
|
|
| T |
1954558 |
ta----tgataatagggatggaagtgtgatatatggaagcaatcaagaagttttgaacaaagtgagaactttcaaagatgggaagttaaaaatattagac |
1954653 |
T |
|
| Q |
235 |
gaaggtgaacttcttcataatgaaaatggaacagcaatttcaggtgatgttcgcaatagttgggctggtgtctcaactttgcaggctctttttattcaag |
334 |
Q |
| |
|
|| ||| ||| || |||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
1954654 |
gatggtacccttaagcaaaatgaaaatggagtagcaatttcaggtgacgttcgcaatagttgggctggtgtctcaactttgcaggctctctttattcaag |
1954753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 148 - 357
Target Start/End: Original strand, 1925776 - 1925988
Alignment:
| Q |
148 |
agggatggaagtgtgatatatggaagcaatcaagaagttttgaacaaagtgaggactttcaaagatggtaaaatcaaaatatcaaaggaagg---tgaac |
244 |
Q |
| |
|
|||||||||||||||||||||||||||||| | ||| |||||| | |||||||||||| | ||||||| || | ||||||||||||||||| | | | |
|
|
| T |
1925776 |
agggatggaagtgtgatatatggaagcaatgatgaaattttgacccaagtgaggacttcccaagatgggaagttaaaaatatcaaaggaaggaaatcatc |
1925875 |
T |
|
| Q |
245 |
ttcttcataatgaaaatggaacagcaatttcaggtgatgttcgcaatagttgggctggtgtctcaactttgcaggctctttttattcaagaacacaatgc |
344 |
Q |
| |
|
|||| || || ||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||| ||||||||||||||||| |
|
|
| T |
1925876 |
ttctacaaaacgaagatggagttgcaatttcaggtgatgttcgcaatagttgggctggtgtttcaactttgcaagcccttttcattcaagaacacaatgc |
1925975 |
T |
|
| Q |
345 |
tgtctgtggtgct |
357 |
Q |
| |
|
||| |||| |||| |
|
|
| T |
1925976 |
tgtttgtgatgct |
1925988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 38
Target Start/End: Original strand, 31581832 - 31581864
Alignment:
| Q |
6 |
aaaatatccattggatttgaatgcaacagctag |
38 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
31581832 |
aaaatatccattggatttgaatgcaacagctag |
31581864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University