View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1345_high_130 (Length: 359)
Name: NF1345_high_130
Description: NF1345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1345_high_130 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 13 - 330
Target Start/End: Complemental strand, 38360630 - 38360331
Alignment:
| Q |
13 |
aatattaaattacatggcaccttgaacatgagagagacgttggaggtggtacttgaatcacattcattgttcccccaaagtatcttcactccaattannn |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
38360630 |
aatattaaattacatggcaccttgaacatgagagagacgttggaggtggtacttgaatcacatt----gttcccccaaagtatcttcactccaatt---- |
38360539 |
T |
|
| Q |
113 |
nnnnnnnnnnnnnnnnngacaaaatcttcactccaatctttattccgtttctaaattttcttcatttcataaagtccacgttaaatataaatttttcgag |
212 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
38360538 |
--------tttttttttgacaaaatcttcactccaatctttattctgtttataaattttcttcatttcataaagtccacgttaaatataaaattttcgag |
38360447 |
T |
|
| Q |
213 |
ttagactcctttaagcaattggtgttaaacaaacaaatcctttaacttaaaacaccaagtatcaatcttaaggatattcaaagcaattttagcttcttcg |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38360446 |
ttagactcctttaagcaattggtgttaaacaa--aaatcctttaacttaaaacaccaagtatcaatcttaaggatattcaaagcaattttagcttcttcg |
38360349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University