View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1345_high_133 (Length: 352)
Name: NF1345_high_133
Description: NF1345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1345_high_133 |
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Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 18 - 254
Target Start/End: Complemental strand, 16962721 - 16962485
Alignment:
| Q |
18 |
tccaataatatacataactttaaaagtagttacgattgaagtcaannnnnnnnaataatctgtcaattataatttatcgacggtgtaattttttacactg |
117 |
Q |
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| T |
16962721 |
tccaataatatatataactttataagtagttacgattgaagtcaattgtttttaataatctgtcaattataattcattgacggtgtaattttttacactg |
16962622 |
T |
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| Q |
118 |
tcggttaaataatatgtgcttgtggttttttatgagcttcctgcaatgaaatggggcccacaggagtgaatttgtaatgtcattttctcttgttttttac |
217 |
Q |
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| T |
16962621 |
tcggttaaataatatgtgcttgtggttttttatgagcttcctgcaatgaaatggggcccacaggagtgaatttgtaatgtcattttctcttgttttttac |
16962522 |
T |
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| Q |
218 |
acagctatttaaaggttggctcaaagatggttcaatg |
254 |
Q |
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| T |
16962521 |
acagctatttaaaggttggctcaaagatggttcaatg |
16962485 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 165 - 244
Target Start/End: Complemental strand, 16215388 - 16215310
Alignment:
| Q |
165 |
gaaatggggcccacaggagtgaatttgtaatgtcattttctcttgttttttacacagctatttaaaggttggctcaaaga |
244 |
Q |
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| T |
16215388 |
gaaatggggcccacaagactgaatttgtaatggcattgtctcttgt-ttttacacagttgtttaaaggctggctcgaaga |
16215310 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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