View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1345_high_140 (Length: 338)
Name: NF1345_high_140
Description: NF1345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1345_high_140 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 24 - 338
Target Start/End: Complemental strand, 286944 - 286630
Alignment:
| Q |
24 |
ataatacttcacttgacatggaaattgaagatagtatcaccatttataaagattaaattaacaaagctcaactcaccttgctaatgcaggtgggtcccat |
123 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
286944 |
ataatacttcacttgacatggaaattgaagatagttacaccatttataaagattacattaacaaagctcaaatcaccttgctaatgcaggtgggtcccat |
286845 |
T |
|
| Q |
124 |
gatgatggaacagcttttttaacatgatcgcaaagtagcatctgagacttctctaatgcaacagtgtaaagtgtaattaacaccccatcaaaagcaaggg |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
286844 |
gatgatggaacagcttttttaacatgatcgcaaagtagcatctgagacttctctaatgcaacagtgtaaagtgtaattaaaaccccatcaaaagcaaggg |
286745 |
T |
|
| Q |
224 |
tcttggtatgagctgcatctttctgccaactcccagaaaattcaaacattgaattgaaaagcccagagggaattttgccagttaaagacaactcctgatt |
323 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
286744 |
tcttggtatgagctgcatctttctgccagctcccagaaaattcaaacattgaattgaaaagtccagagggaattttgccagtcaaagacaactcctgatt |
286645 |
T |
|
| Q |
324 |
gaactgctcagtcat |
338 |
Q |
| |
|
||||||||| ||||| |
|
|
| T |
286644 |
gaactgctcggtcat |
286630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University