View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1345_high_141 (Length: 337)
Name: NF1345_high_141
Description: NF1345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1345_high_141 |
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Alignment Details
Target: chr8 (Bit Score: 166; Significance: 8e-89; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 66 - 289
Target Start/End: Original strand, 11638057 - 11638286
Alignment:
| Q |
66 |
attgaaaacaccgcatatttcataagttaaggattttattgctagaaatttggtattggaaagtgtggcaatttattttgtcgatagttaaatattaagn |
165 |
Q |
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| T |
11638057 |
attgaaaacacagcatatttcataagttaaggattttattgctagaaatttggtattggaaagtgtggcaatttatgttgtcgatagttaaatattaagt |
11638156 |
T |
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| Q |
166 |
nnnnnncaataaatatttttatttatggaattc------tgagccctagagacacattaacatgacctataaataaacatactttttatattaaaaacaa |
259 |
Q |
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| T |
11638157 |
ttttttcaataaatatttttatttatgaaattcttaatataagccctagagacacattagcatgacctataaataaacatactttttatattaaaaacaa |
11638256 |
T |
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| Q |
260 |
acttaacaaaatagggattcactaaatatt |
289 |
Q |
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| T |
11638257 |
acttaacaaaatagggattcactaaatatt |
11638286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 87 - 289
Target Start/End: Original strand, 11634507 - 11634717
Alignment:
| Q |
87 |
ataagttaaggattttattgctagaaatttggtattggaaagtgtggcaatttattttgtcgatagttaaatattaagnnnnnnncaataaatattttta |
186 |
Q |
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| T |
11634507 |
ataagataaagattttattactagaaatttggttttggaaagtgtgacaagttattttataaaaagttgaatattaa-attttctcaataaatattttta |
11634605 |
T |
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| Q |
187 |
tttatggaattctgagccctag------agacacattaacatgacctataaa-taaacatactttt-tatattaaaaacaaacttaacaaaata--ggga |
276 |
Q |
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| T |
11634606 |
tttatgaaatccttaacattaatagtacagacacattagcatgacccataaaataaacatacttttgtatattaaaaa-aaacttaacaacatataggga |
11634704 |
T |
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| Q |
277 |
ttcactaaatatt |
289 |
Q |
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| T |
11634705 |
ttcactaaatatt |
11634717 |
T |
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