View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1345_high_148 (Length: 332)
Name: NF1345_high_148
Description: NF1345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1345_high_148 |
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Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 79 - 321
Target Start/End: Original strand, 27814398 - 27814640
Alignment:
| Q |
79 |
ttcgatttcatttatcttcaagctcacccttccttcttcttcccactacactattcctacaaagctctgctttttctcatatgggtaatcttattatcca |
178 |
Q |
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| T |
27814398 |
ttcgatttcatttatcttcaagctcacccttccttcttcttcccactacactattcctacaaagctctgttttttctcatatgggtaatcttattatcca |
27814497 |
T |
|
| Q |
179 |
tcaccttgatttggcaacttgatatcataaaatgaagttttattcttcaaagagaagtgtaaatgtgttccagaattgcaaaaccatatcaataagatga |
278 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||| || |
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| T |
27814498 |
tcaccttgatttggcaacttgatatcataaaatgaaattttattcttcaaagaaaagtgtaaatatgttccaaaattgcaaaaccatatcaataagaaga |
27814597 |
T |
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| Q |
279 |
atatgaggttgaacccccaacaagatctactggctggctctgt |
321 |
Q |
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| T |
27814598 |
atatgagtttgaacccccaacaagatctactggctggttctgt |
27814640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 144; Significance: 1e-75; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 135 - 321
Target Start/End: Complemental strand, 20196218 - 20196031
Alignment:
| Q |
135 |
ctacaaagctctgctttttctcatatgggtaatcttattatccatcaccttgatttggcaacttgatatcataaaatgaagttttattcttcaaagagaa |
234 |
Q |
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| T |
20196218 |
ctacaaagctctcttttttctcatatgggtaatcttattatccttcaccttgatttggcaacttgatatcacaaaatgaagttttattcttcaaagagaa |
20196119 |
T |
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| Q |
235 |
gtgtaaatgtgttccagaattgcaaaaccatatcaataagatgaatatgaggttgaacc-cccaacaagatctactggctggctctgt |
321 |
Q |
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| T |
20196118 |
gtgtaaatgtgttccagaattgcaaaaccatatcaataagaagaatatgaggttgaacctcccaacaaactctaggggctggctctgt |
20196031 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 74; Significance: 6e-34; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 213 - 321
Target Start/End: Original strand, 36379213 - 36379322
Alignment:
| Q |
213 |
aagttttattcttcaaagagaagtgtaaatgtgttccagaattgcaaaaccatatcaataagatgaatatgaggttgaac-ccccaacaagatctactgg |
311 |
Q |
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| T |
36379213 |
aagttttattcttcaaagagaagtgtaaatgtgttccagaattgcaaaaccatattaataagaagaatatgaggttgaacgtaccaacaaactctactga |
36379312 |
T |
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| Q |
312 |
ctggctctgt |
321 |
Q |
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|||||||||| |
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| T |
36379313 |
ctggctctgt |
36379322 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 239 - 321
Target Start/End: Complemental strand, 23889435 - 23889352
Alignment:
| Q |
239 |
aaatgtgttccagaattgcaaaaccatatcaataagatgaatatgaggttgaac-ccccaacaagatctactggctggctctgt |
321 |
Q |
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| T |
23889435 |
aaatgtgttccagaattgcaaaaccatattaataagaagaatatgaggttgaacgtaccaacaaactctactggctggctctgt |
23889352 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 239 - 321
Target Start/End: Complemental strand, 23901648 - 23901565
Alignment:
| Q |
239 |
aaatgtgttccagaattgcaaaaccatatcaataagatgaatatgaggttgaac-ccccaacaagatctactggctggctctgt |
321 |
Q |
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| T |
23901648 |
aaatgtgttccagaattgcaaaaccatattaataagaagaatatgaggttgaacgtaccaacaaactctactggctggctctgt |
23901565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 149 - 184
Target Start/End: Complemental strand, 38058433 - 38058398
Alignment:
| Q |
149 |
tttttctcatatgggtaatcttattatccatcacct |
184 |
Q |
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| T |
38058433 |
tttttctcatatgggtaatcttatcatccatcacct |
38058398 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 213 - 291
Target Start/End: Original strand, 39204996 - 39205074
Alignment:
| Q |
213 |
aagttttattcttcaaagagaagtgtaaatgtgttccagaattgcaaaaccatatcaataagatgaatatgaggttgaa |
291 |
Q |
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|||||||||||||| |||| || |||||||||||||||||| ||||||||||||| ||||||| ||||||||||||||| |
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| T |
39204996 |
aagttttattcttcgaagacaaatgtaaatgtgttccagaactgcaaaaccatattaataagaagaatatgaggttgaa |
39205074 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 135 - 184
Target Start/End: Complemental strand, 35942708 - 35942658
Alignment:
| Q |
135 |
ctacaaagctct-gctttttctcatatgggtaatcttattatccatcacct |
184 |
Q |
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|||||||||||| | |||||||||||||||||||||||| ||||||||||| |
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| T |
35942708 |
ctacaaagctctcgttttttctcatatgggtaatcttatcatccatcacct |
35942658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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