View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1345_high_160 (Length: 316)
Name: NF1345_high_160
Description: NF1345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1345_high_160 |
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Alignment Details
Target: chr5 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 31 - 302
Target Start/End: Original strand, 38422314 - 38422585
Alignment:
| Q |
31 |
agatctgatcggacatctgtgcaaagtcatcgtagattgtcaatgaatcgaaagtaaactcatggtatatttcaaaattcaattattaatttgtttatcg |
130 |
Q |
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| T |
38422314 |
agatctgatcggacatctgtgcaaagtcatcgtagattgtcaatgtatcgaaagtaaactcatggtatatttcaaaatttaattattaatttttttatcg |
38422413 |
T |
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| Q |
131 |
ataattgatattactcacgttactctttaaagtgagttgttcatattagagtgagtcaaatccatcttttatagtggagttgtgatggaattacttacta |
230 |
Q |
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| T |
38422414 |
ataattgatattactcacgttactctttaaagtgagttgttcacattagagtgagtcaaatccatcttttatagtggagttgtgatggaattacttacta |
38422513 |
T |
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| Q |
231 |
acaaccaagctatttttattctcctaatatcgttctagctaagtgtgtagccatcgaggaagaggagcaaca |
302 |
Q |
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| T |
38422514 |
acaaccaagctatttttattctcctaatatcgttctagctaagtgtgtagccatcgaggaagaggagcaaca |
38422585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 173
Target Start/End: Original strand, 14314414 - 14314472
Alignment:
| Q |
115 |
attaatttgtttatcgataattgatattactcacgttactctttaaagtgagttgttca |
173 |
Q |
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| T |
14314414 |
attaatatgttcatcgatagttgatatcactcactttattctttgaagtgagttgttca |
14314472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 172
Target Start/End: Complemental strand, 43034367 - 43034330
Alignment:
| Q |
135 |
ttgatattactcacgttactctttaaagtgagttgttc |
172 |
Q |
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| T |
43034367 |
ttgatattactcactttactctttaaagtgaattgttc |
43034330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 173
Target Start/End: Complemental strand, 52849456 - 52849416
Alignment:
| Q |
133 |
aattgatattactcacgttactctttaaagtgagttgttca |
173 |
Q |
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|||||||||||||||| ||||| | |||||||||||||||| |
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| T |
52849456 |
aattgatattactcactttactttctaaagtgagttgttca |
52849416 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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