View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1345_high_165 (Length: 304)

Name: NF1345_high_165
Description: NF1345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1345_high_165
NF1345_high_165
[»] chr1 (9 HSPs)
chr1 (261-301)||(11821528-11821568)
chr1 (261-300)||(17696579-17696618)
chr1 (261-300)||(50068893-50068932)
chr1 (261-300)||(47488654-47488693)
chr1 (261-298)||(21485130-21485167)
chr1 (261-297)||(5764877-5764913)
chr1 (261-297)||(18842110-18842146)
chr1 (261-297)||(30310324-30310360)
chr1 (167-195)||(45688606-45688634)
[»] scaffold1763 (1 HSPs)
scaffold1763 (261-300)||(15-54)
[»] chr7 (9 HSPs)
chr7 (261-300)||(2355820-2355859)
chr7 (261-300)||(20379312-20379351)
chr7 (261-300)||(26603842-26603881)
chr7 (261-300)||(30360076-30360115)
chr7 (261-300)||(48221371-48221410)
chr7 (261-298)||(149763-149800)
chr7 (261-298)||(8726713-8726750)
chr7 (261-298)||(11824357-11824394)
chr7 (261-298)||(18146631-18146668)
[»] chr5 (8 HSPs)
chr5 (261-300)||(3458355-3458394)
chr5 (261-300)||(19399895-19399934)
chr5 (261-300)||(40009079-40009118)
chr5 (261-298)||(12742388-12742425)
chr5 (261-298)||(12805206-12805243)
chr5 (261-298)||(36312450-36312487)
chr5 (261-297)||(7081962-7081998)
chr5 (261-297)||(33370321-33370357)
[»] chr3 (12 HSPs)
chr3 (261-300)||(33449786-33449825)
chr3 (261-300)||(53827330-53827369)
chr3 (261-296)||(42950647-42950682)
chr3 (261-300)||(47065236-47065275)
chr3 (261-298)||(42381820-42381857)
chr3 (261-298)||(42382600-42382637)
chr3 (261-300)||(44836118-44836157)
chr3 (261-298)||(19236979-19237016)
chr3 (261-297)||(7953888-7953924)
chr3 (261-297)||(8633895-8633931)
chr3 (261-297)||(36721861-36721897)
chr3 (261-297)||(37281137-37281173)
[»] chr2 (12 HSPs)
chr2 (261-300)||(12968928-12968967)
chr2 (263-300)||(42119576-42119613)
chr2 (261-300)||(22492816-22492855)
chr2 (261-298)||(16706499-16706536)
chr2 (261-298)||(16706642-16706679)
chr2 (261-298)||(17796600-17796637)
chr2 (261-298)||(18878185-18878222)
chr2 (261-298)||(20147795-20147832)
chr2 (261-298)||(27650931-27650968)
chr2 (167-195)||(12969029-12969057)
chr2 (167-195)||(17796854-17796882)
chr2 (261-297)||(42241595-42241631)
[»] chr4 (6 HSPs)
chr4 (263-300)||(33164173-33164210)
chr4 (261-298)||(3392977-3393014)
chr4 (261-298)||(23125021-23125058)
chr4 (261-297)||(21711231-21711267)
chr4 (261-297)||(24606423-24606459)
chr4 (261-297)||(32938402-32938438)
[»] chr8 (4 HSPs)
chr8 (261-300)||(28706773-28706812)
chr8 (261-300)||(33800165-33800204)
chr8 (261-300)||(43640642-43640681)
chr8 (261-297)||(43692818-43692854)
[»] chr6 (6 HSPs)
chr6 (261-300)||(35060586-35060625)
chr6 (261-298)||(3098001-3098038)
chr6 (261-298)||(28050935-28050972)
chr6 (167-195)||(14483510-14483538)
chr6 (167-195)||(28050845-28050873)
chr6 (163-195)||(35060688-35060720)


Alignment Details
Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 261 - 301
Target Start/End: Original strand, 11821528 - 11821568
Alignment:
Q  261 gcaagaaatgatagaatgttacatgcaaatgacttatagta 301  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  11821528 gcaagaaatgatagaatgttacatgcaaatgacttatagta 11821568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 261 - 300
Target Start/End: Original strand, 17696579 - 17696618
Alignment:
Q  261 gcaagaaatgatagaatgttacatgcaaatgacttatagt 300  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  17696579 gcaagaaatgatagaatgttacatgcaaatgacttatagt 17696618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 261 - 300
Target Start/End: Complemental strand, 50068932 - 50068893
Alignment:
Q  261 gcaagaaatgatagaatgttacatgcaaatgacttatagt 300  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  50068932 gcaagaaatgatagaatgttacatgcaaatgacttatagt 50068893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 261 - 300
Target Start/End: Complemental strand, 47488693 - 47488654
Alignment:
Q  261 gcaagaaatgatagaatgttacatgcaaatgacttatagt 300  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  47488693 gcaagaaatgatagaatattacatgcaaatgacttatagt 47488654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 298
Target Start/End: Complemental strand, 21485167 - 21485130
Alignment:
Q  261 gcaagaaatgatagaatgttacatgcaaatgacttata 298  Q
    |||||| |||||| ||||||||||||||||||||||||    
T  21485167 gcaagatatgatacaatgttacatgcaaatgacttata 21485130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 261 - 297
Target Start/End: Original strand, 5764877 - 5764913
Alignment:
Q  261 gcaagaaatgatagaatgttacatgcaaatgacttat 297  Q
    ||||||||||||| ||||||||||| |||||||||||    
T  5764877 gcaagaaatgatacaatgttacatgtaaatgacttat 5764913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 261 - 297
Target Start/End: Original strand, 18842110 - 18842146
Alignment:
Q  261 gcaagaaatgatagaatgttacatgcaaatgacttat 297  Q
    ||||||||||||| ||||||||||| |||||||||||    
T  18842110 gcaagaaatgatacaatgttacatgtaaatgacttat 18842146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 261 - 297
Target Start/End: Complemental strand, 30310360 - 30310324
Alignment:
Q  261 gcaagaaatgatagaatgttacatgcaaatgacttat 297  Q
    |||||| |||||| |||||||||||||||||||||||    
T  30310360 gcaagatatgatacaatgttacatgcaaatgacttat 30310324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 195
Target Start/End: Original strand, 45688606 - 45688634
Alignment:
Q  167 ttttcacttaaattatgttggtatgatag 195  Q
    |||||||||||||||||||||||||||||    
T  45688606 ttttcacttaaattatgttggtatgatag 45688634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1763 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold1763
Description:

Target: scaffold1763; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 261 - 300
Target Start/End: Complemental strand, 54 - 15
Alignment:
Q  261 gcaagaaatgatagaatgttacatgcaaatgacttatagt 300  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  54 gcaagaaatgatagaatgttacatgcaaatgacttatagt 15  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 261 - 300
Target Start/End: Original strand, 2355820 - 2355859
Alignment:
Q  261 gcaagaaatgatagaatgttacatgcaaatgacttatagt 300  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  2355820 gcaagaaatgatagaatgttacatgcaaatgacttatagt 2355859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 261 - 300
Target Start/End: Complemental strand, 20379351 - 20379312
Alignment:
Q  261 gcaagaaatgatagaatgttacatgcaaatgacttatagt 300  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  20379351 gcaaaaaatgatagaatgttacatgcaaatgacttatagt 20379312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 261 - 300
Target Start/End: Complemental strand, 26603881 - 26603842
Alignment:
Q  261 gcaagaaatgatagaatgttacatgcaaatgacttatagt 300  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  26603881 gcaagaaatgatagaatgttacatgcaaataacttatagt 26603842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 261 - 300
Target Start/End: Original strand, 30360076 - 30360115
Alignment:
Q  261 gcaagaaatgatagaatgttacatgcaaatgacttatagt 300  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  30360076 gcaagaaatgagagaatgttacatgcaaatgacttatagt 30360115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 261 - 300
Target Start/End: Complemental strand, 48221410 - 48221371
Alignment:
Q  261 gcaagaaatgatagaatgttacatgcaaatgacttatagt 300  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  48221410 gcaagaaatgatagaatgttatatgcaaatgacttatagt 48221371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 298
Target Start/End: Original strand, 149763 - 149800
Alignment:
Q  261 gcaagaaatgatagaatgttacatgcaaatgacttata 298  Q
    ||||||||||||| ||||||||||| ||||||||||||    
T  149763 gcaagaaatgatataatgttacatgtaaatgacttata 149800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 298
Target Start/End: Complemental strand, 8726750 - 8726713
Alignment:
Q  261 gcaagaaatgatagaatgttacatgcaaatgacttata 298  Q
    ||||||||||||| ||||||||||| ||||||||||||    
T  8726750 gcaagaaatgatacaatgttacatgtaaatgacttata 8726713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 298
Target Start/End: Original strand, 11824357 - 11824394
Alignment:
Q  261 gcaagaaatgatagaatgttacatgcaaatgacttata 298  Q
    ||||||||||||| ||||||||||| ||||||||||||    
T  11824357 gcaagaaatgatacaatgttacatgtaaatgacttata 11824394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 298
Target Start/End: Original strand, 18146631 - 18146668
Alignment:
Q  261 gcaagaaatgatagaatgttacatgcaaatgacttata 298  Q
    ||||||||||||| ||||||||||| ||||||||||||    
T  18146631 gcaagaaatgatacaatgttacatgtaaatgacttata 18146668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 261 - 300
Target Start/End: Original strand, 3458355 - 3458394
Alignment:
Q  261 gcaagaaatgatagaatgttacatgcaaatgacttatagt 300  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  3458355 gcaagaaatgatagaatgttacatgcaaatgacttatagt 3458394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 261 - 300
Target Start/End: Original strand, 19399895 - 19399934
Alignment:
Q  261 gcaagaaatgatagaatgttacatgcaaatgacttatagt 300  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  19399895 gcaagaaatgatagaatgttacatgcaaatgacttatagt 19399934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 261 - 300
Target Start/End: Original strand, 40009079 - 40009118
Alignment:
Q  261 gcaagaaatgatagaatgttacatgcaaatgacttatagt 300  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  40009079 gcaagagatgatagaatgttacatgcaaatgacttatagt 40009118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 298
Target Start/End: Original strand, 12742388 - 12742425
Alignment:
Q  261 gcaagaaatgatagaatgttacatgcaaatgacttata 298  Q
    ||||||||||||| ||||||||||| ||||||||||||    
T  12742388 gcaagaaatgatacaatgttacatgtaaatgacttata 12742425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 298
Target Start/End: Original strand, 12805206 - 12805243
Alignment:
Q  261 gcaagaaatgatagaatgttacatgcaaatgacttata 298  Q
    ||||||||||||| ||||||||||| ||||||||||||    
T  12805206 gcaagaaatgatacaatgttacatgtaaatgacttata 12805243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 298
Target Start/End: Complemental strand, 36312487 - 36312450
Alignment:
Q  261 gcaagaaatgatagaatgttacatgcaaatgacttata 298  Q
    ||||||||||||| ||||||||||| ||||||||||||    
T  36312487 gcaagaaatgatacaatgttacatgtaaatgacttata 36312450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 261 - 297
Target Start/End: Original strand, 7081962 - 7081998
Alignment:
Q  261 gcaagaaatgatagaatgttacatgcaaatgacttat 297  Q
    |||||| |||||| |||||||||||||||||||||||    
T  7081962 gcaagatatgatacaatgttacatgcaaatgacttat 7081998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 261 - 297
Target Start/End: Original strand, 33370321 - 33370357
Alignment:
Q  261 gcaagaaatgatagaatgttacatgcaaatgacttat 297  Q
    ||||||||||||| ||||||||||| |||||||||||    
T  33370321 gcaagaaatgatacaatgttacatgtaaatgacttat 33370357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 261 - 300
Target Start/End: Complemental strand, 33449825 - 33449786
Alignment:
Q  261 gcaagaaatgatagaatgttacatgcaaatgacttatagt 300  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  33449825 gcaagaaatgatagaatgttacatgcaaatgacttatagt 33449786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 261 - 300
Target Start/End: Complemental strand, 53827369 - 53827330
Alignment:
Q  261 gcaagaaatgatagaatgttacatgcaaatgacttatagt 300  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  53827369 gcaagaaatgatagaatgttacatgcaaatgacttatagt 53827330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 261 - 296
Target Start/End: Complemental strand, 42950682 - 42950647
Alignment:
Q  261 gcaagaaatgatagaatgttacatgcaaatgactta 296  Q
    ||||||||||||||||||||||||||||||||||||    
T  42950682 gcaagaaatgatagaatgttacatgcaaatgactta 42950647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 261 - 300
Target Start/End: Original strand, 47065236 - 47065275
Alignment:
Q  261 gcaagaaatgatagaatgttacatgcaaatgacttatagt 300  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  47065236 gcaagtaatgatagaatgttacatgcaaatgacttatagt 47065275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 261 - 298
Target Start/End: Original strand, 42381820 - 42381857
Alignment:
Q  261 gcaagaaatgatagaatgttacatgcaaatgacttata 298  Q
    |||||||||||||||||||||||||||||||| |||||    
T  42381820 gcaagaaatgatagaatgttacatgcaaatgatttata 42381857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 261 - 298
Target Start/End: Original strand, 42382600 - 42382637
Alignment:
Q  261 gcaagaaatgatagaatgttacatgcaaatgacttata 298  Q
    |||||||||||||||||||||||||||||||| |||||    
T  42382600 gcaagaaatgatagaatgttacatgcaaatgatttata 42382637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 261 - 300
Target Start/End: Complemental strand, 44836157 - 44836118
Alignment:
Q  261 gcaagaaatgatagaatgttacatgcaaatgacttatagt 300  Q
    ||||||||| |||||||||||||||||||||| |||||||    
T  44836157 gcaagaaattatagaatgttacatgcaaatgatttatagt 44836118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 298
Target Start/End: Original strand, 19236979 - 19237016
Alignment:
Q  261 gcaagaaatgatagaatgttacatgcaaatgacttata 298  Q
    ||||||||||||| ||||||||||| ||||||||||||    
T  19236979 gcaagaaatgatacaatgttacatgtaaatgacttata 19237016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 261 - 297
Target Start/End: Original strand, 7953888 - 7953924
Alignment:
Q  261 gcaagaaatgatagaatgttacatgcaaatgacttat 297  Q
    ||||||||||||| ||||||||||| |||||||||||    
T  7953888 gcaagaaatgatacaatgttacatgtaaatgacttat 7953924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 261 - 297
Target Start/End: Complemental strand, 8633931 - 8633895
Alignment:
Q  261 gcaagaaatgatagaatgttacatgcaaatgacttat 297  Q
    ||||||||||||| ||||||||||| |||||||||||    
T  8633931 gcaagaaatgatacaatgttacatgtaaatgacttat 8633895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 261 - 297
Target Start/End: Complemental strand, 36721897 - 36721861
Alignment:
Q  261 gcaagaaatgatagaatgttacatgcaaatgacttat 297  Q
    |||||| |||||| |||||||||||||||||||||||    
T  36721897 gcaagatatgatacaatgttacatgcaaatgacttat 36721861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 261 - 297
Target Start/End: Original strand, 37281137 - 37281173
Alignment:
Q  261 gcaagaaatgatagaatgttacatgcaaatgacttat 297  Q
    |||||| |||||| |||||||||||||||||||||||    
T  37281137 gcaagatatgatacaatgttacatgcaaatgacttat 37281173  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 261 - 300
Target Start/End: Complemental strand, 12968967 - 12968928
Alignment:
Q  261 gcaagaaatgatagaatgttacatgcaaatgacttatagt 300  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  12968967 gcaagaaatgatagaatgttacatgcaaatgacttatagt 12968928  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 263 - 300
Target Start/End: Original strand, 42119576 - 42119613
Alignment:
Q  263 aagaaatgatagaatgttacatgcaaatgacttatagt 300  Q
    ||||||||||||||||||||||||||||||||||||||    
T  42119576 aagaaatgatagaatgttacatgcaaatgacttatagt 42119613  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 261 - 300
Target Start/End: Original strand, 22492816 - 22492855
Alignment:
Q  261 gcaagaaatgatagaatgttacatgcaaatgacttatagt 300  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  22492816 gcaagaaatgatagaatgttacatgcaaatgagttatagt 22492855  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 298
Target Start/End: Original strand, 16706499 - 16706536
Alignment:
Q  261 gcaagaaatgatagaatgttacatgcaaatgacttata 298  Q
    ||||||||||||| ||||||||||| ||||||||||||    
T  16706499 gcaagaaatgatacaatgttacatgtaaatgacttata 16706536  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 298
Target Start/End: Original strand, 16706642 - 16706679
Alignment:
Q  261 gcaagaaatgatagaatgttacatgcaaatgacttata 298  Q
    ||||||||||||| ||||||||||| ||||||||||||    
T  16706642 gcaagaaatgatacaatgttacatgtaaatgacttata 16706679  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 298
Target Start/End: Complemental strand, 17796637 - 17796600
Alignment:
Q  261 gcaagaaatgatagaatgttacatgcaaatgacttata 298  Q
    |||||| |||||| ||||||||||||||||||||||||    
T  17796637 gcaagatatgatacaatgttacatgcaaatgacttata 17796600  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 298
Target Start/End: Original strand, 18878185 - 18878222
Alignment:
Q  261 gcaagaaatgatagaatgttacatgcaaatgacttata 298  Q
    ||||||||||||| ||||||||||| ||||||||||||    
T  18878185 gcaagaaatgatacaatgttacatgtaaatgacttata 18878222  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 298
Target Start/End: Original strand, 20147795 - 20147832
Alignment:
Q  261 gcaagaaatgatagaatgttacatgcaaatgacttata 298  Q
    ||||||||||||| ||||||||||| ||||||||||||    
T  20147795 gcaagaaatgatacaatgttacatgtaaatgacttata 20147832  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 298
Target Start/End: Complemental strand, 27650968 - 27650931
Alignment:
Q  261 gcaagaaatgatagaatgttacatgcaaatgacttata 298  Q
    ||||||||||||| ||||||||||| ||||||||||||    
T  27650968 gcaagaaatgatacaatgttacatgtaaatgacttata 27650931  T

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Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 195
Target Start/End: Complemental strand, 12969057 - 12969029
Alignment:
Q  167 ttttcacttaaattatgttggtatgatag 195  Q
    |||||||||||||||||||||||||||||    
T  12969057 ttttcacttaaattatgttggtatgatag 12969029  T

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Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 195
Target Start/End: Complemental strand, 17796882 - 17796854
Alignment:
Q  167 ttttcacttaaattatgttggtatgatag 195  Q
    |||||||||||||||||||||||||||||    
T  17796882 ttttcacttaaattatgttggtatgatag 17796854  T

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Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 261 - 297
Target Start/End: Complemental strand, 42241631 - 42241595
Alignment:
Q  261 gcaagaaatgatagaatgttacatgcaaatgacttat 297  Q
    |||||| |||||| |||||||||||||||||||||||    
T  42241631 gcaagatatgatacaatgttacatgcaaatgacttat 42241595  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 263 - 300
Target Start/End: Complemental strand, 33164210 - 33164173
Alignment:
Q  263 aagaaatgatagaatgttacatgcaaatgacttatagt 300  Q
    ||||||||||||||||||||||||||||||||||||||    
T  33164210 aagaaatgatagaatgttacatgcaaatgacttatagt 33164173  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 298
Target Start/End: Original strand, 3392977 - 3393014
Alignment:
Q  261 gcaagaaatgatagaatgttacatgcaaatgacttata 298  Q
    ||||||||||||| ||||||||||| ||||||||||||    
T  3392977 gcaagaaatgatacaatgttacatgtaaatgacttata 3393014  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 298
Target Start/End: Complemental strand, 23125058 - 23125021
Alignment:
Q  261 gcaagaaatgatagaatgttacatgcaaatgacttata 298  Q
    ||||||||||||| ||||||||||| ||||||||||||    
T  23125058 gcaagaaatgatacaatgttacatgtaaatgacttata 23125021  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 261 - 297
Target Start/End: Original strand, 21711231 - 21711267
Alignment:
Q  261 gcaagaaatgatagaatgttacatgcaaatgacttat 297  Q
    |||||| |||||| |||||||||||||||||||||||    
T  21711231 gcaagatatgatacaatgttacatgcaaatgacttat 21711267  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 261 - 297
Target Start/End: Original strand, 24606423 - 24606459
Alignment:
Q  261 gcaagaaatgatagaatgttacatgcaaatgacttat 297  Q
    ||||||||||||| ||||||||||| |||||||||||    
T  24606423 gcaagaaatgatacaatgttacatgtaaatgacttat 24606459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 261 - 297
Target Start/End: Complemental strand, 32938438 - 32938402
Alignment:
Q  261 gcaagaaatgatagaatgttacatgcaaatgacttat 297  Q
    ||||||||||||| ||||||||||| |||||||||||    
T  32938438 gcaagaaatgatacaatgttacatgtaaatgacttat 32938402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 261 - 300
Target Start/End: Complemental strand, 28706812 - 28706773
Alignment:
Q  261 gcaagaaatgatagaatgttacatgcaaatgacttatagt 300  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  28706812 gcaagaaataatagaatgttacatgcaaatgacttatagt 28706773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 261 - 300
Target Start/End: Complemental strand, 33800204 - 33800165
Alignment:
Q  261 gcaagaaatgatagaatgttacatgcaaatgacttatagt 300  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  33800204 gcaagaaatcatagaatgttacatgcaaatgacttatagt 33800165  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 261 - 300
Target Start/End: Complemental strand, 43640681 - 43640642
Alignment:
Q  261 gcaagaaatgatagaatgttacatgcaaatgacttatagt 300  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  43640681 gcaagaaatgatagaatgttacatacaaatgacttatagt 43640642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 261 - 297
Target Start/End: Original strand, 43692818 - 43692854
Alignment:
Q  261 gcaagaaatgatagaatgttacatgcaaatgacttat 297  Q
    |||||| |||||| |||||||||||||||||||||||    
T  43692818 gcaagatatgatacaatgttacatgcaaatgacttat 43692854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 261 - 300
Target Start/End: Complemental strand, 35060625 - 35060586
Alignment:
Q  261 gcaagaaatgatagaatgttacatgcaaatgacttatagt 300  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  35060625 gcaagaaatgataaaatgttacatgcaaatgacttatagt 35060586  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 298
Target Start/End: Complemental strand, 3098038 - 3098001
Alignment:
Q  261 gcaagaaatgatagaatgttacatgcaaatgacttata 298  Q
    ||||||||||||| ||||||||||| ||||||||||||    
T  3098038 gcaagaaatgatacaatgttacatgtaaatgacttata 3098001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 298
Target Start/End: Original strand, 28050935 - 28050972
Alignment:
Q  261 gcaagaaatgatagaatgttacatgcaaatgacttata 298  Q
    ||||||||||||| ||||||||||| ||||||||||||    
T  28050935 gcaagaaatgatacaatgttacatgtaaatgacttata 28050972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 195
Target Start/End: Complemental strand, 14483538 - 14483510
Alignment:
Q  167 ttttcacttaaattatgttggtatgatag 195  Q
    |||||||||||||||||||||||||||||    
T  14483538 ttttcacttaaattatgttggtatgatag 14483510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 195
Target Start/End: Original strand, 28050845 - 28050873
Alignment:
Q  167 ttttcacttaaattatgttggtatgatag 195  Q
    |||||||||||||||||||||||||||||    
T  28050845 ttttcacttaaattatgttggtatgatag 28050873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 195
Target Start/End: Complemental strand, 35060720 - 35060688
Alignment:
Q  163 taaattttcacttaaattatgttggtatgatag 195  Q
    |||| ||||||||||||||||||||||||||||    
T  35060720 taaactttcacttaaattatgttggtatgatag 35060688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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