View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1345_high_177 (Length: 291)
Name: NF1345_high_177
Description: NF1345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1345_high_177 |
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Alignment Details
Target: chr3 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 15981776 - 15981494
Alignment:
| Q |
1 |
cttcaaccctgtcaactttgatatccttcgagatgtgtggtatttgagataacgagtacttgtctacagacctccttatttttctccgaaacgttatcca |
100 |
Q |
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| T |
15981776 |
cttcaaccctgtcaactttgatatccttcgagacgtgtggtatttgagataacgagtacttgtctacagacctccttgtttttctccaaaacgttatcca |
15981677 |
T |
|
| Q |
101 |
tatagataacaaacaaagaatcagaactataaatgcaaaaacaccaattcctatcaaaacccataatctcaaacccaaaaatgaagtcttcttcgacaat |
200 |
Q |
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| T |
15981676 |
tatagataacaaacaaagaatcagaactataaatgcaaaaacaccaattcctatcaaaacccataatctcaaacccaaaaatgaagtcttcttcgacaat |
15981577 |
T |
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| Q |
201 |
tccattttcaaagaaccgttggaagacataattcaatgctaaaactcaatctttatcctccaaattcttctcacagtataatc |
283 |
Q |
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| T |
15981576 |
tccattttcaaagaaccgttggaagacataattcaatgctaaaattcaatctttatcctccaaattcttctcacagtataatc |
15981494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 84 - 204
Target Start/End: Complemental strand, 39827853 - 39827733
Alignment:
| Q |
84 |
ctccgaaacgttatccatatagataacaaacaaagaatcagaactataaatgcaaaaacaccaattcctatcaaaacccataatctcaaacccaaaaatg |
183 |
Q |
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||||||||| | | ||||||||| || | || ||||||||| |||||||||||| ||| || || || |||||||||||| | ||||||||||||||| |
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| T |
39827853 |
ctccgaaacatcacccatatagacaatataccaagaatcagcactataaatgcaccaacccctatcccaatcaaaacccatcttttcaaacccaaaaatg |
39827754 |
T |
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| Q |
184 |
aagtcttcttcgacaattcca |
204 |
Q |
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| T |
39827753 |
acgtcttctttgacaattcca |
39827733 |
T |
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