View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1345_high_181 (Length: 290)
Name: NF1345_high_181
Description: NF1345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1345_high_181 |
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| [»] scaffold0428 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 7501921 - 7501644
Alignment:
| Q |
1 |
ccttgtttaaaaattagtttcatcttttgaaatggccagtaattgatatgacttgtagaacactacagcaaacttttgtaggaaactcccattaacagaa |
100 |
Q |
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| T |
7501921 |
ccttgtttaaaaattagtttcatcttttgaaatgtccagtaattgatatgacttgtagaacactacaacaaacttttgcaggaaactcccattaacagaa |
7501822 |
T |
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| Q |
101 |
atatgaatgaaaaatgattcaatttctggtattttgtaaatgatacaactcggttgagttttatgactaatgagtgttaattgttaaatatccgttatat |
200 |
Q |
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| T |
7501821 |
atatgaatgaaaaatgattcaatttctggtattttgtaaatgatacaactcggttgagttttatgactaatgagtgttaattgttaaatatccgttatat |
7501722 |
T |
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| Q |
201 |
tggcactatactgccacactgtatccgaatttagggtagacggtacgaaatccaacatggtttagcaactttgatatt |
278 |
Q |
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| T |
7501721 |
tggcactatactgccataccgtatcggaatttagggtagacgatacgaaatccaacatggtttagcaactttgatatt |
7501644 |
T |
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Target: chr1; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 70 - 165
Target Start/End: Complemental strand, 7498830 - 7498736
Alignment:
| Q |
70 |
aaacttttgtaggaaactcccattaacagaaatatgaatgaaaaatgattcaatttctggtattttgtaaatgatacaactcggttgagttttatg |
165 |
Q |
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| T |
7498830 |
aaacttttgtaggaaactcc-agtaattgaaatatcgatgaagaatgatacaatttctggtattttctaaatgatacaacttggttgagttttatg |
7498736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 130 - 172
Target Start/End: Original strand, 13408 - 13450
Alignment:
| Q |
130 |
tattttgtaaatgatacaactcggttgagttttatgactaatg |
172 |
Q |
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| T |
13408 |
tattttgtaaatgatacaactcggatgagttttatgactaatg |
13450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 130 - 172
Target Start/End: Complemental strand, 33280845 - 33280803
Alignment:
| Q |
130 |
tattttgtaaatgatacaactcggttgagttttatgactaatg |
172 |
Q |
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| T |
33280845 |
tattttgtaaatgatacaactcggatgagttttatgactaatg |
33280803 |
T |
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