View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1345_high_193 (Length: 275)

Name: NF1345_high_193
Description: NF1345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1345_high_193
NF1345_high_193
[»] chr5 (3 HSPs)
chr5 (1-184)||(3030666-3030849)
chr5 (12-134)||(3021499-3021618)
chr5 (12-134)||(3038368-3038487)
[»] chr2 (1 HSPs)
chr2 (15-184)||(32752418-32752584)


Alignment Details
Target: chr5 (Bit Score: 176; Significance: 7e-95; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 3030849 - 3030666
Alignment:
Q  1 ttactaccataataatttgtaggggaaggaggattagaacgtaaaggctcattagcaatactcaaaagcaaattatgatgcatgtcttcaaattctgacg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3030849 ttactaccataataatttgtaggggaaggaggattagaacgtaaaggctcattagcaatactcaaaagcaaattatgatgcatgtcttcaaattctgacg 3030750  T
Q  101 atagaactggaacttgtacttctagcacattctttttagaatcttccatatccatatccacagcatccctatcactcctctgat 184  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  3030749 atagaactggaacttgtacttctagcacattctttttagaattttccatattcatatccacagcatccctatcactcctctgat 3030666  T

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Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 12 - 134
Target Start/End: Complemental strand, 3021618 - 3021499
Alignment:
Q  12 ataatttgtaggggaaggaggattagaacgtaaaggctcattagcaatactcaaaagcaaattatgatgcatgtcttcaaattctgacgatagaactgga 111  Q
    ||||||||| ||||||||||||   ||||||||||||||||| |||||||| | ||||||   |||||||||||||||||||||||| || |  ||||||    
T  3021618 ataatttgttggggaaggaggagctgaacgtaaaggctcattggcaatacttagaagcaa---atgatgcatgtcttcaaattctgatgacaccactgga 3021522  T
Q  112 acttgtacttctagcacattctt 134  Q
    || ||| ||||||||| ||||||    
T  3021521 acctgtgcttctagcatattctt 3021499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 12 - 134
Target Start/End: Complemental strand, 3038487 - 3038368
Alignment:
Q  12 ataatttgtaggggaaggaggattagaacgtaaaggctcattagcaatactcaaaagcaaattatgatgcatgtcttcaaattctgacgatagaactgga 111  Q
    ||||||||| ||||||||||||   ||||||||||||||||| |||||||| | ||||||   |||||||||||||||||||||||| || |  ||||||    
T  3038487 ataatttgttggggaaggaggagctgaacgtaaaggctcattggcaatacttagaagcaa---atgatgcatgtcttcaaattctgatgacaccactgga 3038391  T
Q  112 acttgtacttctagcacattctt 134  Q
    || ||| ||||||||| ||||||    
T  3038390 acctgtgcttctagcatattctt 3038368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 136; Significance: 5e-71; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 15 - 184
Target Start/End: Complemental strand, 32752584 - 32752418
Alignment:
Q  15 atttgtaggggaaggaggattagaacgtaaaggctcattagcaatactcaaaagcaaattatgatgcatgtcttcaaattctgacgatagaactggaact 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||   ||||||||| ||||||||||||||||||||||||    
T  32752584 atttgtaggggaaggaggattagaacgtaaaggctcattagcaatactcaaaagcaaatcatg---catgtcttccaattctgacgatagaactggaact 32752488  T
Q  115 tgtacttctagcacattctttttagaatcttccatatccatatccacagcatccctatcactcctctgat 184  Q
    |||||||||| ||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||    
T  32752487 tgtacttctaccacattctttttagaatcttccatatccataaccactgcatccctatcactcctctgat 32752418  T

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