View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1345_high_2 (Length: 979)
Name: NF1345_high_2
Description: NF1345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1345_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 850; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 850; E-Value: 0
Query Start/End: Original strand, 20 - 893
Target Start/End: Complemental strand, 29838672 - 29837799
Alignment:
| Q |
20 |
aaagaatatattaactacttttcagtttaatttgcctattgcgacaaattagcaattactagtcattaaatgtacatgcacgcatgcacgatcacagaag |
119 |
Q |
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| T |
29838672 |
aaagaatatattaactacttttcagtttaatttgcctattgcgacaaattagcaattactagtcattaaatgtacatgcacgcatgcacgatcacagaag |
29838573 |
T |
|
| Q |
120 |
cacacagaagaaacaagatcatttgataatgtcaagttattacgcggttgtcaccatttatacacgatttgcaagcatttaccaatcattttgtagtatt |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |
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| T |
29838572 |
cacacagaagaaacaagatcatttgataatgtcaagttattacgcggttgtcaccatttatacgcgatttgcaagcatttaccaatctttttgtagtatt |
29838473 |
T |
|
| Q |
220 |
acttggtacataccatctgatactctctgctgatgaccgtcactggatgatcttggaagcagcagcaaattagcctttgacagtaatagcattgacatca |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29838472 |
acttggtacataccatctgatactctctgctgatgaccgtcactggatgatcttggaagcagcagcaaattagcctttgacagtaatagcattgacatca |
29838373 |
T |
|
| Q |
320 |
aatgcaaaaccgacaacacctcataccaagcattagacatggttgtttcctgtaaagagcgcacaaaagtaaccggaacaaattgatcagcattcttctc |
419 |
Q |
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| T |
29838372 |
aatgcaaaaccgacaacacctcataccaagcattagacatggttgtttcctgtaaagagcgcacaaaagtaaccggaacaaattgatcagcattcttctc |
29838273 |
T |
|
| Q |
420 |
tataggaagtaaattaaactcaaaaatatgtatgaattttagaaggtacctctttttcatcttcttggttcatccaaacaaactgtactttgtattgtaa |
519 |
Q |
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| T |
29838272 |
tataggaagtaaattaaactcaaaaatatgtatgaattttagaaggtacctctttttcatcttcttggttcatccaaacaaactgtactttgtattgtaa |
29838173 |
T |
|
| Q |
520 |
atgacttcctacaccataaagataagtaataataatcagtactttgtcttacagagagcatacatcaaacaccggggtctagcacaagtggttggtgcgc |
619 |
Q |
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| T |
29838172 |
atgacttcctacaccataaagataagtaataataatcagtattttgtcttacagagagcatacatcaaacaccggggtctagcacaagtggttggtgcgc |
29838073 |
T |
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| Q |
620 |
atggtgtgtaaatggtttaaacatcgaggtactaacgaacaaacacaagatataccgtctttaactaatcctagaagaaccggcaagtaatcttcaagag |
719 |
Q |
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| T |
29838072 |
atggtgtgtaaatggtttaaacatcgaggtactaacgaacaaacacaagatttaccgtctttaactaatcctagaagaaccggcaagtaatcttcaagag |
29837973 |
T |
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| Q |
720 |
cctgaagaagattagcgagcgttgaaccacctgaagatgaaatcaaacgacacagatgcatcaataaattacaacacaacttatatatcatagaataatt |
819 |
Q |
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| T |
29837972 |
cctgaagaagattagcgagcgttgaaccacctgaagatgaaatcacacgacaccgatgcatcaataaattacaacacaacttatatatcatagaataatt |
29837873 |
T |
|
| Q |
820 |
ttacctttgctaaaaaactaaccatgttgagtaacactttttctttttgttcttgtaattgtaggtccttcttg |
893 |
Q |
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| T |
29837872 |
ttacctttgctaaaaaactaaccatgttgagtaacactttttctttttgttcttgtaattgtaggtccttcttg |
29837799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 4e-19; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 230 - 371
Target Start/End: Original strand, 34628143 - 34628284
Alignment:
| Q |
230 |
taccatctgatactctctgctgatgaccgtcactggatgatcttggaagcagcagcaaattagcctttgacagtaatagcattgacatcaaatgcaaaac |
329 |
Q |
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|||| ||||||||| | |||||||||| || |||||| ||||||||| || | |||||||||| ||| || ||||| ||| |||||| ||||| || |
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| T |
34628143 |
taccttctgatacttttggctgatgaccatcggtggatgttcttggaagaagtaataaattagcctgtgatagcaatagtgttgccatcaagtgcaagac |
34628242 |
T |
|
| Q |
330 |
cgacaacacctcataccaagcattagacatggttgtttcctg |
371 |
Q |
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| T |
34628243 |
tgacaacacttcataccaagcattagacatggctgtttcctg |
34628284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 836 - 894
Target Start/End: Original strand, 34628690 - 34628748
Alignment:
| Q |
836 |
actaaccatgttgagtaacactttttctttttgttcttgtaattgtaggtccttcttga |
894 |
Q |
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| T |
34628690 |
actaaccatgttgagttgcactttttctttttgttcttgtaattgtaggaccttcttga |
34628748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 672 - 763
Target Start/End: Original strand, 34628535 - 34628626
Alignment:
| Q |
672 |
taccgtctttaactaatcctagaagaaccggcaagtaatcttcaagagcctgaagaagattagcgagcgttgaaccacctgaagatgaaatc |
763 |
Q |
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|||| ||||| |||||||| | ||| ||||| ||||| |||||||||||||| ||||||| ||| || |||||||| ||||| ||||||||| |
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| T |
34628535 |
taccatctttgactaatcccaaaagtaccggtaagtagtcttcaagagcctgtagaagatcagccagtgttgaacctcctgaggatgaaatc |
34628626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 466 - 526
Target Start/End: Original strand, 34628391 - 34628451
Alignment:
| Q |
466 |
tacctctttttcatcttcttggttcatccaaacaaactgtactttgtattgtaaatgactt |
526 |
Q |
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||||||| |||||| || || |||||||||||||| |||||||||||||||||||||||| |
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| T |
34628391 |
tacctctgcttcatcctcctgattcatccaaacaaattgtactttgtattgtaaatgactt |
34628451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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