View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1345_high_216 (Length: 253)

Name: NF1345_high_216
Description: NF1345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1345_high_216
NF1345_high_216
[»] chr2 (6 HSPs)
chr2 (45-253)||(35371043-35371250)
chr2 (134-196)||(28282670-28282732)
chr2 (134-196)||(16576268-16576330)
chr2 (122-216)||(16576425-16576519)
chr2 (134-199)||(16863476-16863541)
chr2 (135-188)||(35373728-35373781)
[»] chr5 (5 HSPs)
chr5 (122-195)||(2243310-2243383)
chr5 (150-216)||(7113758-7113824)
chr5 (134-195)||(7215291-7215351)
chr5 (124-163)||(972839-972878)
chr5 (124-160)||(14258907-14258943)
[»] chr7 (2 HSPs)
chr7 (130-189)||(34891381-34891440)
chr7 (125-219)||(34891544-34891638)
[»] chr8 (2 HSPs)
chr8 (130-218)||(32166606-32166694)
chr8 (124-199)||(37010335-37010410)
[»] chr4 (3 HSPs)
chr4 (144-216)||(22050727-22050796)
chr4 (130-187)||(54000218-54000275)
chr4 (147-203)||(25062352-25062408)
[»] chr1 (5 HSPs)
chr1 (122-200)||(7749011-7749089)
chr1 (134-195)||(68117-68178)
chr1 (134-195)||(52432681-52432742)
chr1 (61-95)||(39734322-39734356)
chr1 (122-195)||(35956991-35957064)
[»] chr3 (2 HSPs)
chr3 (134-203)||(20519282-20519351)
chr3 (122-187)||(42091793-42091858)


Alignment Details
Target: chr2 (Bit Score: 128; Significance: 3e-66; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 45 - 253
Target Start/End: Original strand, 35371043 - 35371250
Alignment:
Q  45 aaagttcggggggacc-tggcctctgttggtcccctttctagcttcatctctggtgtcacgaatagannnnnnnnnnnacaattatttatcattttcata 143  Q
    ||||||| |||||||| |||||||||||||||||| |||||||| ||||| ||||||||||||||||           ||||| ||||| ||||||||||    
T  35371043 aaagttcagggggaccgtggcctctgttggtcccccttctagctccatctttggtgtcacgaatagattttttttt--acaatcatttaccattttcata 35371140  T
Q  144 tcaagaacatcaaacttctttattaccttcatttaatatgtgatctccatctcctttgtttgataattgaatcttacctttaaaactatatcatgctatg 243  Q
    ||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35371141 tcaagaacatcaaacttctttgttaccttcatttaacatgtgatttccatctcctttgtttgataattgaatcttacctttaaaactatatcatgctatg 35371240  T
Q  244 ctaagaaaca 253  Q
    ||||||||||    
T  35371241 ctaagaaaca 35371250  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 134 - 196
Target Start/End: Original strand, 28282670 - 28282732
Alignment:
Q  134 cattttcatatcaagaacatcaaacttctttattaccttcatttaatatgtgatctccatctc 196  Q
    ||||||||| || | ||||||||||||||||||   ||||||| |||||||||||||||||||    
T  28282670 cattttcatctccataacatcaaacttctttatctgcttcattcaatatgtgatctccatctc 28282732  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 196
Target Start/End: Original strand, 16576268 - 16576330
Alignment:
Q  134 cattttcatatcaagaacatcaaacttctttattaccttcatttaatatgtgatctccatctc 196  Q
    ||||||| | |||||||||||||||||||| ||  |||||||| || ||||||||||| ||||    
T  16576268 cattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctc 16576330  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 216
Target Start/End: Original strand, 16576425 - 16576519
Alignment:
Q  122 acaattatttatcattttcatatcaagaacatcaaacttctttattaccttcatttaatatgtgatctccatctcctttgtttgataattgaatc 216  Q
    ||||| ||||||||||||||| |||| |||| ||||| |||| ||  ||||||||||| |||  |||||||||| ||| |||  || ||||||||    
T  16576425 acaatcatttatcattttcatttcaaaaacaacaaacatcttcatatccttcatttaacatgcaatctccatcttcttcgttacattattgaatc 16576519  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 134 - 199
Target Start/End: Original strand, 16863476 - 16863541
Alignment:
Q  134 cattttcatatcaagaacatcaaacttctttattaccttcatttaatatgtgatctccatctcctt 199  Q
    ||||||||| |||||||||||||| ||||| ||   ||| ||| |||||||||||| |||||||||    
T  16863476 cattttcatctcaagaacatcaaatttcttcatcttctttattcaatatgtgatctacatctcctt 16863541  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 135 - 188
Target Start/End: Original strand, 35373728 - 35373781
Alignment:
Q  135 attttcatatcaagaacatcaaacttctttattaccttcatttaatatgtgatc 188  Q
    |||||||| |||||||| |||||||||||  ||||||||||| || ||||||||    
T  35373728 attttcatctcaagaacgtcaaacttcttctttaccttcattcaacatgtgatc 35373781  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 122 - 195
Target Start/End: Complemental strand, 2243383 - 2243310
Alignment:
Q  122 acaattatttatcattttcatatcaagaacatcaaacttctttattaccttcatttaatatgtgatctccatct 195  Q
    ||||||| ||| ||||||||| |||||||||||||||||||| ||  |||||||| || |||||||||||||||    
T  2243383 acaattagttaccattttcatctcaagaacatcaaacttcttcatatccttcattcaacatgtgatctccatct 2243310  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 150 - 216
Target Start/End: Complemental strand, 7113824 - 7113758
Alignment:
Q  150 acatcaaacttctttattaccttcatttaatatgtgatctccatctcctttgtttgataattgaatc 216  Q
    |||||||| |||||||| |||||||||||| ||||||| | |||||| ||||||  |||||||||||    
T  7113824 acatcaaatttctttatcaccttcatttaagatgtgatttacatctcttttgttccataattgaatc 7113758  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 134 - 195
Target Start/End: Complemental strand, 7215351 - 7215291
Alignment:
Q  134 cattttcatatcaagaacatcaaacttctttattaccttcatttaatatgtgatctccatct 195  Q
    ||||||||| ||||||||||||||||||||| |   ||||||| ||||||||||||||||||    
T  7215351 cattttcatctcaagaacatcaaacttcttt-tcttcttcattgaatatgtgatctccatct 7215291  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 124 - 163
Target Start/End: Original strand, 972839 - 972878
Alignment:
Q  124 aattatttatcattttcatatcaagaacatcaaacttctt 163  Q
    ||||| ||||||||||||| ||||||||||||||||||||    
T  972839 aattagttatcattttcatctcaagaacatcaaacttctt 972878  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 160
Target Start/End: Complemental strand, 14258943 - 14258907
Alignment:
Q  124 aattatttatcattttcatatcaagaacatcaaactt 160  Q
    ||||||||||||||||||| |||| ||||||||||||    
T  14258943 aattatttatcattttcatctcaaaaacatcaaactt 14258907  T

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Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 130 - 189
Target Start/End: Original strand, 34891381 - 34891440
Alignment:
Q  130 ttatcattttcatatcaagaacatcaaacttctttattaccttcatttaatatgtgatct 189  Q
    ||||||||||||||| |||||||||||||||||||||   |||||||||| |||||||||    
T  34891381 ttatcattttcatattaagaacatcaaacttctttatcttcttcatttaacatgtgatct 34891440  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 125 - 219
Target Start/End: Original strand, 34891544 - 34891638
Alignment:
Q  125 attatttatcattttcatatcaagaacatcaaacttctttattaccttcatttaatatgtgatctccatctcctttgtttgataattgaatctta 219  Q
    |||| |||||||||| || |||||||||||||| ||||| ||  |||||||| || ||||||||||||| | ||| |||  | ||||||||||||    
T  34891544 attagttatcattttgatctcaagaacatcaaatttcttcatctccttcattcaacatgtgatctccatttgcttcgttataaaattgaatctta 34891638  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 130 - 218
Target Start/End: Complemental strand, 32166694 - 32166606
Alignment:
Q  130 ttatcattttcatatcaagaacatcaaacttctttattaccttcatttaatatgtgatctccatctcctttgtttgataattgaatctt 218  Q
    ||||||||||||| |||||||||||||||||||| ||  |||| ||| || |||| |||| |||||| || |||| | |||||||||||    
T  32166694 ttatcattttcatctcaagaacatcaaacttcttcatctcctttattcaacatgtaatcttcatctctttcgttttagaattgaatctt 32166606  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 124 - 199
Target Start/End: Complemental strand, 37010410 - 37010335
Alignment:
Q  124 aattatttatcattttcatatcaagaacatcaaacttctttattaccttcatttaatatgtgatctccatctcctt 199  Q
    ||||| ||| ||||||||| |||| |||||||||||| || ||| | ||||||||| |||||||||| ||||||||    
T  37010410 aattagttaccattttcatctcaaaaacatcaaacttattcatttctttcatttaacatgtgatctctatctcctt 37010335  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 144 - 216
Target Start/End: Original strand, 22050727 - 22050796
Alignment:
Q  144 tcaagaacatcaaacttctttattaccttcatttaatatgtgatctccatctcctttgtttgataattgaatc 216  Q
    |||| ||||||||||||||| ||| ||||||||||| ||||||||||||   ||||||||| ||||| |||||    
T  22050727 tcaacaacatcaaacttcttcatttccttcatttaacatgtgatctcca---cctttgtttcataatcgaatc 22050796  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 130 - 187
Target Start/End: Complemental strand, 54000275 - 54000218
Alignment:
Q  130 ttatcattttcatatcaagaacatcaaacttctttattaccttcatttaatatgtgat 187  Q
    |||||||||| || | || ||||||||||||||||||  ||||||||||| |||||||    
T  54000275 ttatcatttttatcttaaaaacatcaaacttctttatctccttcatttaagatgtgat 54000218  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 203
Target Start/End: Original strand, 25062352 - 25062408
Alignment:
Q  147 agaacatcaaacttctttattaccttcatttaatatgtgatctccatctcctttgtt 203  Q
    ||||||||||||||||| ||   ||||||| || ||||||||| |||||||||||||    
T  25062352 agaacatcaaacttcttcatctgcttcattaaacatgtgatcttcatctcctttgtt 25062408  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 122 - 200
Target Start/End: Original strand, 7749011 - 7749089
Alignment:
Q  122 acaattatttatcattttcatatcaagaacatcaaacttctttattaccttcatttaatatgtgatctccatctccttt 200  Q
    ||||| || ||| |||||||| |||||||||||||| ||||| |||  |||  ||||| ||||||||||||||||||||    
T  7749011 acaatcatatattattttcatctcaagaacatcaaatttcttcattttctttgtttaacatgtgatctccatctccttt 7749089  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 134 - 195
Target Start/End: Original strand, 68117 - 68178
Alignment:
Q  134 cattttcatatcaagaacatcaaacttctttattaccttcatttaatatgtgatctccatct 195  Q
    |||||| || ||||||||||| |||||||| ||  ||||||||||| |||||||||||||||    
T  68117 catttttatttcaagaacatctaacttcttcatctccttcatttaacatgtgatctccatct 68178  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 134 - 195
Target Start/End: Original strand, 52432681 - 52432742
Alignment:
Q  134 cattttcatatcaagaacatcaaacttctttattaccttcatttaatatgtgatctccatct 195  Q
    ||||||||| |||||||||| ||||||||| ||  ||||||||||| | |||||||||||||    
T  52432681 cattttcatctcaagaacattaaacttcttcatctccttcatttaacaagtgatctccatct 52432742  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 95
Target Start/End: Complemental strand, 39734356 - 39734322
Alignment:
Q  61 tggcctctgttggtcccctttctagcttcatctct 95  Q
    |||||||||||||||||| ||||||||||||||||    
T  39734356 tggcctctgttggtcccccttctagcttcatctct 39734322  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 122 - 195
Target Start/End: Original strand, 35956991 - 35957064
Alignment:
Q  122 acaattatttatcattttcatatcaagaacatcaaacttctttattaccttcatttaatatgtgatctccatct 195  Q
    ||||||| ||| |||||| || |||| |||||||||||| |  ||| | || ||||||||||||||||||||||    
T  35956991 acaattaattaccatttttatctcaaaaacatcaaacttttccatttcttttatttaatatgtgatctccatct 35957064  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 134 - 203
Target Start/End: Complemental strand, 20519351 - 20519282
Alignment:
Q  134 cattttcatatcaagaacatcaaacttctttattaccttcatttaatatgtgatctccatctcctttgtt 203  Q
    ||||||||| |||||||| ||||| ||||| ||  | |||||| || |||||||||||||||||||||||    
T  20519351 cattttcatctcaagaacgtcaaatttcttcatctctttcattaaacatgtgatctccatctcctttgtt 20519282  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 122 - 187
Target Start/End: Complemental strand, 42091858 - 42091793
Alignment:
Q  122 acaattatttatcattttcatatcaagaacatcaaacttctttattaccttcatttaatatgtgat 187  Q
    ||||||| ||||||||||||| |||| |||||||||||| || ||  | ||||||||| |||||||    
T  42091858 acaattaattatcattttcatctcaaaaacatcaaactttttcatctctttcatttaacatgtgat 42091793  T

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