View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1345_high_229 (Length: 251)

Name: NF1345_high_229
Description: NF1345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1345_high_229
NF1345_high_229
[»] chr1 (12 HSPs)
chr1 (1-132)||(23182235-23182368)
chr1 (1-76)||(4977555-4977630)
chr1 (1-76)||(50880897-50880972)
chr1 (75-128)||(4977317-4977370)
chr1 (1-76)||(5316108-5316183)
chr1 (1-76)||(21741545-21741620)
chr1 (75-127)||(5316300-5316352)
chr1 (13-76)||(50881019-50881082)
chr1 (75-128)||(21741365-21741418)
chr1 (77-128)||(50881211-50881262)
chr1 (13-54)||(4977399-4977440)
chr1 (13-54)||(5316230-5316271)
[»] chr8 (3 HSPs)
chr8 (1-132)||(45472615-45472753)
chr8 (1-73)||(41878518-41878590)
chr8 (75-128)||(41878720-41878773)
[»] chr5 (10 HSPs)
chr5 (1-76)||(23285542-23285617)
chr5 (1-76)||(27078542-27078617)
chr5 (1-76)||(22987101-22987176)
chr5 (75-127)||(23285369-23285421)
chr5 (75-128)||(27078734-27078787)
chr5 (75-128)||(30853820-30853873)
chr5 (1-61)||(16592486-16592546)
chr5 (1-76)||(30853619-30853693)
chr5 (75-118)||(22986932-22986975)
chr5 (13-54)||(23285450-23285491)
[»] chr4 (16 HSPs)
chr4 (1-76)||(23510470-23510545)
chr4 (1-75)||(9579110-9579184)
chr4 (1-75)||(9584805-9584879)
chr4 (1-75)||(48208799-48208873)
chr4 (1-73)||(54779788-54779860)
chr4 (1-76)||(10978456-10978531)
chr4 (1-76)||(35780166-35780241)
chr4 (75-128)||(47128527-47128580)
chr4 (75-128)||(54779970-54780023)
chr4 (1-76)||(34769191-34769266)
chr4 (1-76)||(47128335-47128410)
chr4 (75-128)||(10431065-10431118)
chr4 (75-128)||(23510291-23510344)
chr4 (75-132)||(34769007-34769064)
chr4 (75-128)||(35779987-35780039)
chr4 (13-54)||(47128457-47128498)
[»] chr3 (4 HSPs)
chr3 (1-76)||(8073704-8073779)
chr3 (1-72)||(3954512-3954583)
chr3 (75-128)||(3954328-3954381)
chr3 (13-54)||(8073616-8073657)
[»] chr2 (8 HSPs)
chr2 (1-76)||(29940216-29940291)
chr2 (1-76)||(34715901-34715976)
chr2 (1-76)||(34693489-34693564)
chr2 (75-127)||(34693691-34693743)
chr2 (75-127)||(34716103-34716155)
chr2 (77-128)||(40445455-40445506)
chr2 (13-54)||(29940128-29940169)
chr2 (13-54)||(40445383-40445424)
[»] chr6 (2 HSPs)
chr6 (1-76)||(19740859-19740934)
chr6 (75-128)||(19740680-19740733)


Alignment Details
Target: chr1 (Bit Score: 111; Significance: 4e-56; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 23182235 - 23182368
Alignment:
Q  1 tctttcattaatttgaatgttgaaatccctaaaatagagattcatagagatttgttgaatgttgagaacaacactgatttctgcatatt--tactgtttt 98  Q
    ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||  ||| |||||    
T  23182235 tctttaattaatttgaatgttgaaatccctaaaatagagattgatagagatttgttgaatgttgagaacaacactgatttctgcatatttataccgtttt 23182334  T
Q  99 gggagtttttgttaaaattattcaaatttctgtg 132  Q
    ||||||||||||||||||||||||||||||||||    
T  23182335 gggagtttttgttaaaattattcaaatttctgtg 23182368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 4977630 - 4977555
Alignment:
Q  1 tctttcattaatttgaatgttgaaatccctaaaatagagattcatagagatttgttgaatgttgagaacaacactg 76  Q
    ||||||||||||||||||||||||||  |||||||||||||| |||||||||||||||||||||| ||||||||||    
T  4977630 tctttcattaatttgaatgttgaaattgctaaaatagagattgatagagatttgttgaatgttgaaaacaacactg 4977555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 50880897 - 50880972
Alignment:
Q  1 tctttcattaatttgaatgttgaaatccctaaaatagagattcatagagatttgttgaatgttgagaacaacactg 76  Q
    ||||||||||||||||||||||||||  |||||||||||||| |||| ||||||||||||||||| ||||||||||    
T  50880897 tctttcattaatttgaatgttgaaattgctaaaatagagattgatagtgatttgttgaatgttgaaaacaacactg 50880972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 75 - 128
Target Start/End: Complemental strand, 4977370 - 4977317
Alignment:
Q  75 tgatttctgcatatttactgttttgggagtttttgttaaaattattcaaatttc 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4977370 tgatttctgcatatttactgttttgggagtttttgttaaaattattcaaatttc 4977317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 5316108 - 5316183
Alignment:
Q  1 tctttcattaatttgaatgttgaaatccctaaaatagagattcatagagatttgttgaatgttgagaacaacactg 76  Q
    ||||||||||||||||||||||||||  |||||||||||||| ||| | |||||||||||||||| ||||||||||    
T  5316108 tctttcattaatttgaatgttgaaattgctaaaatagagattgatataaatttgttgaatgttgaaaacaacactg 5316183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 21741620 - 21741545
Alignment:
Q  1 tctttcattaatttgaatgttgaaatccctaaaatagagattcatagagatttgttgaatgttgagaacaacactg 76  Q
    ||||||||||||||||||||||||||  |||||||| ||||| ||| | |||||||||||||||| ||||||||||    
T  21741620 tctttcattaatttgaatgttgaaattgctaaaataaagattgataaaaatttgttgaatgttgaaaacaacactg 21741545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 75 - 127
Target Start/End: Original strand, 5316300 - 5316352
Alignment:
Q  75 tgatttctgcatatttactgttttgggagtttttgttaaaattattcaaattt 127  Q
    |||||||||||||||||| ||||||||||||||||||||||||||| ||||||    
T  5316300 tgatttctgcatatttacagttttgggagtttttgttaaaattatttaaattt 5316352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 13 - 76
Target Start/End: Original strand, 50881019 - 50881082
Alignment:
Q  13 ttgaatgttgaaatccctaaaatagagattcatagagatttgttgaatgttgagaacaacactg 76  Q
    ||||||||||||||  |||||||||||||| |||| ||||||||||||||||| ||||||||||    
T  50881019 ttgaatgttgaaattgctaaaatagagattgatagtgatttgttgaatgttgaaaacaacactg 50881082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 75 - 128
Target Start/End: Complemental strand, 21741418 - 21741365
Alignment:
Q  75 tgatttctgcatatttactgttttgggagtttttgttaaaattattcaaatttc 128  Q
    ||||||||||||||||||||| |||  |||||||||||||||||||||||||||    
T  21741418 tgatttctgcatatttactgtattgaaagtttttgttaaaattattcaaatttc 21741365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 77 - 128
Target Start/End: Original strand, 50881211 - 50881262
Alignment:
Q  77 atttctgcatatttactgttttgggagtttttgttaaaattattcaaatttc 128  Q
    |||||| |||||||||| ||||| ||||||||||||||||||||||||||||    
T  50881211 atttctacatatttactattttgagagtttttgttaaaattattcaaatttc 50881262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 54
Target Start/End: Complemental strand, 4977440 - 4977399
Alignment:
Q  13 ttgaatgttgaaatccctaaaatagagattcatagagatttg 54  Q
    ||||||||||||||  |||||||||||||| |||||||||||    
T  4977440 ttgaatgttgaaattgctaaaatagagattgatagagatttg 4977399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 54
Target Start/End: Original strand, 5316230 - 5316271
Alignment:
Q  13 ttgaatgttgaaatccctaaaatagagattcatagagatttg 54  Q
    ||||||||||||||  |||||||||||||| |||||||||||    
T  5316230 ttgaatgttgaaattgctaaaatagagattgatagagatttg 5316271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 105; Significance: 1e-52; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 45472615 - 45472753
Alignment:
Q  1 tctttcattaatttgaatgttgaaatccctaaaatagagattcatagagatttgttgaatgttga-------gaacaacactgatttctgcatatttact 93  Q
    ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||       ||||||||||||||||||||||||||||    
T  45472615 tctttcattaatttgaatgttgaaatctctaaaatagagattgatagagatttgttgaatgttgagatttgagaacaacactgatttctgcatatttact 45472714  T
Q  94 gttttgggagtttttgttaaaattattcaaatttctgtg 132  Q
    |||||||||||||||||||||||||||||||||||||||    
T  45472715 gttttgggagtttttgttaaaattattcaaatttctgtg 45472753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 41878518 - 41878590
Alignment:
Q  1 tctttcattaatttgaatgttgaaatccctaaaatagagattcatagagatttgttgaatgttgagaacaaca 73  Q
    ||||||||||||||||||||||||||   ||||||||||||| |||||||||||||||||||||| |||||||    
T  41878518 tctttcattaatttgaatgttgaaattgttaaaatagagattgatagagatttgttgaatgttgaaaacaaca 41878590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 75 - 128
Target Start/End: Original strand, 41878720 - 41878773
Alignment:
Q  75 tgatttctgcatatttactgttttgggagtttttgttaaaattattcaaatttc 128  Q
    ||||||||||||||||| |||||||||| |||||||||||||||||||||||||    
T  41878720 tgatttctgcatatttattgttttgggaatttttgttaaaattattcaaatttc 41878773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 23285617 - 23285542
Alignment:
Q  1 tctttcattaatttgaatgttgaaatccctaaaatagagattcatagagatttgttgaatgttgagaacaacactg 76  Q
    ||||||||||||||||||||||||||  |||||||||||||| |||||||||||||||||||||| ||||||||||    
T  23285617 tctttcattaatttgaatgttgaaattgctaaaatagagattgatagagatttgttgaatgttgaaaacaacactg 23285542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 27078542 - 27078617
Alignment:
Q  1 tctttcattaatttgaatgttgaaatccctaaaatagagattcatagagatttgttgaatgttgagaacaacactg 76  Q
    ||||||||||||||||||||||||||  |||||||||||||| |||||||||||||||||||||| ||||||||||    
T  27078542 tctttcattaatttgaatgttgaaattgctaaaatagagattgatagagatttgttgaatgttgaaaacaacactg 27078617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 22987176 - 22987101
Alignment:
Q  1 tctttcattaatttgaatgttgaaatccctaaaatagagattcatagagatttgttgaatgttgagaacaacactg 76  Q
    ||||||||||||||||||||||||||  |||||||||||||| |||||||||||| ||||||||| ||||||||||    
T  22987176 tctttcattaatttgaatgttgaaattgctaaaatagagattgatagagatttgtagaatgttgaaaacaacactg 22987101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 75 - 127
Target Start/End: Complemental strand, 23285421 - 23285369
Alignment:
Q  75 tgatttctgcatatttactgttttgggagtttttgttaaaattattcaaattt 127  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23285421 tgatttctgcatatttactgttttgggagtttttgttaaaattattcaaattt 23285369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 75 - 128
Target Start/End: Original strand, 27078734 - 27078787
Alignment:
Q  75 tgatttctgcatatttactgttttgggagtttttgttaaaattattcaaatttc 128  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  27078734 tgatttctgcatatttactgttttgggagttttttttaaaattattcaaatttc 27078787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 75 - 128
Target Start/End: Original strand, 30853820 - 30853873
Alignment:
Q  75 tgatttctgcatatttactgttttgggagtttttgttaaaattattcaaatttc 128  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  30853820 tgatttatgcatatttactgttttgggagtttttgttaaaattattcaaatttc 30853873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 16592546 - 16592486
Alignment:
Q  1 tctttcattaatttgaatgttgaaatccctaaaatagagattcatagagatttgttgaatg 61  Q
    ||||||||||||||||||||||||||  |||||||||||||| ||||||||||||||||||    
T  16592546 tctttcattaatttgaatgttgaaattgctaaaatagagattgatagagatttgttgaatg 16592486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 30853619 - 30853693
Alignment:
Q  1 tctttcattaatttgaatgttgaaatccctaaaatagagattcatagagatttgttgaatgttgagaacaacactg 76  Q
    ||||| ||||||||||||||||||||  ||||| |||||||| |||||||||||||||||||||| ||||||||||    
T  30853619 tctttaattaatttgaatgttgaaattgctaaa-tagagattgatagagatttgttgaatgttgaaaacaacactg 30853693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 75 - 118
Target Start/End: Complemental strand, 22986975 - 22986932
Alignment:
Q  75 tgatttctgcatatttactgttttgggagtttttgttaaaatta 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  22986975 tgatttctgcatatttactgttttgggagtttttgttaaaatta 22986932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 54
Target Start/End: Complemental strand, 23285491 - 23285450
Alignment:
Q  13 ttgaatgttgaaatccctaaaatagagattcatagagatttg 54  Q
    ||||||||||||||  |||||||||||||| |||||||||||    
T  23285491 ttgaatgttgaaattgctaaaatagagattgatagagatttg 23285450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 23510545 - 23510470
Alignment:
Q  1 tctttcattaatttgaatgttgaaatccctaaaatagagattcatagagatttgttgaatgttgagaacaacactg 76  Q
    ||||||||||||||||||||||||||  |||||||||||||| |||||||||||||||||||||| ||||||||||    
T  23510545 tctttcattaatttgaatgttgaaatttctaaaatagagattgatagagatttgttgaatgttgaaaacaacactg 23510470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 9579184 - 9579110
Alignment:
Q  1 tctttcattaatttgaatgttgaaatccctaaaatagagattcatagagatttgttgaatgttgagaacaacact 75  Q
    ||||||||||||||||||||||||||  |||||||||||||| |||||||||||||||||||||| |||||||||    
T  9579184 tctttcattaatttgaatgttgaaattactaaaatagagattgatagagatttgttgaatgttgaaaacaacact 9579110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 9584879 - 9584805
Alignment:
Q  1 tctttcattaatttgaatgttgaaatccctaaaatagagattcatagagatttgttgaatgttgagaacaacact 75  Q
    ||||||||||||||||||||||||||  |||||||||||||| |||||||||||||||||||||| |||||||||    
T  9584879 tctttcattaatttgaatgttgaaattactaaaatagagattgatagagatttgttgaatgttgaaaacaacact 9584805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 48208799 - 48208873
Alignment:
Q  1 tctttcattaatttgaatgttgaaatccctaaaatagagattcatagagatttgttgaatgttgagaacaacact 75  Q
    ||||||||||||||||||||||||||  |||||||||||||| |||||||||||||||||||||| |||||||||    
T  48208799 tctttcattaatttgaatgttgaaattgctaaaatagagattgatagagatttgttgaatgttgaaaacaacact 48208873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 54779788 - 54779860
Alignment:
Q  1 tctttcattaatttgaatgttgaaatccctaaaatagagattcatagagatttgttgaatgttgagaacaaca 73  Q
    ||||||||||||||||||||||||||  |||||||||||||| |||||||||||||||||||||| |||||||    
T  54779788 tctttcattaatttgaatgttgaaattgctaaaatagagattgatagagatttgttgaatgttgaaaacaaca 54779860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 10978456 - 10978531
Alignment:
Q  1 tctttcattaatttgaatgttgaaatccctaaaatagagattcatagagatttgttgaatgttgagaacaacactg 76  Q
    ||||||||||||||||||||||||||  |||||||||||||| |||||||||| ||||||||||| ||||||||||    
T  10978456 tctttcattaatttgaatgttgaaattgctaaaatagagattgatagagattttttgaatgttgaaaacaacactg 10978531  T

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Target: chr4; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 35780241 - 35780166
Alignment:
Q  1 tctttcattaatttgaatgttgaaatccctaaaatagagattcatagagatttgttgaatgttgagaacaacactg 76  Q
    |||||||||| |||||||||||||||  |||||||||||||| |||||||||||||||||||||| ||||||||||    
T  35780241 tctttcattagtttgaatgttgaaattgctaaaatagagattgatagagatttgttgaatgttgaaaacaacactg 35780166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 75 - 128
Target Start/End: Original strand, 47128527 - 47128580
Alignment:
Q  75 tgatttctgcatatttactgttttgggagtttttgttaaaattattcaaatttc 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47128527 tgatttctgcatatttactgttttgggagtttttgttaaaattattcaaatttc 47128580  T

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Target: chr4; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 75 - 128
Target Start/End: Original strand, 54779970 - 54780023
Alignment:
Q  75 tgatttctgcatatttactgttttgggagtttttgttaaaattattcaaatttc 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54779970 tgatttctgcatatttactgttttgggagtttttgttaaaattattcaaatttc 54780023  T

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Target: chr4; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 34769266 - 34769191
Alignment:
Q  1 tctttcattaatttgaatgttgaaatccctaaaatagagattcatagagatttgttgaatgttgagaacaacactg 76  Q
    ||||||||||||||||||||||||||  |||||||||||||| ||||| |||||||||||||||| |||| |||||    
T  34769266 tctttcattaatttgaatgttgaaattgctaaaatagagattgatagaaatttgttgaatgttgaaaacagcactg 34769191  T

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Target: chr4; HSP #11
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 47128335 - 47128410
Alignment:
Q  1 tctttcattaatttgaatgttgaaatccctaaaatagagattcatagagatttgttgaatgttgagaacaacactg 76  Q
    ||||||||||||||||||||||||||    |||||||||||| |||||||||||||||||||||| ||||||||||    
T  47128335 tctttcattaatttgaatgttgaaattgtgaaaatagagattgatagagatttgttgaatgttgaaaacaacactg 47128410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 75 - 128
Target Start/End: Complemental strand, 10431118 - 10431065
Alignment:
Q  75 tgatttctgcatatttactgttttgggagtttttgttaaaattattcaaatttc 128  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  10431118 tgatttatgcatatttactgttttgggagtttttgttaaaattattcaaatttc 10431065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 75 - 128
Target Start/End: Complemental strand, 23510344 - 23510291
Alignment:
Q  75 tgatttctgcatatttactgttttgggagtttttgttaaaattattcaaatttc 128  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  23510344 tgatttctgcatatttactgttttcggagtttttgttaaaattattcaaatttc 23510291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 75 - 132
Target Start/End: Complemental strand, 34769064 - 34769007
Alignment:
Q  75 tgatttctgcatatttactgttttgggagtttttgttaaaattattcaaatttctgtg 132  Q
    ||||||| ||||||||||| ||||||||||||||| ||||||||||||||||| ||||    
T  34769064 tgatttcagcatatttactattttgggagtttttgctaaaattattcaaatttatgtg 34769007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 75 - 128
Target Start/End: Complemental strand, 35780039 - 35779987
Alignment:
Q  75 tgatttctgcatatttactgttttgggagtttttgttaaaattattcaaatttc 128  Q
    |||||| ||||||||||||||||| |||| ||||||||||||||||||||||||    
T  35780039 tgatttatgcatatttactgttttaggag-ttttgttaaaattattcaaatttc 35779987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 54
Target Start/End: Original strand, 47128457 - 47128498
Alignment:
Q  13 ttgaatgttgaaatccctaaaatagagattcatagagatttg 54  Q
    ||||||||||||||  |||||||||||||| |||||||||||    
T  47128457 ttgaatgttgaaattgctaaaatagagattgatagagatttg 47128498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 8073779 - 8073704
Alignment:
Q  1 tctttcattaatttgaatgttgaaatccctaaaatagagattcatagagatttgttgaatgttgagaacaacactg 76  Q
    ||||||||||||||||||||||||||  |||||||||||||| |||||||||||||||||||||| ||||||||||    
T  8073779 tctttcattaatttgaatgttgaaattgctaaaatagagattgatagagatttgttgaatgttgaaaacaacactg 8073704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 3954583 - 3954512
Alignment:
Q  1 tctttcattaatttgaatgttgaaatccctaaaatagagattcatagagatttgttgaatgttgagaacaac 72  Q
    ||||||||||||||||||||||||||   ||||||||||||| |||||||||||||||||||||| ||||||    
T  3954583 tctttcattaatttgaatgttgaaattgttaaaatagagattgatagagatttgttgaatgttgaaaacaac 3954512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 75 - 128
Target Start/End: Complemental strand, 3954381 - 3954328
Alignment:
Q  75 tgatttctgcatatttactgttttgggagtttttgttaaaattattcaaatttc 128  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  3954381 tgatttctgaatatttactgttttgggagtttttgttaaaattattcaaatttc 3954328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 54
Target Start/End: Complemental strand, 8073657 - 8073616
Alignment:
Q  13 ttgaatgttgaaatccctaaaatagagattcatagagatttg 54  Q
    ||||||||||||||  |||||||||||||| |||||||||||    
T  8073657 ttgaatgttgaaattgctaaaatagagattgatagagatttg 8073616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 29940291 - 29940216
Alignment:
Q  1 tctttcattaatttgaatgttgaaatccctaaaatagagattcatagagatttgttgaatgttgagaacaacactg 76  Q
    ||||||||||||||||||||||||||  |||||||||||||| |||||||||||||||||||||| ||||||||||    
T  29940291 tctttcattaatttgaatgttgaaattgctaaaatagagattgatagagatttgttgaatgttgaaaacaacactg 29940216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 34715901 - 34715976
Alignment:
Q  1 tctttcattaatttgaatgttgaaatccctaaaatagagattcatagagatttgttgaatgttgagaacaacactg 76  Q
    ||||||||||||||||||||||||||  |||||||||||||| |||||||||||||||||||||| ||||||||||    
T  34715901 tctttcattaatttgaatgttgaaattgctaaaatagagattgatagagatttgttgaatgttgaaaacaacactg 34715976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 34693489 - 34693564
Alignment:
Q  1 tctttcattaatttgaatgttgaaatccctaaaatagagattcatagagatttgttgaatgttgagaacaacactg 76  Q
    ||||||||||||||||||||||||||  |||||||||||||| |||||||||| ||||||||||| ||||||||||    
T  34693489 tctttcattaatttgaatgttgaaattgctaaaatagagattgatagagatttattgaatgttgaaaacaacactg 34693564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 75 - 127
Target Start/End: Original strand, 34693691 - 34693743
Alignment:
Q  75 tgatttctgcatatttactgttttgggagtttttgttaaaattattcaaattt 127  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34693691 tgatttctgcatatttactgttttgggagtttttgttaaaattattcaaattt 34693743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 75 - 127
Target Start/End: Original strand, 34716103 - 34716155
Alignment:
Q  75 tgatttctgcatatttactgttttgggagtttttgttaaaattattcaaattt 127  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34716103 tgatttctgcatatttactgttttgggagtttttgttaaaattattcaaattt 34716155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 77 - 128
Target Start/End: Original strand, 40445455 - 40445506
Alignment:
Q  77 atttctgcatatttactgttttgggagtttttgttaaaattattcaaatttc 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40445455 atttctgcatatttactgttttgggagtttttgttaaaattattcaaatttc 40445506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 54
Target Start/End: Complemental strand, 29940169 - 29940128
Alignment:
Q  13 ttgaatgttgaaatccctaaaatagagattcatagagatttg 54  Q
    ||||||||||||||  |||||||||||||| |||||||||||    
T  29940169 ttgaatgttgaaattgctaaaatagagattgatagagatttg 29940128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 54
Target Start/End: Original strand, 40445383 - 40445424
Alignment:
Q  13 ttgaatgttgaaatccctaaaatagagattcatagagatttg 54  Q
    ||||||||||||||  |||||||||||||| |||||||||||    
T  40445383 ttgaatgttgaaattgctaaaatagagattgatagagatttg 40445424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 19740934 - 19740859
Alignment:
Q  1 tctttcattaatttgaatgttgaaatccctaaaatagagattcatagagatttgttgaatgttgagaacaacactg 76  Q
    ||||||||||||||||||||||||||   ||||||||||||  |||||||||||||||||||||| ||||||||||    
T  19740934 tctttcattaatttgaatgttgaaattgttaaaatagagatagatagagatttgttgaatgttgaaaacaacactg 19740859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 75 - 128
Target Start/End: Complemental strand, 19740733 - 19740680
Alignment:
Q  75 tgatttctgcatatttactgttttgggagtttttgttaaaattattcaaatttc 128  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  19740733 tgatttctgcatatttactgttttgggagtttttgttaaaattaatcaaatttc 19740680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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