View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1345_high_23 (Length: 590)
Name: NF1345_high_23
Description: NF1345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1345_high_23 |
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Alignment Details
Target: chr7 (Bit Score: 245; Significance: 1e-135; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 142 - 402
Target Start/End: Original strand, 4709249 - 4709509
Alignment:
| Q |
142 |
tgtgttttggcggtgttaacatttcactgggtgaccttatctacttcgaatgtatttgattgttttaatttttgggttaactatacctacgactaatact |
241 |
Q |
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| T |
4709249 |
tgtgttttggcggtgttaacatttcactgggcgaccttatatacttcaaatgtatttgattgttttaatttttgggttaactatacctacgactaatact |
4709348 |
T |
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| Q |
242 |
tttctccataggtatagcttttctatacctacgatttaaaatccgtcactataaacctccgttggcatatgccattttcttgcagtagtaattggacaaa |
341 |
Q |
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| T |
4709349 |
tttctccataggtatagcttttctatacctactatttaaaatccgtcactataaacctccgttggcatatgccattttcttgcagtagtaattggacaaa |
4709448 |
T |
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| Q |
342 |
catatataatcaacatcaattgcttgaaagacaaatgcgttactcatcgaagtggagatgg |
402 |
Q |
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| T |
4709449 |
catatataatcaacatcaattgcttgaaagacaaatgcgttactcatcgaagtggagatgg |
4709509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 485 - 561
Target Start/End: Original strand, 4709593 - 4709669
Alignment:
| Q |
485 |
aatattgacttgtttctttaaagttgtcccgtctnnnnnnnncaatcaacctaatctctccccaaaaatagaccatc |
561 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
4709593 |
aatattgacttgtttctttaaagttgtcccgtctaaaaaaaacaatcaacctaatctctccccaaaaatagaccatc |
4709669 |
T |
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