View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1345_high_232 (Length: 250)
Name: NF1345_high_232
Description: NF1345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1345_high_232 |
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Alignment Details
Target: chr8 (Bit Score: 165; Significance: 2e-88; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 2041144 - 2040925
Alignment:
| Q |
1 |
ctataacagatcaattgtggaaaatgttctttgagaagcagtttggtataaattgcactaatgaagtagttaagaagatgaaagaaaaaagagtttcatt |
100 |
Q |
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||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2041144 |
ctataacagatcaattgtggagaaagttctttgagaagcagtttggtataaattgcactaatgaagtagttaagaagatgaaagaaaaaagagtttcatt |
2041045 |
T |
|
| Q |
101 |
cacttggttgcagctgtatgaggctaaggtnnnnnnnnntggctcaggttgagaatgaagcagttgatcgacttgcgcaatgctacaaggaagaagatgc |
200 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |||||| ||||||||||||||||||| |
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| T |
2041044 |
cacttggttgcagctgtatgaggctaaggt-caaaagagtggctcagactgagaatgaagcagttgatcgactcgcgcaacgctacaaggaagaagatgc |
2040946 |
T |
|
| Q |
201 |
aagaaaacaaagcaggaaaat |
221 |
Q |
| |
|
||||||||||||||||||||| |
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| T |
2040945 |
aagaaaacaaagcaggaaaat |
2040925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 1357634 - 1357853
Alignment:
| Q |
1 |
ctataacagatcaattgtggaaaatgttctttgagaagcagtttggtataaattgcactaatgaagtagttaagaagatgaaagaaaaaagagtttcatt |
100 |
Q |
| |
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||||||||||| |||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1357634 |
ctataacagataaattgtggaaaaagttctttgaaaagcaatttggtataaattgcactaatgaagtagttaagaagatgaaagaaaaaagagtttcatt |
1357733 |
T |
|
| Q |
101 |
cacttggttgcagctgtatgaggctaaggtnnnnnnnnntggctcaggttgagaatgaagcagttgatcgacttgcgcaatgctacaaggaagaagatgc |
200 |
Q |
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|||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |||||| ||||||||||||||||||| |
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| T |
1357734 |
cacttggttgcagctgtatgaggctaaggt-caaaaaagtggctcagactgagaatgaagcagttgatcgactcgcgcaacgctacaaggaagaagatgc |
1357832 |
T |
|
| Q |
201 |
aagaaaacaaagcaggaaaat |
221 |
Q |
| |
|
|||||||||||||||| |||| |
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| T |
1357833 |
aagaaaacaaagcaggcaaat |
1357853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 1364464 - 1364670
Alignment:
| Q |
1 |
ctataacagatcaattgtggaaaatgttctttgagaagcagtttggtataaattgcactaatgaagtagttaagaagatgaaagaaaaaagagtttcatt |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1364464 |
ctataacagatcaattgtggaaaaagttctttgagaagcaatttggtataaattgcactaatgaagtagttaagaagatgaaagaaa------------- |
1364550 |
T |
|
| Q |
101 |
cacttggttgcagctgtatgaggctaaggtnnnnnnnnntggctcaggttgagaatgaagcagttgatcgacttgcgcaatgctacaaggaagaagatgc |
200 |
Q |
| |
|
||||||||||||| ||||||||||||| || |||||| || |||||||||||||||||||||||| ||||| ||||||||||||||||||| |
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| T |
1364551 |
cacttggttgcagttgtatgaggctaaagt-caaaaaaatggctcgggctgagaatgaagcagttgatcgactcacgcaacgctacaaggaagaagatgc |
1364649 |
T |
|
| Q |
201 |
aagaaaacaaagcaggaaaat |
221 |
Q |
| |
|
|||||||||||||||| |||| |
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| T |
1364650 |
aagaaaacaaagcaggcaaat |
1364670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 1352513 - 1352719
Alignment:
| Q |
1 |
ctataacagatcaattgtggaaaatgttctttgagaagcagtttggtataaattgcactaatgaagtagttaagaagatgaaagaaaaaagagtttcatt |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1352513 |
ctataacagatcaattgtggaaaaagttctttgagaagcaatttggtataaattgcactaatgaagtagttaagaagatgaaagaaa------------- |
1352599 |
T |
|
| Q |
101 |
cacttggttgcagctgtatgaggctaaggtnnnnnnnnntggctcaggttgagaatgaagcagttgatcgacttgcgcaatgctacaaggaagaagatgc |
200 |
Q |
| |
|
||||||||||||| ||||||||||||| || |||||| || |||||||||||||||||||||||| || || ||||||||||||||||||| |
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| T |
1352600 |
cacttggttgcagttgtatgaggctaaagt-caaaaaaatggctcgggctgagaatgaagcagttgatcgactcacgaaacgctacaaggaagaagatgc |
1352698 |
T |
|
| Q |
201 |
aagaaaacaaagcaggaaaat |
221 |
Q |
| |
|
|||||||||||||||| |||| |
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|
| T |
1352699 |
aagaaaacaaagcaggcaaat |
1352719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 36717546 - 36717765
Alignment:
| Q |
1 |
ctataacagatcaattgtggaaaatgttctttgagaagcagtttggtataaattgcactaatgaagtagttaagaagatgaaagaaaaaagagtttcatt |
100 |
Q |
| |
|
||||||| ||| |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36717546 |
ctataactgataaattgtggaaaaaattctttgaaaagcagtttggtataaattgcactaatgaagtagttaagaagatgaaagaaaaaagagtttcatt |
36717645 |
T |
|
| Q |
101 |
cacttggttgcagctgtatgaggctaaggtnnnnnnnnntggctcaggttgagaatgaagcagttgatcgacttgcgcaatgctacaaggaagaagatgc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |||||| ||||||||||||||||||| |
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| T |
36717646 |
cacttggttgcagctgtatgaggctaaggt-aaaaaaaatggctcaggctgagaatgaagcagttgatcgactcgcgcaacgctacaaggaagaagatgc |
36717744 |
T |
|
| Q |
201 |
aagaaaacaaagcaggaaaat |
221 |
Q |
| |
|
||||||||||||||||||||| |
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| T |
36717745 |
aagaaaacaaagcaggaaaat |
36717765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 64; Significance: 4e-28; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 4 - 123
Target Start/End: Complemental strand, 18180007 - 18179888
Alignment:
| Q |
4 |
taacagatcaattgtggaaaatgttctttgagaagcagtttggtataaattgcactaatgaagtagttaagaagatgaaagaaaaaagagtttcattcac |
103 |
Q |
| |
|
|||||||| |||||||||||| ||||||||| |||||||||||||||| |||||| |||||| || ||| || ||||| |||||||||||| ||||||| |
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| T |
18180007 |
taacagataaattgtggaaaaagttctttgaaaagcagtttggtataagttgcacaaatgaaataattaggaggatgacagaaaaaagagtgtcattcag |
18179908 |
T |
|
| Q |
104 |
ttggttgcagctgtatgagg |
123 |
Q |
| |
|
||||||||| ||||||||| |
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| T |
18179907 |
atggttgcagttgtatgagg |
18179888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 142 - 221
Target Start/End: Complemental strand, 24619936 - 24619857
Alignment:
| Q |
142 |
gctcaggttgagaatgaagcagttgatcgacttgcgcaatgctacaaggaagaagatgcaagaaaacaaagcaggaaaat |
221 |
Q |
| |
|
||||||||| | ||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
24619936 |
gctcaggttaaaaatgaagcagttgatcgacccacgcaatgctaaaaggaagaagatgcaagaaaacaaagcaggaaaat |
24619857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 16 - 111
Target Start/End: Complemental strand, 24620432 - 24620337
Alignment:
| Q |
16 |
tgtggaaaatgttctttgagaagcagtttggtataaattgcactaatgaagtagttaagaagatgaaagaaaaaagagtttcattcacttggttgc |
111 |
Q |
| |
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||||||||| ||| |||| |||||||||||||||| |||||| ||||||||||||||| | ||||||||||||| |||||||||||| ||||||| |
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| T |
24620432 |
tgtggaaaaagtttattgaaaagcagtttggtataatttgcacaaatgaagtagttaaggatatgaaagaaaaaatagtttcattcacatggttgc |
24620337 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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