View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1345_high_233 (Length: 250)
Name: NF1345_high_233
Description: NF1345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1345_high_233 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 21 - 250
Target Start/End: Original strand, 30847601 - 30847830
Alignment:
| Q |
21 |
attgtgtgtgcatgtgaaaggagtctaatttatatacctctttttccatctcataaaatgtattgcatagaatccaatcagctttgtcaatattagagaa |
120 |
Q |
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| T |
30847601 |
attgtgtgtgcatgtgaaaggagtctaatttatatacctctttttccatctcataaaatgtattgcatagaatccaatcagctttgtcaatattagagaa |
30847700 |
T |
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| Q |
121 |
ttgacccaccaacaaatcaagcaaaacttgattctctccttttgttgagaagaatgaaggcatgtccccaagttcaattctaggcaacaaaggaagtgaa |
220 |
Q |
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| T |
30847701 |
ttgacccaccaacaaatcaagcaaaacttgattctctccttttgttgagaagaatgaaggcatgtccccaagttcaattctaggcaacaaaggaagtgaa |
30847800 |
T |
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| Q |
221 |
atctcatcttccataagaggaactttcaat |
250 |
Q |
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| T |
30847801 |
atctcatcttccataagaggaactttcaat |
30847830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 44 - 250
Target Start/End: Original strand, 30841233 - 30841439
Alignment:
| Q |
44 |
tctaatttatatacctctttttccatctcataaaatgtattgcatagaatccaatcagctttgtcaatattagagaattgacccaccaacaaatcaagca |
143 |
Q |
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| T |
30841233 |
tctaatttttatacctctttttccaactcataaaatgtattgcatagaacccaatcagctttgtcaatattagagaattgacccaccaacaaatcaagca |
30841332 |
T |
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| Q |
144 |
aaacttgattctctccttttgttgagaagaatgaaggcatgtccccaagttcaattctaggcaacaaaggaagtgaaatctcatcttccataagaggaac |
243 |
Q |
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| T |
30841333 |
aaactggattctctccttttgttgagaagaatgaagacatgtcccccaaatccaatctaggcaacaaaggaagtgaaatcacatcttcaataaggggaac |
30841432 |
T |
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| Q |
244 |
tttcaat |
250 |
Q |
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| T |
30841433 |
tttcaat |
30841439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 123
Target Start/End: Original strand, 30818185 - 30818226
Alignment:
| Q |
82 |
attgcatagaatccaatcagctttgtcaatattagagaattg |
123 |
Q |
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| T |
30818185 |
attgcaaaggatccaatcagctttgtgaatattagagaattg |
30818226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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