View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1345_high_240 (Length: 245)
Name: NF1345_high_240
Description: NF1345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1345_high_240 |
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Alignment Details
Target: chr5 (Bit Score: 121; Significance: 4e-62; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 19 - 237
Target Start/End: Original strand, 14102644 - 14102859
Alignment:
| Q |
19 |
tattgagatgtgcctaataacatacgtggaatttaaaatcaaaaatactaaacaaattaatgtgaactttttatgatgttaaggatgagatatgttatgt |
118 |
Q |
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| T |
14102644 |
tattgagatgtgcctaataacatacgtggaatttaaaatcaaa--tactaaacaaattaatgtgagctttttatgatgttaaggatgagatgtgttatgt |
14102741 |
T |
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| Q |
119 |
cnnnnnnnnnnnnnnnnnnnnngagactgagatctgctagtactctgacatattatgttgttaattgtcattatttaaatcttgatagcaatcgctcttg |
218 |
Q |
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| T |
14102742 |
caaaaaaaaaaaaaaagaga--gagactgagatctgctagtactctgacatattatgttgttaattgtcattatttaaatcttgatagcaatcgctcttg |
14102839 |
T |
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| Q |
219 |
atcatagatt-gtctctgct |
237 |
Q |
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| T |
14102840 |
atcattgattcgtctctgct |
14102859 |
T |
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