View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1345_high_243 (Length: 243)
Name: NF1345_high_243
Description: NF1345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1345_high_243 |
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Alignment Details
Target: chr7 (Bit Score: 97; Significance: 9e-48; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 72 - 179
Target Start/End: Original strand, 9972368 - 9972476
Alignment:
| Q |
72 |
gatttcatgtccaacatcttgacacatgtacacatcatagacatggattggttatgtactttttcctt-aaaaacattgttacgcactttaatgtcattt |
170 |
Q |
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| T |
9972368 |
gatttcatgtccaacatcttgacacatgtgcacatcatagacatggattggttatgtactttttccttaaaaaacattgttacgcactttaatgtcattt |
9972467 |
T |
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| Q |
171 |
taaatttac |
179 |
Q |
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| T |
9972468 |
taaatttac |
9972476 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 46
Target Start/End: Original strand, 9972303 - 9972336
Alignment:
| Q |
13 |
gcaaatatgataaattttgtttatacctcttgct |
46 |
Q |
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| T |
9972303 |
gcaaatatgatacattttgtttatacctcttgct |
9972336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 222
Target Start/End: Original strand, 9972460 - 9972488
Alignment:
| Q |
194 |
tgtcattttaaatttacaaaagctaaact |
222 |
Q |
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| T |
9972460 |
tgtcattttaaatttacaaaagctaaact |
9972488 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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