View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1345_high_251 (Length: 233)

Name: NF1345_high_251
Description: NF1345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1345_high_251
NF1345_high_251
[»] chr8 (2 HSPs)
chr8 (1-215)||(41311174-41311388)
chr8 (2-211)||(43164853-43165062)
[»] chr7 (6 HSPs)
chr7 (3-146)||(30165608-30165751)
chr7 (3-201)||(30125130-30125328)
chr7 (1-97)||(30131082-30131178)
chr7 (1-72)||(28181009-28181080)
chr7 (2-93)||(30120083-30120174)
chr7 (165-210)||(28180514-28180559)
[»] chr2 (2 HSPs)
chr2 (126-210)||(21430161-21430244)
chr2 (2-205)||(21426470-21426673)
[»] scaffold1051 (1 HSPs)
scaffold1051 (127-195)||(1971-2039)


Alignment Details
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 41311174 - 41311388
Alignment:
Q  1 atttcctttaaatcaaaggcaataataacatccatttcagtcttatcatcataaatcagccaatgaatagaaccattcaagaacgacccaactctgggac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  41311174 atttcctttaaatcaaaggcaataataacatccatttcagtcttatcatcataaaccagccaatgaatagaaccattcaagaacgacccaactctgggac 41311273  T
Q  101 caccattagagcttgcagtattcttataaggcaaatcagaatcaaactcaatttgttcccattgattacctctcaatgagaacatctccaagtcaattga 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  41311274 caccattagagcttgcagtattcttataaggcaaatcagaatcaaactcaatttgttcccattgattacctctcaatgagaaaatctccaagtcaattga 41311373  T
Q  201 actagataccatgta 215  Q
    |||||||||||||||    
T  41311374 actagataccatgta 41311388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 2 - 211
Target Start/End: Original strand, 43164853 - 43165062
Alignment:
Q  2 tttcctttaaatcaaaggcaataataacatccatttcagtcttatcatcataaatcagccaatgaatagaaccattcaagaacgacccaactctgggacc 101  Q
    |||||||||||||| |||||||||||||||| |||||||||| || || ||||| ||||||||||||||||||||||||||||||||| ||||||||| |    
T  43164853 tttcctttaaatcataggcaataataacatctatttcagtctcataattataaaccagccaatgaatagaaccattcaagaacgacccgactctgggagc 43164952  T
Q  102 accattagagcttgcagtattcttataaggcaaatcagaatcaaactcaatttgttcccattgattacctctcaatgagaacatctccaagtcaattgaa 201  Q
    ||| | ||  ||| ||||||||  |||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||| |||    
T  43164953 accttcaggtctttcagtattccaataaggcaaatcagaatcaaactcaatttgttcccattcattagctctcaatgagaaaatctccaagtcaatcgaa 43165052  T
Q  202 ctagatacca 211  Q
    ||||||||||    
T  43165053 ctagatacca 43165062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 96; Significance: 3e-47; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 3 - 146
Target Start/End: Complemental strand, 30165751 - 30165608
Alignment:
Q  3 ttcctttaaatcaaaggcaataataacatccatttcagtcttatcatcataaatcagccaatgaatagaaccattcaagaacgacccaactctgggacca 102  Q
    ||||||||||||||||||||||||||||||||||||||||| || || ||||| ||||||||||||||||||||| ||||||||||||||||||||||||    
T  30165751 ttcctttaaatcaaaggcaataataacatccatttcagtctgataattataaaccagccaatgaatagaaccattgaagaacgacccaactctgggacca 30165652  T
Q  103 ccattagagcttgcagtattcttataaggcaaatcagaatcaaa 146  Q
    || | ||||| |||||  ||| |||||||||||| |||||||||    
T  30165651 ccttcagagcatgcagggttcctataaggcaaatgagaatcaaa 30165608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 3 - 201
Target Start/End: Original strand, 30125130 - 30125328
Alignment:
Q  3 ttcctttaaatcaaaggcaataataacatccatttcagtcttatcatcataaatcagccaatgaatagaaccattcaagaacgacccaactctgggacca 102  Q
    |||||||||||||||||||| |||||||||| | |  |||| || || || || ||||||||||||||  |||||||||||| ||||||||||||| |      
T  30125130 ttcctttaaatcaaaggcaacaataacatccttgttggtctcatgattatgaaccagccaatgaatagtcccattcaagaacaacccaactctgggccat 30125229  T
Q  103 ccattagagcttgcagtattcttataaggcaaatcagaatcaaactcaatttgttcccattgattacctctcaatgagaacatctccaagtcaattgaa 201  Q
    || |||||||  ||||||||| |||||||||||| |||||||||||||||||  ||||| | |||| ||||||||| ||| ||||||||||||||||||    
T  30125230 ccgttagagcgagcagtattcctataaggcaaatgagaatcaaactcaatttcctcccacttattagctctcaatgggaaaatctccaagtcaattgaa 30125328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 30131082 - 30131178
Alignment:
Q  1 atttcctttaaatcaaaggcaataataacatccatttcagtcttatcatcataaatcagccaatgaatagaaccattcaagaacgacccaactctgg 97  Q
    ||||||||||||| |||||| |||||||||||| ||   |||| || || ||||| ||||||||||||||  |||||||||||| |||| |||||||    
T  30131082 atttcctttaaattaaaggctataataacatcccttcttgtctcataattataaaccagccaatgaatagccccattcaagaacaacccgactctgg 30131178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 28181009 - 28181080
Alignment:
Q  1 atttcctttaaatcaaaggcaataataacatccatttcagtcttatcatcataaatcagccaatgaatagaa 72  Q
    |||||||||||||||||||||||||||||| | ||||  |||| || || ||||| ||||||||||||||||    
T  28181009 atttcctttaaatcaaaggcaataataacaccaattttggtctcataattataaaccagccaatgaatagaa 28181080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 2 - 93
Target Start/End: Original strand, 30120083 - 30120174
Alignment:
Q  2 tttcctttaaatcaaaggcaataataacatccatttcagtcttatcatcataaatcagccaatgaatagaaccattcaagaacgacccaact 93  Q
    |||||||||||||||||||||||||||||| ||| |  |||| || || || || || |||||||||||  |||||||||||| ||||||||    
T  30120083 tttcctttaaatcaaaggcaataataacattcatgttggtctcatgattatgaaccacccaatgaatagccccattcaagaacaacccaact 30120174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 210
Target Start/End: Original strand, 28180514 - 28180559
Alignment:
Q  165 attacctctcaatgagaacatctccaagtcaattgaactagatacc 210  Q
    |||| ||||||||||||| ||||| || ||||||||||||||||||    
T  28180514 attagctctcaatgagaaaatctctaattcaattgaactagatacc 28180559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 126 - 210
Target Start/End: Complemental strand, 21430244 - 21430161
Alignment:
Q  126 ataaggcaaatcagaatcaaactcaatttgttcccattgattacctctcaatgagaacatctccaagtcaattgaactagatacc 210  Q
    ||||||||||| |||| ||| |||||||| |||| |||||||| ||||||||||||| ||||| |||||||||||||||||||||    
T  21430244 ataaggcaaatgagaagcaacctcaattttttcc-attgattagctctcaatgagaaaatctctaagtcaattgaactagatacc 21430161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 2 - 205
Target Start/End: Complemental strand, 21426673 - 21426470
Alignment:
Q  2 tttcctttaaatcaaaggcaataataacatccatttcagtcttatcatcataaatcagccaatgaatagaaccattcaagaacgacccaactctgggacc 101  Q
    ||||||||||||||| ||||||||||||||||   |  |||| |  || || || ||||||||||||||  ||||| ||||||||||| |||||||| |     
T  21426673 tttcctttaaatcaagggcaataataacatcccggttggtctcagaattatgaaccagccaatgaatagccccatttaagaacgacccgactctgggccg 21426574  T
Q  102 accattagagcttgcagtattcttataaggcaaatcagaatcaaactcaatttgttcccattgattacctctcaatgagaacatctccaagtcaattgaa 201  Q
    |   | | ||    ||||| |  |||||||||||| |||| ||| ||||||||||| ||||| || | ||||||||||||| |||| |||||||||||||    
T  21426573 aaattcatagacatcagtaatgatataaggcaaatgagaagcaacctcaatttgtttccatttatgagctctcaatgagaaaatcttcaagtcaattgaa 21426474  T
Q  202 ctag 205  Q
    ||||    
T  21426473 ctag 21426470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1051 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold1051
Description:

Target: scaffold1051; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 127 - 195
Target Start/End: Original strand, 1971 - 2039
Alignment:
Q  127 taaggcaaatcagaatcaaactcaatttgttcccattgattacctctcaatgagaacatctccaagtca 195  Q
    |||||||||  |||| ||||||||||||||| ||| | |||| ||||||||||||| ||||||||||||    
T  1971 taaggcaaaggagaaccaaactcaatttgtttccacttattagctctcaatgagaaaatctccaagtca 2039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University