View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1345_high_256 (Length: 228)
Name: NF1345_high_256
Description: NF1345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1345_high_256 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 7 - 228
Target Start/End: Complemental strand, 30848050 - 30847829
Alignment:
| Q |
7 |
acaaagcctatttggatacgttttggcaagtaggaccaaaaactcttgctcaacttattgaaaaatttggtactttaggtaacaaagttgattgtgttat |
106 |
Q |
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| T |
30848050 |
acaaagcctatttggatacgttttggcaagtaggaccaaaaactcttgctcaacttattgaaaaatttggtactttaggtaacaaagttgattgtgttat |
30847951 |
T |
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| Q |
107 |
ttataattcattttttccttgggctcttgatgttgctaagagatttggaattgttggtgtttcttatctcactcaaaatatgtcagtgaatagtatttac |
206 |
Q |
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| T |
30847950 |
ttataattcattttttccttgggctcttgatgttgctaagagatttggaattgttggtgtttcttatctcactcaaaatatgttggtgaatagtatttac |
30847851 |
T |
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| Q |
207 |
tatcatgttcaccaaggaacat |
228 |
Q |
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|||||||||||||||||||||| |
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| T |
30847850 |
tatcatgttcaccaaggaacat |
30847829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 7 - 217
Target Start/End: Complemental strand, 30841659 - 30841449
Alignment:
| Q |
7 |
acaaagcctatttggatacgttttggcaagtaggaccaaaaactcttgctcaacttattgaaaaatttggtactttaggtaacaaagttgattgtgttat |
106 |
Q |
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||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
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| T |
30841659 |
acaaagcctatttgggtaggttttggcaagtaggaccaaaaactcttgctcaacttattgaaaaatttggttctttaggtgacaaagttgattgtgttat |
30841560 |
T |
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| Q |
107 |
ttataattcattttttccttgggctcttgatgttgctaagagatttggaattgttggtgtttcttatctcactcaaaatatgtcagtgaatagtatttac |
206 |
Q |
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| T |
30841559 |
ttatgattcattttttccttgggctcttgatgttgctaagagatttggaattgttggtgttacttatctcactcaaaatatgtcagtgaatagtatttac |
30841460 |
T |
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| Q |
207 |
tatcatgttca |
217 |
Q |
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| T |
30841459 |
tatcatgttca |
30841449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 94 - 216
Target Start/End: Complemental strand, 30856285 - 30856163
Alignment:
| Q |
94 |
ttgattgtgttatttataattcattttttccttgggctcttgatgttgctaagagatttggaattgttggtgtttcttatctcactcaaaatatgtcagt |
193 |
Q |
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||||||||||||||||| || |||| ||||||||| |||||||||||||||||||| |||||||| |||| || |||| |||||||||||| | || |
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| T |
30856285 |
ttgattgtgttatttatgatgcattctttccttggactcttgatgttgctaagagacttggaatttttggggtatctttcctcactcaaaatgttagtgt |
30856186 |
T |
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| Q |
194 |
gaatagtatttactatcatgttc |
216 |
Q |
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| T |
30856185 |
taatagtatttactaccatgttc |
30856163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 93 - 217
Target Start/End: Complemental strand, 30860496 - 30860372
Alignment:
| Q |
93 |
gttgattgtgttatttataattcattttttccttgg-gctcttgatgttgctaagagatttggaattgttggtgtttcttatctcactcaaaatatgtca |
191 |
Q |
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||||||||| |||||||| ||||||| | |||||| ||| | |||||||| |||| ||||||||||||||||| ||||| ||| ||||||||| | | |
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| T |
30860496 |
gttgattgtcttatttatgattcattcatgccttggtgct-tagatgttgcaaagaaatttggaattgttggtgcttcttttctaactcaaaatcttgct |
30860398 |
T |
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| Q |
192 |
gtgaatagtatttactatcatgttca |
217 |
Q |
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|||||||||| |||||||||||||| |
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| T |
30860397 |
atgaatagtatatactatcatgttca |
30860372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 167
Target Start/End: Complemental strand, 13673266 - 13673196
Alignment:
| Q |
97 |
attgtgttatttataattcattttttccttgggctcttgatgttgctaagagatttggaattgttggtgtt |
167 |
Q |
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| T |
13673266 |
attgtgttatctttgatgcatttatgccttgggctcttgatgttgccaagagttttggactagttggtgtt |
13673196 |
T |
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