View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1345_high_34 (Length: 556)

Name: NF1345_high_34
Description: NF1345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1345_high_34
NF1345_high_34
[»] chr5 (2 HSPs)
chr5 (101-394)||(35425556-35425847)
chr5 (462-544)||(35425406-35425488)
[»] chr1 (3 HSPs)
chr1 (101-394)||(46710965-46711254)
chr1 (462-554)||(46710805-46710897)
chr1 (122-159)||(16481129-16481166)
[»] chr6 (1 HSPs)
chr6 (105-384)||(24138144-24138420)
[»] chr7 (3 HSPs)
chr7 (31-102)||(29208500-29208570)
chr7 (123-165)||(31292939-31292981)
chr7 (123-159)||(286310-286346)
[»] chr4 (1 HSPs)
chr4 (157-271)||(30064819-30064928)
[»] chr8 (1 HSPs)
chr8 (123-165)||(26103622-26103664)
[»] scaffold0018 (1 HSPs)
scaffold0018 (123-159)||(38084-38120)


Alignment Details
Target: chr5 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 101 - 394
Target Start/End: Complemental strand, 35425847 - 35425556
Alignment:
Q  101 cagaggcggagccagcatacat--aggggatgcagctgaaccccctcatctctttaatttacacctacaatcctatcttttatctatcttgaatcccctc 198  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  35425847 cagaggcggagccagcatacattcaggggatgcagctgaaccccctcatctctttaatttacacctacaatcctatcttttatctattttgaatcccctc 35425748  T
Q  199 aaatatatagcttgcaccatgcactgacaccactgacccaaagctagcttgtctctctcacctcatattatatagttttcaatgttaacctgctccttat 298  Q
    |||||||||||||||||||||||||||||||||||||||||||||    ||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  35425747 aaatatatagcttgcaccatgcactgacaccactgacccaaagct----tgtttctctcacctcatattatatagttttcaatgttaacctgctccttat 35425652  T
Q  299 aacaactaagttaaagcatgtgtctgctatgtaaatataattacagctctatgaatgtgtcaaattcggactttgaccaacatgaggattgagtag 394  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  35425651 aacaactaagttaaagcatgtgtctgctatgtaaatataattacagctctatgaatgtatcaaattcggactttgaccaacatgaggattgagtag 35425556  T

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Target: chr5; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 462 - 544
Target Start/End: Complemental strand, 35425488 - 35425406
Alignment:
Q  462 atccagcacatgaggtatttaagaaaaataaataccagtcttccgatcaaacaaactcaaccaataatattgtgttaaatatt 544  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35425488 atccagcacatgaggtatttaagaaaaataaataccagtcttccgatcaaacaaactcaaccaataatattgtgttaaatatt 35425406  T

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Target: chr1 (Bit Score: 254; Significance: 1e-141; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 101 - 394
Target Start/End: Complemental strand, 46711254 - 46710965
Alignment:
Q  101 cagaggcggagccagcatacat--aggggatgcagctgaaccccctcatctctttaatttacacctacaatcctatcttttatctatcttgaatcccctc 198  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46711254 cagaggcggagccagcatacatccaggggatgcagctgaaccccctcatctctttaatttacacctacaatcctatcttttatctatcttgaatcccctc 46711155  T
Q  199 aaatatatagcttgcaccatgcactgacaccactgacccaaagctagcttgtctctctcacctcatattatatagttttcaatgttaacctgctccttat 298  Q
    |||||||||||||||||||||||||||||||||||||||| ||||      | |||||||||||||||||||||||||||||||||||||||||||||||    
T  46711154 aaatatatagcttgcaccatgcactgacaccactgacccagagct------tgtctctcacctcatattatatagttttcaatgttaacctgctccttat 46711061  T
Q  299 aacaactaagttaaagcatgtgtctgctatgtaaatataattacagctctatgaatgtgtcaaattcggactttgaccaacatgaggattgagtag 394  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46711060 aacaactaagttaaagcatgtgtctgctatgtaaatataattacagctctatgaatgtgtcaaattcggactttgaccaacatgaggattgagtag 46710965  T

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Target: chr1; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 462 - 554
Target Start/End: Complemental strand, 46710897 - 46710805
Alignment:
Q  462 atccagcacatgaggtatttaagaaaaataaataccagtcttccgatcaaacaaactcaaccaataatattgtgttaaatattcttcgacatc 554  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||    
T  46710897 atccagcacatgaggtatttaagaaaaataaataccagtcttccgatcaaacaaactcaaccaataatattgtgttaaatattttttgacatc 46710805  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 122 - 159
Target Start/End: Complemental strand, 16481166 - 16481129
Alignment:
Q  122 taggggatgcagctgaaccccctcatctctttaattta 159  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  16481166 taggggatgcagctgaaccccctcatccctttaattta 16481129  T

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Target: chr6 (Bit Score: 103; Significance: 5e-51; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 105 - 384
Target Start/End: Complemental strand, 24138420 - 24138144
Alignment:
Q  105 ggcggagccagcatacat--aggggatgcagctgaaccccctcatctctttaatttacacctacaatcctatcttttatctatcttgaatcccctcaaat 202  Q
    ||||||||||||||||||  |||||||||||||||||||||||| || |||||||||||||||| ||||||| ||||||||||||||||||||||||| |    
T  24138420 ggcggagccagcatacatccaggggatgcagctgaaccccctcaactttttaatttacacctactatcctatattttatctatcttgaatcccctcaagt 24138321  T
Q  203 atatagcttgcaccatgcactgacaccactgacccaaagctagcttgtctctctcacctcatattata-tagttttcaatgttaacctgctccttataac 301  Q
     |||| |  ||||||||||||| |||||||  |||||    ||||||||||||||||||||||||||| |||||||||||| || | ||| || |||| |    
T  24138320 gtatatccagcaccatgcactg-caccactagcccaa----agcttgtctctctcacctcatattatattagttttcaatgctagcatgcaccctatacc 24138226  T
Q  302 aactaagttaaagcatgtgtctgctatgtaaatataattacagctctatgaatgtgtcaaattcggactttgaccaacatgag 384  Q
     ||| | |||||| |||||| || |||  |||| ||  || |||| ||||||||||||| ||| |||||| ||||||||||||    
T  24138225 cactta-ttaaagtatgtgtatgatatacaaatgtacgtatagctgtatgaatgtgtcagatttggacttggaccaacatgag 24138144  T

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Target: chr7 (Bit Score: 64; Significance: 1e-27; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 31 - 102
Target Start/End: Original strand, 29208500 - 29208570
Alignment:
Q  31 aaaattctatatagtaaattttgttgaaatttagtgtattttatgctgcaagccggtgtaaaccccccacca 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  29208500 aaaattctatatagtaaattttgttgaaatttagtgtattttatgctgcaagccggtgt-aaccccccacca 29208570  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 123 - 165
Target Start/End: Original strand, 31292939 - 31292981
Alignment:
Q  123 aggggatgcagctgaaccccctcatctctttaatttacaccta 165  Q
    |||||||||||||||||||||||| | ||||||||||| ||||    
T  31292939 aggggatgcagctgaaccccctcaaccctttaatttactccta 31292981  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 123 - 159
Target Start/End: Complemental strand, 286346 - 286310
Alignment:
Q  123 aggggatgcagctgaaccccctcatctctttaattta 159  Q
    |||||||||||||||||||||||| | ||||||||||    
T  286346 aggggatgcagctgaaccccctcacccctttaattta 286310  T

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Target: chr4 (Bit Score: 54; Significance: 9e-22; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 157 - 271
Target Start/End: Original strand, 30064819 - 30064928
Alignment:
Q  157 ttacacctacaatcctatcttttatctatcttgaatcccctcaaatatatagcttgcaccatgcactgacaccactgacccaaagctagcttgtctctct 256  Q
    |||||||||  ||||||| ||||||||||||||||||||||||||| |||| | |||||||| ||||| |||||||  |||||    |||||||||||||    
T  30064819 ttacacctattatcctatgttttatctatcttgaatcccctcaaatgtatatcctgcaccatacactg-caccactagcccaa----agcttgtctctct 30064913  T
Q  257 cacctcatattatat 271  Q
    |||||||||||||||    
T  30064914 cacctcatattatat 30064928  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 123 - 165
Target Start/End: Original strand, 26103622 - 26103664
Alignment:
Q  123 aggggatgcagctgaaccccctcatctctttaatttacaccta 165  Q
    |||||||||||||||||||||||| | ||||||||||| ||||    
T  26103622 aggggatgcagctgaaccccctcaaccctttaatttactccta 26103664  T

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Target: scaffold0018 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 123 - 159
Target Start/End: Original strand, 38084 - 38120
Alignment:
Q  123 aggggatgcagctgaaccccctcatctctttaattta 159  Q
    |||||||||||||||||||||||| | ||||||||||    
T  38084 aggggatgcagctgaaccccctcacccctttaattta 38120  T

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