View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1345_high_35 (Length: 545)

Name: NF1345_high_35
Description: NF1345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1345_high_35
NF1345_high_35
[»] chr7 (1 HSPs)
chr7 (95-534)||(449766-450197)
[»] chr3 (13 HSPs)
chr3 (356-523)||(9329877-9330041)
chr3 (369-509)||(9395314-9395454)
chr3 (433-523)||(9336581-9336671)
chr3 (447-510)||(9695615-9695678)
chr3 (448-523)||(41980895-41980970)
chr3 (448-523)||(41985669-41985744)
chr3 (446-494)||(9756450-9756498)
chr3 (448-487)||(9485969-9486008)
chr3 (448-487)||(13864281-13864320)
chr3 (448-523)||(9343886-9343961)
chr3 (448-494)||(9686753-9686799)
chr3 (440-505)||(16011695-16011760)
chr3 (447-495)||(9613916-9613964)
[»] chr6 (7 HSPs)
chr6 (440-523)||(7025797-7025880)
chr6 (447-523)||(7012861-7012937)
chr6 (439-523)||(7041537-7041621)
chr6 (440-523)||(7029854-7029937)
chr6 (448-523)||(7046880-7046955)
chr6 (439-523)||(9170858-9170942)
chr6 (439-523)||(9159486-9159570)
[»] chr5 (1 HSPs)
chr5 (445-512)||(18571163-18571230)
[»] chr8 (1 HSPs)
chr8 (448-505)||(13170684-13170741)


Alignment Details
Target: chr7 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 95 - 534
Target Start/End: Original strand, 449766 - 450197
Alignment:
Q  95 ccgtactgactgtaagtttggtgttgccttgtgtcaggaggaacaaccttttgtaatcgtcacaactgagaaaaatcgaaagcctgttatgttccgttgc 194  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  449766 ccgtactgactgtaagtttggtgttgcctcgtgtcaggaggaacaaccttttgtaatcgtcacaactgagaaaaatcaaaagcctgttatgttccgttgc 449865  T
Q  195 ggggacgaccatttgacgacgatccccaacatgccaaccccttgtaaagtcatgaactgtgcttttaaaggaaggccttgtgtggtagacagtaccaatc 294  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  449866 ggggacgaccatttgacgacgatccccaacatgtcaaccccttgtaaagtcatgaactgtgcttttaaaggaaggccttgtgtggtagacagtaccaatc 449965  T
Q  295 ggactgtgatgattggaccagacatgagcattcatttgatggctcaggctgacccgtggtatggtgggagaagaaaattcttggtggcgagtagtgagtt 394  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  449966 agactgtgatgattggaccagacatgagcattcatttgatggctcaggctgacccgtggtatggtgggagaagaaaattcttggtggcgagtagtgagtt 450065  T
Q  395 ccagttgttgctagtgatttgctatacaaacggtgaccgtgttactgtatggattgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttg 494  Q
    |||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  450066 ccagttgttgctagtgatttgctatacaaacggtg--------actgtatggattgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttg 450157  T
Q  495 acgaatttaggagatacaattttgttcttaggcgatctgt 534  Q
    | ||||||||||||||||||||||||||||||||||||||    
T  450158 aggaatttaggagatacaattttgttcttaggcgatctgt 450197  T

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Target: chr3 (Bit Score: 66; Significance: 6e-29; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 356 - 523
Target Start/End: Complemental strand, 9330041 - 9329877
Alignment:
Q  356 tggtgggagaagaaaattcttggtggcgagtagtgagttccagttgttgctagtgatttgctatacaaacggtgaccgtgttactgtatggattgatgtg 455  Q
    |||||||| ||| ||||||||||| | ||||||||||||  |||||||||| |||  | | |||  |||   | | |||||| |||||||||||||||||    
T  9330041 tggtgggaaaagtaaattcttggtcgagagtagtgagtttgagttgttgctggtggatagatatgaaaa---ttatcgtgttcctgtatggattgatgtg 9329945  T
Q  456 tttaggcttgatgagaaggagaaaaagtgggtcaagttgacgaatttaggagatacaattttgttctt 523  Q
    ||||||||||||||||| ||||||| ||||||||||||| |||||||||||||||   ||||||||||    
T  9329944 tttaggcttgatgagaaagagaaaaggtgggtcaagttggcgaatttaggagataaggttttgttctt 9329877  T

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Target: chr3; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 369 - 509
Target Start/End: Complemental strand, 9395454 - 9395314
Alignment:
Q  369 aaattcttggtggcgagtagtgagttccagttgttgctagtgatttgctatacaaacggtgaccgtgttactgtatggattgatgtgtttaggcttgatg 468  Q
    ||||||||||| | || |||||| || |||||||||||||||  |   |||| ||| | ||| ||||||| |||| ||||||||||||||||||||||||    
T  9395454 aaattcttggtcgagactagtgactttcagttgttgctagtggatatatataaaaatgatgatcgtgttattgtaaggattgatgtgtttaggcttgatg 9395355  T
Q  469 agaaggagaaaaagtgggtcaagttgacgaatttaggagat 509  Q
    ||||| ||||||||||||| |||||||| ||||||||||||    
T  9395354 agaagcagaaaaagtgggtgaagttgactaatttaggagat 9395314  T

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Target: chr3; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 433 - 523
Target Start/End: Complemental strand, 9336671 - 9336581
Alignment:
Q  433 gtgttactgtatggattgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttgacgaatttaggagatacaattttgttctt 523  Q
    ||||| |||||||||||||||||||||||||||||||||| ||||||| |||||||||| ||||||||||||||||||   ||||||||||    
T  9336671 gtgttcctgtatggattgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttctt 9336581  T

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Target: chr3; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 447 - 510
Target Start/End: Original strand, 9695615 - 9695678
Alignment:
Q  447 attgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttgacgaatttaggagata 510  Q
    |||||||| || |||||||||||||||||||| ||||||||||||||||| |||||||| ||||    
T  9695615 attgatgtattcaggcttgatgagaaggagaagaagtgggtcaagttgaccaatttaggggata 9695678  T

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Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 448 - 523
Target Start/End: Complemental strand, 41980970 - 41980895
Alignment:
Q  448 ttgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttgacgaatttaggagatacaattttgttctt 523  Q
    |||||||||||||||||| | |||| ||||| || |||||||||||||||| |||||| |||| | ||||||||||    
T  41980970 ttgatgtgtttaggcttgctaagaaagagaagaaatgggtcaagttgacgagtttaggggatagagttttgttctt 41980895  T

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Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 448 - 523
Target Start/End: Complemental strand, 41985744 - 41985669
Alignment:
Q  448 ttgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttgacgaatttaggagatacaattttgttctt 523  Q
    |||||||||| || ||||||||||||||||| || |||||||||||| ||| |||||| |||| | ||||||||||    
T  41985744 ttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttctt 41985669  T

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Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 446 - 494
Target Start/End: Complemental strand, 9756498 - 9756450
Alignment:
Q  446 gattgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttg 494  Q
    ||||||||||| ||||||||||||||| ||||||| |||||||||||||    
T  9756498 gattgatgtgtataggcttgatgagaaagagaaaaggtgggtcaagttg 9756450  T

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Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 448 - 487
Target Start/End: Original strand, 9485969 - 9486008
Alignment:
Q  448 ttgatgtgtttaggcttgatgagaaggagaaaaagtgggt 487  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  9485969 ttgatgtgtttaggcttgatgagaaggagaagaagtgggt 9486008  T

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Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 448 - 487
Target Start/End: Complemental strand, 13864320 - 13864281
Alignment:
Q  448 ttgatgtgtttaggcttgatgagaaggagaaaaagtgggt 487  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  13864320 ttgatgtgtttaggcttgatgagagggagaaaaagtgggt 13864281  T

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Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 448 - 523
Target Start/End: Complemental strand, 9343961 - 9343886
Alignment:
Q  448 ttgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttgacgaatttaggagatacaattttgttctt 523  Q
    |||||||||||| ||||||||||| |||||| |||||||| ||||| || | |||||| ||||   ||||||||||    
T  9343961 ttgatgtgtttaagcttgatgagatggagaagaagtgggtgaagttaacaactttaggggatagtgttttgttctt 9343886  T

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Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 448 - 494
Target Start/End: Complemental strand, 9686799 - 9686753
Alignment:
Q  448 ttgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttg 494  Q
    ||||||| || |||||||||||||| ||||| |||||||||||||||    
T  9686799 ttgatgtattcaggcttgatgagaacgagaagaagtgggtcaagttg 9686753  T

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Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 440 - 505
Target Start/End: Original strand, 16011695 - 16011760
Alignment:
Q  440 tgtatggattgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttgacgaatttagg 505  Q
    |||| |||||||||||||| |||| |||||||||||||| || ||||| || ||| | ||||||||    
T  16011695 tgtaaggattgatgtgtttgggctcgatgagaaggagaagaattgggttaaattgcctaatttagg 16011760  T

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Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 447 - 495
Target Start/End: Original strand, 9613916 - 9613964
Alignment:
Q  447 attgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttga 495  Q
    |||||| | |||| |||||||||||||||||| |||||||| |||||||    
T  9613916 attgatttttttaagcttgatgagaaggagaagaagtgggtgaagttga 9613964  T

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Target: chr6 (Bit Score: 44; Significance: 9e-16; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 440 - 523
Target Start/End: Complemental strand, 7025880 - 7025797
Alignment:
Q  440 tgtatggattgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttgacgaatttaggagatacaattttgttctt 523  Q
    |||| |||||||| |||||| |||| ||||||||||||| |||||||| |||||||||| |||||||||||   ||||||||||    
T  7025880 tgtaaggattgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttgacgagtttaggagatagggttttgttctt 7025797  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 447 - 523
Target Start/End: Complemental strand, 7012937 - 7012861
Alignment:
Q  447 attgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttgacgaatttaggagatacaattttgttctt 523  Q
    |||||| |||||| |||| ||||||||||||| |||||||| |||||||| | |||||||||||  |||||||||||    
T  7012937 attgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttgacaagtttaggagataggattttgttctt 7012861  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 439 - 523
Target Start/End: Complemental strand, 7041621 - 7041537
Alignment:
Q  439 ctgtatggattgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttgacgaatttaggagatacaattttgttctt 523  Q
    |||||||||||||| ||||||  ||| ||||||||||||| |||||||| |||||||| | |||||| ||||   ||||||||||    
T  7041621 ctgtatggattgatttgtttaaacttaatgagaaggagaagaagtgggtgaagttgactagtttaggggatagggttttgttctt 7041537  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 440 - 523
Target Start/End: Complemental strand, 7029937 - 7029854
Alignment:
Q  440 tgtatggattgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttgacgaatttaggagatacaattttgttctt 523  Q
    |||| |||||||| |||||| |||| ||||||||||||| |||||||| |||||||||| ||| || ||||   ||||||||||    
T  7029937 tgtaaggattgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttgacgagtttcggggatagggttttgttctt 7029854  T

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Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 448 - 523
Target Start/End: Complemental strand, 7046955 - 7046880
Alignment:
Q  448 ttgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttgacgaatttaggagatacaattttgttctt 523  Q
    ||||| |||||| |||| ||||||||||||| |||||||| ||||| |||| |||||| |||| | ||||||||||    
T  7046955 ttgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttaacgagtttaggggataaagttttgttctt 7046880  T

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Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 439 - 523
Target Start/End: Complemental strand, 9170942 - 9170858
Alignment:
Q  439 ctgtatggattgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttgacgaatttaggagatacaattttgttctt 523  Q
    ||||| |||||||| |||||| |||| ||||||||||||| |||||||| || || |||| |||||| ||||   ||||||||||    
T  9170942 ctgtaaggattgatttgtttaagcttaatgagaaggagaagaagtgggtgaaattaacgagtttaggggatagggttttgttctt 9170858  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 439 - 523
Target Start/End: Original strand, 9159486 - 9159570
Alignment:
Q  439 ctgtatggattgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttgacgaatttaggagatacaattttgttctt 523  Q
    ||||| |||||||| |||||| |||| | ||||||||||| |||||||| || || |||| |||||| ||||   ||||||||||    
T  9159486 ctgtaaggattgatttgtttaagcttaacgagaaggagaagaagtgggtgaaattaacgagtttaggggatagggttttgttctt 9159570  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 445 - 512
Target Start/End: Complemental strand, 18571230 - 18571163
Alignment:
Q  445 ggattgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttgacgaatttaggagataca 512  Q
    |||||||| | |||| |||||||||||||||||| |||||||| || ||||||| |||||| ||||||    
T  18571230 ggattgatttctttaagcttgatgagaaggagaagaagtgggtgaaattgacgagtttaggggataca 18571163  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 448 - 505
Target Start/End: Original strand, 13170684 - 13170741
Alignment:
Q  448 ttgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttgacgaatttagg 505  Q
    |||||||||| || |||||||| |||||||| || |||||||||||| ||| ||||||    
T  13170684 ttgatgtgttcagacttgatgaaaaggagaagaaatgggtcaagttggcgagtttagg 13170741  T

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