View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1345_high_4 (Length: 956)
Name: NF1345_high_4
Description: NF1345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1345_high_4 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 830; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 830; E-Value: 0
Query Start/End: Original strand, 8 - 930
Target Start/End: Original strand, 1346727 - 1347661
Alignment:
| Q |
8 |
caccacagaccaaacaaagattctgctaatccactcccaaactaaaaagctttgtttttaataagtcaatacgaggagctactagattttgaaaagagtt |
107 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
1346727 |
caccacaaaccaaacaaagattctgctaatccactcccaaactaaaaagctttgtttttaataagtcaatatgaggagctactagattttgaaaagagtt |
1346826 |
T |
|
| Q |
108 |
tccatgctataacaacaaagcaagtttgggaaatatgctcaaaacatatgaagcagatccaatttaacgaaaaaggttgcaaggcttaaaacaagaattt |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
1346827 |
tccatgctataacaacaaagcaagtttgggaaatatgctcaaaacatatgaagcagatccaatttaacgaaaaaggttacaaggcttaaaacaagaattt |
1346926 |
T |
|
| Q |
208 |
gagctgattgaattttgcaaaaatgaaagtattcatgattttttacgaatggatacgttggtcaatgaagcgaagaataatataacagaaaaacaagtca |
307 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1346927 |
gagctgattgaattttgcaaagatgaaagtattcatgattttttacgaatggatacgttggtcaatgaagcgaagaataatataacagaaaaacaagtca |
1347026 |
T |
|
| Q |
308 |
tgaagaaaattgtgtatacactaacgagatgaatcaattacgtcatagaagcaattcaagagtcaaaaagatcttatctcaaagaccttgaatgatatgc |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
1347027 |
tgaagaaaattgtgtatacactaacgagatgaatcaattacgtcatagaagcaattcaagagtcaaaaagatcttatctcaaagaccttgaatgatttgc |
1347126 |
T |
|
| Q |
408 |
aagcatccttggagtcacatgaaatgcgaatgaaagaaagggtcaagtgacacaatcaatcaagcacttcaagctccaacaaaactgacaaattagggat |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1347127 |
aagcatccttggagtcacatgaaatgcgaatgaaagaaagggtcaagtgacacaatcaatcaagcacttcaagctccaacaaaactgacaaattagggat |
1347226 |
T |
|
| Q |
508 |
ttgtgcaaaggaaggtagaccgcaaaactaaagagggaaaaagttcagaggtagaactaactcaagcaatggaacaagaggtaatggctctgtgcaaaat |
607 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
1347227 |
ttgtgcaaaggaaggtagaccgcaaaactaaagagggcaaaagttcagaggtagaactaactcaagcaatggaactagaggtaatggctctgtgcaaaat |
1347326 |
T |
|
| Q |
608 |
aaagcagtgtcatgaatgcaagaaatatggaca------------cagccacaaattgttctattcaaccaacgtggttacgaaaaatgctaagcaatgc |
695 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |||||||||||||||||||||||||||| || |
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|
| T |
1347327 |
aaagcagtgtcatgaatgcaagaaatatggacataatatatatatcagcaacaaattgttctattcaagcaacgtggttacgaaaaatgctaagcaaagc |
1347426 |
T |
|
| Q |
696 |
atatatcgcgtagttattaagtgcaccctagaattgttggaccattgatttgtataaggagacaaaacctatacttttcaaaccatcaaatccaatagta |
795 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1347427 |
atatatcgcgtagttattaagtgtaccctagaattgttggaccattgatttgtataaggagacaaaacctatacttttcaaaccatcaaatccaatagta |
1347526 |
T |
|
| Q |
796 |
gcaggtatagaaaattaagaaaaaaccaagtatacatctaggaaatattcatatcaccgacaacttacaaacacgagagatcctaggacaggaagataaa |
895 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1347527 |
gcaggtatagaaaattaagaaaacaccaagtatatatctaggaaatattcatatcaccaacaacttacaaacacgagagatcctaggacaggaagataaa |
1347626 |
T |
|
| Q |
896 |
tcttctaaaaattgggagccctccgttgaagctga |
930 |
Q |
| |
|
||||||||||| ||||||| ||||||||||||||| |
|
|
| T |
1347627 |
tcttctaaaaaatgggagctctccgttgaagctga |
1347661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 416 - 528
Target Start/End: Complemental strand, 8675916 - 8675805
Alignment:
| Q |
416 |
ttggagtcacatgaaatgcgaatgaaagaaagggtcaagtgacacaatcaatcaagcacttcaagctccaacaaaactgacaaattagggatttgtgcaa |
515 |
Q |
| |
|
|||||||| ||||||||| ||||| |||||| ||||||||||||||| | ||| || || |||||||||||| ||||||||| ||||||||||| || |
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|
| T |
8675916 |
ttggagtcgcatgaaatgttaatgagtgaaagg-tcaagtgacacaatcgaacaaacatttacagctccaacaaatctgacaaataagggatttgtgtaa |
8675818 |
T |
|
| Q |
516 |
aggaaggtagacc |
528 |
Q |
| |
|
||||||||||||| |
|
|
| T |
8675817 |
aggaaggtagacc |
8675805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 302 - 473
Target Start/End: Complemental strand, 19807748 - 19807579
Alignment:
| Q |
302 |
aagtcatgaagaaaattgtgtatacactaacgagatgaatcaattacgtcatagaagcaattcaagagtcaaaaagatcttatctcaaagaccttgaatg |
401 |
Q |
| |
|
|||||||| ||||||||||| |||||||| || ||| ||||||||| ||| ||||||| ||||||| ||||||||| | | || ||||| ||||| |
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|
| T |
19807748 |
aagtcatggagaaaattgtgctaacactaacaagctgattcaattacgcattagcagcaattgaagagtc-aaaagatctgaacacagcgacctagaatg |
19807650 |
T |
|
| Q |
402 |
atatgcaagcatccttggagtcacatgaaatgcgaatgaaagaaagggtcaagtgacacaatcaatcaagca |
473 |
Q |
| |
|
|| ||||| || ||||| ||||||||||||||| ||| | |||| |||||||||||||||| |||||||| |
|
|
| T |
19807649 |
atttgcaatcacccttgcagtcacatgaaatgcaaataagtgaaa-agtcaagtgacacaatcgatcaagca |
19807579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 670 - 786
Target Start/End: Complemental strand, 8675798 - 8675681
Alignment:
| Q |
670 |
tggttacgaaaaatgctaagcaatgcatatatcgcgtagttattaagtgcaccctagaattgttggacc-attgatttgtataaggagacaaaacctata |
768 |
Q |
| |
|
||||||| |||||||||||||| ||||||| || ||||||| |||||||||||||||||| |||| ||||||||||||||||||| || ||| || |
|
|
| T |
8675798 |
tggttacagaaaatgctaagcaaaacatatattgcatagttatcaagtgcaccctagaattggaagaccgtttgatttgtataaggagaccaagcctgta |
8675699 |
T |
|
| Q |
769 |
cttttcaaaccatcaaat |
786 |
Q |
| |
|
| |||||||| |||||| |
|
|
| T |
8675698 |
ttgttcaaaccgtcaaat |
8675681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 478 - 532
Target Start/End: Complemental strand, 9619623 - 9619569
Alignment:
| Q |
478 |
aagctccaacaaaactgacaaattagggatttgtgcaaaggaaggtagaccgcaa |
532 |
Q |
| |
|
|||||||| |||| ||||||||| || ||||||||||||||| |||||||||||| |
|
|
| T |
9619623 |
aagctccagcaaatctgacaaataagtgatttgtgcaaaggagggtagaccgcaa |
9619569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 53 - 158
Target Start/End: Original strand, 19652915 - 19653021
Alignment:
| Q |
53 |
aaagctttgtttttaataagtcaatacgaggagctactagattttgaaaagagtttccatgctataacaacaaagcaagtttgggaaa-tatgctcaaaa |
151 |
Q |
| |
|
||||||||||||| |||||||||||| ||| || ||| |||| |||| || | |||||||||||||||||||| || |||| ||| ||||| ||||| |
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|
| T |
19652915 |
aaagctttgttttaaataagtcaatatgagcagataccagatcttgagaaaaaattccatgctataacaacaaatgaaacttggaaaattatgcacaaaa |
19653014 |
T |
|
| Q |
152 |
catatga |
158 |
Q |
| |
|
||||||| |
|
|
| T |
19653015 |
catatga |
19653021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 112; Significance: 4e-56; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 109 - 287
Target Start/End: Complemental strand, 40036960 - 40036781
Alignment:
| Q |
109 |
ccatgctataacaacaaagcaagtttgggaaat-atgctcaaaacatatgaagcagatccaatttaacgaaaaaggttgcaaggcttaaaacaagaattt |
207 |
Q |
| |
|
|||||||||||||| ||| |||| ||||||||| |||||||||||| ||| |||| ||||||||||||||||||||||||||| |||||||||| ||||| |
|
|
| T |
40036960 |
ccatgctataacaataaaacaagcttgggaaattatgctcaaaacacatggagcaaatccaatttaacgaaaaaggttgcaagacttaaaacaacaattt |
40036861 |
T |
|
| Q |
208 |
gagctgattgaattttgcaaaaatgaaagtattcatgattttttacgaatggatacgttggtcaatgaagcgaagaataa |
287 |
Q |
| |
|
|||||||||||||||| |||| ||||||| ||||||||||||||||||||||||| |||||||||| || | |||||||| |
|
|
| T |
40036860 |
gagctgattgaattttacaaagatgaaagcattcatgattttttacgaatggatatgttggtcaataaaaccaagaataa |
40036781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 97; E-Value: 4e-47
Query Start/End: Original strand, 104 - 375
Target Start/End: Complemental strand, 40031623 - 40031340
Alignment:
| Q |
104 |
agtttccatgctata--acaacaaagcaagtttgggaaat-atgctcaaaacatatgaagcagatccaatttaacgaaaaaggttgcaaggcttaaaaca |
200 |
Q |
| |
|
||||||||||||||| | | ||||||||| ||||||||| |||||||||||| ||| |||| ||||| ||||| ||||||||||||||| ||||||||| |
|
|
| T |
40031623 |
agtttccatgctatataatagcaaagcaagcttgggaaattatgctcaaaacacatggagcaaatccagtttaaagaaaaaggttgcaagacttaaaaca |
40031524 |
T |
|
| Q |
201 |
agaatttgagctgattgaattttgcaaaaatgaaagtattcatgattttttacgaatggatacgttggtcaatgaagcgaagaa---------taatata |
291 |
Q |
| |
|
| |||||||||| |||||||||| |||| || ||| ||||| ||||||||||| ||| ||||| ||||||||| || ||||||| ||||| | |
|
|
| T |
40031523 |
acaatttgagcttattgaattttacaaagataaaaatattcctgattttttacaaatagatacattggtcaataaaccgaagaataacaatggtaataca |
40031424 |
T |
|
| Q |
292 |
acagaaaaacaagtcatgaagaaaattgtgtatacactaacgagatgaatcaattacgtcatagaagcaattcaagagtcaaaa |
375 |
Q |
| |
|
|||||||||||||||||| |||| ||| || | |||||| | |||||| ||||||||| ||||| |||| ||||||||||||| |
|
|
| T |
40031423 |
acagaaaaacaagtcatggagaagattatgcaaacactatcaagatgattcaattacgccatagcagcatctcaagagtcaaaa |
40031340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 706 - 777
Target Start/End: Complemental strand, 15785176 - 15785105
Alignment:
| Q |
706 |
tagttattaagtgcaccctagaattgttggaccattgatttgtataaggagacaaaacctatacttttcaaa |
777 |
Q |
| |
|
||||||| |||||||||||||||||| ||||||||| ||| |||||||||||| ||||||||| | |||||| |
|
|
| T |
15785176 |
tagttatcaagtgcaccctagaattggtggaccattaattggtataaggagaccaaacctatattgttcaaa |
15785105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 419 - 562
Target Start/End: Original strand, 32241112 - 32241253
Alignment:
| Q |
419 |
gagtcacatgaaatgcgaatgaaagaaagggtcaagtgacacaatcaatcaagcacttcaagctccaacaaaa-ctgacaaattagggatttgtgcaaag |
517 |
Q |
| |
|
||||||||||||||| |||||| |||||| || ||||||| |||| | ||| || || ||||||| ||||| |||||| || |||||||||||||||| |
|
|
| T |
32241112 |
gagtcacatgaaatgtgaatgagtgaaagg-tcgagtgacataatcgaccaaacatttaaagctccttcaaaatctgacagatgagggatttgtgcaaag |
32241210 |
T |
|
| Q |
518 |
gaaggtagaccgcaaaactaaagagggaaaaagttcagaggtaga |
562 |
Q |
| |
|
|| |||||||| | ||| |||||||| |||| || ||||||||| |
|
|
| T |
32241211 |
gatggtagacctc--aaccaaagagggcaaaactttagaggtaga |
32241253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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