View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1345_high_43 (Length: 514)

Name: NF1345_high_43
Description: NF1345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1345_high_43
NF1345_high_43
[»] chr4 (22 HSPs)
chr4 (267-486)||(39134997-39135227)
chr4 (77-257)||(6246784-6246965)
chr4 (86-208)||(10420966-10421086)
chr4 (149-257)||(6247410-6247519)
chr4 (149-251)||(10421521-10421623)
chr4 (149-251)||(15481510-15481612)
chr4 (151-251)||(15481041-15481141)
chr4 (151-203)||(50709713-50709765)
chr4 (151-227)||(50710359-50710435)
chr4 (151-240)||(45331395-45331484)
chr4 (154-227)||(53664242-53664315)
chr4 (189-257)||(232029-232097)
chr4 (151-203)||(53665028-53665080)
chr4 (161-203)||(13856645-13856687)
chr4 (154-243)||(30808635-30808724)
chr4 (151-243)||(30809447-30809539)
chr4 (153-228)||(34956313-34956388)
chr4 (153-243)||(6680286-6680376)
chr4 (154-228)||(34956983-34957057)
chr4 (153-215)||(50709034-50709096)
chr4 (189-258)||(231435-231503)
chr4 (151-243)||(45330579-45330671)
[»] chr1 (11 HSPs)
chr1 (77-257)||(11469081-11469262)
chr1 (86-257)||(14925221-14925390)
chr1 (149-250)||(11469705-11469806)
chr1 (149-257)||(14924674-14924782)
chr1 (149-257)||(31787478-31787586)
chr1 (149-243)||(31788216-31788310)
chr1 (153-227)||(38618260-38618334)
chr1 (151-228)||(7463444-7463521)
chr1 (151-228)||(7464012-7464089)
chr1 (151-228)||(11426882-11426959)
chr1 (151-228)||(11427449-11427526)
[»] chr8 (14 HSPs)
chr8 (84-258)||(12350525-12350703)
chr8 (149-257)||(12349967-12350075)
chr8 (149-257)||(43924958-43925066)
chr8 (149-234)||(43972026-43972111)
chr8 (151-250)||(43924497-43924596)
chr8 (154-235)||(39257656-39257737)
chr8 (149-234)||(43971301-43971386)
chr8 (151-218)||(38686342-38686409)
chr8 (154-227)||(38687000-38687073)
chr8 (151-212)||(39258391-39258452)
chr8 (151-203)||(33801553-33801605)
chr8 (151-214)||(15183790-15183853)
chr8 (154-227)||(33802318-33802391)
chr8 (191-259)||(40450968-40451036)
[»] scaffold0189 (2 HSPs)
scaffold0189 (86-257)||(12738-12907)
scaffold0189 (149-257)||(12184-12292)
[»] chr5 (7 HSPs)
chr5 (86-243)||(4555268-4555423)
chr5 (150-258)||(4554656-4554764)
chr5 (151-234)||(6804775-6804858)
chr5 (153-243)||(4789534-4789624)
chr5 (178-243)||(26712357-26712422)
chr5 (178-243)||(26982095-26982160)
chr5 (191-243)||(35262466-35262518)
[»] chr3 (9 HSPs)
chr3 (149-258)||(38337417-38337526)
chr3 (151-250)||(38336951-38337048)
chr3 (151-250)||(49287694-49287793)
chr3 (164-243)||(15450240-15450318)
chr3 (154-243)||(55124428-55124517)
chr3 (191-243)||(27452637-27452689)
chr3 (223-257)||(42108370-42108404)
chr3 (191-243)||(33968195-33968247)
chr3 (153-232)||(44022031-44022110)
[»] chr2 (16 HSPs)
chr2 (151-234)||(4976447-4976530)
chr2 (151-234)||(4994354-4994437)
chr2 (149-257)||(4975696-4975804)
chr2 (149-257)||(4993604-4993712)
chr2 (151-243)||(41519867-41519959)
chr2 (151-241)||(37545692-37545782)
chr2 (151-227)||(8536828-8536904)
chr2 (151-257)||(42369643-42369749)
chr2 (151-243)||(42370892-42370984)
chr2 (154-218)||(8536176-8536240)
chr2 (151-234)||(41768685-41768768)
chr2 (191-243)||(36390971-36391023)
chr2 (191-250)||(30545417-30545476)
chr2 (191-241)||(15602802-15602852)
chr2 (189-241)||(1271247-1271299)
chr2 (225-257)||(41985908-41985940)
[»] chr6 (1 HSPs)
chr6 (149-250)||(27763420-27763521)
[»] chr7 (7 HSPs)
chr7 (151-243)||(46757438-46757530)
chr7 (151-243)||(27599225-27599317)
chr7 (154-243)||(12732261-12732350)
chr7 (151-243)||(27600037-27600129)
chr7 (154-228)||(40905060-40905134)
chr7 (149-243)||(46759202-46759296)
chr7 (225-257)||(46756270-46756302)
[»] scaffold0071 (1 HSPs)
scaffold0071 (164-243)||(11873-11951)
[»] scaffold0041 (1 HSPs)
scaffold0041 (154-228)||(44884-44958)
[»] scaffold0119 (2 HSPs)
scaffold0119 (189-241)||(29938-29990)
scaffold0119 (189-233)||(36620-36664)


Alignment Details
Target: chr4 (Bit Score: 177; Significance: 3e-95; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 267 - 486
Target Start/End: Complemental strand, 39135227 - 39134997
Alignment:
Q  267 atatggtttcttcacatgttcaagagggtctgattggtgtgcctcatatcactcactcgaagccaaccccacataaaatgcctctca-----------ct 355  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||           |     
T  39135227 atatggtttcttcacatgttcaagagggtctgattggcgtgcctcatatcactcactcgaagccaaccccacataaaatgcctctcaagactaactaacc 39135128  T
Q  356 atccatttatagactttaaccgtcattttatgaagaacaagaagaaaaagggaatgaaattgagaataaacttcaacaatgaccactctaacttcaagac 455  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  39135127 atccatttatagactttaaccgtcattttgtgaagaacaagaagaaaaagggaatgaaattgaaaataaacttcaacaatgaccactctaacttcaagac 39135028  T
Q  456 tcacaaatcttttattccacaagctaagtct 486  Q
    |||||||||||||||||||||||||||||||    
T  39135027 tcacaaatcttttattccacaagctaagtct 39134997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 77 - 257
Target Start/End: Complemental strand, 6246965 - 6246784
Alignment:
Q  77 cagagacgagaaggagagaaagaaaagagagttgggacagctgcaagtggtgggccaatatggnnnnnnnnntc-tggtgttgagtgtctatgataaaag 175  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            || ||||||||||||||||||||||    
T  6246965 cagaaacgagaaggagagaaagaaaagagagttgggacagctgcaagtggtgggccaatatggaaaaaaaaaaaatgatgttgagtgtctatgataaaag 6246866  T
Q  176 tatgttctctaccttatctaatggtcaaaattaattttcccatagtaggaaacaacttccctttcccaaattaaacaccacc 257  Q
    |||||||||||||||||||||||||||||||||| |||||||| || |||||||| |||||||||||||||||||| |||||    
T  6246865 tatgttctctaccttatctaatggtcaaaattaactttcccatggtgggaaacaatttccctttcccaaattaaacgccacc 6246784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 86 - 208
Target Start/End: Complemental strand, 10421086 - 10420966
Alignment:
Q  86 gaaggagagaaagaaaagagagttgggacagctgcaagtggtgggccaatatggnnnnnnnnntctggtgttgagtgtctatgataaaagtatgttctct 185  Q
    ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||         ||||||||||||||||||||||||||||||||| |||    
T  10421086 gaaggagagaaagaaaagagagttggggcagctgcaagtggtgggtcaatatggaaaaaaa--tctggtgttgagtgtctatgataaaagtatgttatct 10420989  T
Q  186 accttatctaatggtcaaaatta 208  Q
    |  ||||||||||||||||||||    
T  10420988 agtttatctaatggtcaaaatta 10420966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 149 - 257
Target Start/End: Original strand, 6247410 - 6247519
Alignment:
Q  149 tctggtgttgagtgtctatgataaaa-gtatgttctctaccttatctaatggtcaaaattaattttcccatagtaggaaacaacttccctttcccaaatt 247  Q
    |||||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||||| |||||||||  |  ||||||||||||||||||||||||    
T  6247410 tctggtgttgagtgtctatgataaaaagtatgttctctactttatctaatgatcaaaattagttttcccatgatgagaaacaacttccctttcccaaatt 6247509  T
Q  248 aaacaccacc 257  Q
    |||| |||||    
T  6247510 aaacgccacc 6247519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 149 - 251
Target Start/End: Original strand, 10421521 - 10421623
Alignment:
Q  149 tctggtgttgagtgtctatgataaaagtatgttctctaccttatctaatggtcaaaattaattttcccatagtaggaaacaacttccctttcccaaatta 248  Q
    |||||||||||||||||||||||||| |||||||||||  | |||||| |||||||||||  |||||||| || | ||||||||||||||||||||||||    
T  10421521 tctggtgttgagtgtctatgataaaaatatgttctctatttaatctaacggtcaaaattagctttcccatggtggaaaacaacttccctttcccaaatta 10421620  T
Q  249 aac 251  Q
    |||    
T  10421621 aac 10421623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 149 - 251
Target Start/End: Original strand, 15481510 - 15481612
Alignment:
Q  149 tctggtgttgagtgtctatgataaaagtatgttctctaccttatctaatggtcaaaattaattttcccatagtaggaaacaacttccctttcccaaatta 248  Q
    ||||||||||||| |||||||||||| |||||||||||  | |||||  ||||||||||| ||||||||| || |||||||||||||||||| |||||||    
T  15481510 tctggtgttgagtttctatgataaaaatatgttctctatttaatctaccggtcaaaattagttttcccattgtgggaaacaacttccctttcgcaaatta 15481609  T
Q  249 aac 251  Q
    |||    
T  15481610 aac 15481612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 151 - 251
Target Start/End: Complemental strand, 15481141 - 15481041
Alignment:
Q  151 tggtgttgagtgtctatgataaaagtatgttctctaccttatctaatggtcaaaattaattttcccatagtaggaaacaacttccctttcccaaattaaa 250  Q
    |||||||||| ||||||||||||| |||||||||||  | |||||| |||||||||||  ||||||||    |||||||||||||||| |||||||||||    
T  15481141 tggtgttgagagtctatgataaaaatatgttctctatttaatctaacggtcaaaattagctttcccatgacgggaaacaacttcccttccccaaattaaa 15481042  T
Q  251 c 251  Q
    |    
T  15481041 c 15481041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 151 - 203
Target Start/End: Complemental strand, 50709765 - 50709713
Alignment:
Q  151 tggtgttgagtgtctatgataaaagtatgttctctaccttatctaatggtcaa 203  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||| |||||    
T  50709765 tggtgttgagtgtctatgataaaactatgttctctactttatctaatagtcaa 50709713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 151 - 227
Target Start/End: Original strand, 50710359 - 50710435
Alignment:
Q  151 tggtgttgagtgtctatgataaaagtatgttctctaccttatctaatggtcaaaattaattttcccatagtaggaaa 227  Q
    |||||||||||||||||||||||   ||||||||||| ||||||||||||||| ||| | |||||||| || |||||    
T  50710359 tggtgttgagtgtctatgataaattcatgttctctactttatctaatggtcaatatttactttcccatggtgggaaa 50710435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 151 - 240
Target Start/End: Original strand, 45331395 - 45331484
Alignment:
Q  151 tggtgttgagtgtctatgataaaagtatgttctctaccttatctaatggtcaaaattaattttcccatagtaggaaacaacttccctttc 240  Q
    |||||||||||||||||||||| | | |||||  ||| | |||||||||||||| |||| |||| ||| || |||||||||| |||||||    
T  45331395 tggtgttgagtgtctatgataagaatgtgttcattacttaatctaatggtcaaatttaactttctcatggtgggaaacaactcccctttc 45331484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 154 - 227
Target Start/End: Complemental strand, 53664315 - 53664242
Alignment:
Q  154 tgttgagtgtctatgataaaagtatgttctctaccttatctaatggtcaaaattaattttcccatagtaggaaa 227  Q
    |||||||||||||||||||||  ||||||||||  ||||||||||||||| ||| | |||||||| || |||||    
T  53664315 tgttgagtgtctatgataaaaccatgttctctattttatctaatggtcaatatttactttcccatggtgggaaa 53664242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 189 - 257
Target Start/End: Original strand, 232029 - 232097
Alignment:
Q  189 ttatctaatggtcaaaattaattttcccatagtaggaaacaacttccctttcccaaattaaacaccacc 257  Q
    |||||||||||| |||||| | |||||||| || ||||||||||||||||||||| | ||||| |||||    
T  232029 ttatctaatggttaaaatttactttcccatggtgggaaacaacttccctttcccatactaaaccccacc 232097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 151 - 203
Target Start/End: Original strand, 53665028 - 53665080
Alignment:
Q  151 tggtgttgagtgtctatgataaaagtatgttctctaccttatctaatggtcaa 203  Q
    ||||||||||||||||||||||||  ||||||||||| |||| ||||||||||    
T  53665028 tggtgttgagtgtctatgataaaaccatgttctctactttatttaatggtcaa 53665080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 161 - 203
Target Start/End: Complemental strand, 13856687 - 13856645
Alignment:
Q  161 tgtctatgataaaagtatgttctctaccttatctaatggtcaa 203  Q
    ||||||||||||| ||||||||||||| |||||||||||||||    
T  13856687 tgtctatgataaaggtatgttctctactttatctaatggtcaa 13856645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 154 - 243
Target Start/End: Complemental strand, 30808724 - 30808635
Alignment:
Q  154 tgttgagtgtctatgataaaagtatgttctctaccttatctaatggtcaaaattaattttcccatagtaggaaacaacttccctttccca 243  Q
    ||||||||||||||||||| | | | |||  ||| | |||||||||||||| |||| |||||||| || ||||||||||  |||||||||    
T  30808724 tgttgagtgtctatgataagaatgtattcattacttaatctaatggtcaaatttaactttcccatggtgggaaacaactctcctttccca 30808635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 151 - 243
Target Start/End: Original strand, 30809447 - 30809539
Alignment:
Q  151 tggtgttgagtgtctatgataaaagtatgttctctaccttatctaatggtcaaaattaattttcccatagtaggaaacaacttccctttccca 243  Q
    |||||||||| ||||||||||||| | |||||  ||| | ||||| |||||||| |||| |||| ||| || | |||||||| ||||||||||    
T  30809447 tggtgttgagagtctatgataaaaatgtgttcattacttaatctagtggtcaaatttaactttctcatggtggaaaacaactcccctttccca 30809539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 153 - 228
Target Start/End: Complemental strand, 34956388 - 34956313
Alignment:
Q  153 gtgttgagtgtctatgataaaagtatgttctctaccttatctaatggtcaaaattaattttcccatagtaggaaac 228  Q
    |||||||| ||||||||||||| | |||||| ||| | |||||| |||||||||||| ||||| ||| | ||||||    
T  34956388 gtgttgagagtctatgataaaaatgtgttctttacttgatctaagggtcaaaattaactttcctataatgggaaac 34956313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 153 - 243
Target Start/End: Original strand, 6680286 - 6680376
Alignment:
Q  153 gtgttgagtgtctatgataaaagtatgttctctaccttatctaatggtcaaaattaattttcccatagtaggaaacaacttccctttccca 243  Q
    ||||||||  |||||||||||| |||||||| ||| | ||||||||||||| ||| | |||||||| ||  |||||   ||||||||||||    
T  6680286 gtgttgagaatctatgataaaactatgttctttacttaatctaatggtcaatatttactttcccatggtgagaaactctttccctttccca 6680376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 154 - 228
Target Start/End: Original strand, 34956983 - 34957057
Alignment:
Q  154 tgttgagtgtctatgataaaagtatgttctctaccttatctaatggtcaaaattaattttcccatagtaggaaac 228  Q
    ||||||| ||| ||| ||||| |||||||| ||| | |||||| | |||||||||| ||| ||||||||||||||    
T  34956983 tgttgagagtccatggtaaaaatatgttctttacttgatctaaggatcaaaattaacttttccatagtaggaaac 34957057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 153 - 215
Target Start/End: Complemental strand, 50709096 - 50709034
Alignment:
Q  153 gtgttgagtgtctatgataaaagtatgttctctaccttatctaatggtcaaaattaattttcc 215  Q
    |||||||| ||||||||||||| | |||||| ||| | |||||| |||||||||||| |||||    
T  50709096 gtgttgagagtctatgataaaaatgtgttctttacttgatctaagggtcaaaattaactttcc 50709034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 189 - 258
Target Start/End: Complemental strand, 231503 - 231435
Alignment:
Q  189 ttatctaatggtcaaaattaattttcccatagtaggaaacaacttccctttcccaaattaaacaccacct 258  Q
    |||||||||||  ||||||| ||| ||||| |||| ||||||||||||||||||| | ||||| ||||||    
T  231503 ttatctaatggataaaattacttt-cccatggtagaaaacaacttccctttcccatactaaaccccacct 231435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 151 - 243
Target Start/End: Complemental strand, 45330671 - 45330579
Alignment:
Q  151 tggtgttgagtgtctatgataaaagtatgttctctaccttatctaatggtcaaaattaattttcccatagtaggaaacaacttccctttccca 243  Q
    |||||||||| ||||||||||| | | | |||  ||| | ||||| |||||||| |||| ||| |||| || |||||||||| ||||||||||    
T  45330671 tggtgttgagagtctatgataagaatgtattcattacttaatctagtggtcaaatttaacttttccatggtgggaaacaactcccctttccca 45330579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 115; Significance: 3e-58; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 77 - 257
Target Start/End: Complemental strand, 11469262 - 11469081
Alignment:
Q  77 cagagacgagaaggagagaaagaaaagagagttgggacagctgcaagtggtgggccaatatggnnnnnnnnn-tctggtgttgagtgtctatgataaaag 175  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||           |||||||||||||||||||||||||||    
T  11469262 cagaaacgagaaggagagaaagaaaagagagttgggacagctgcaagtggtgggccaatatgaaaaaaaaaaatctggtgttgagtgtctatgataaaag 11469163  T
Q  176 tatgttctctaccttatctaatggtcaaaattaattttcccatagtaggaaacaacttccctttcccaaattaaacaccacc 257  Q
    |||||||||||||||||||||||||||||||||  |||||||| || ||||||||||||||||||| ||||||||| |||||    
T  11469162 tatgttctctaccttatctaatggtcaaaattagctttcccatggtgggaaacaacttccctttcctaaattaaacgccacc 11469081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 86 - 257
Target Start/End: Original strand, 14925221 - 14925390
Alignment:
Q  86 gaaggagagaaagaaaagagagttgggacagctgcaagtggtgggccaatatggnnnnnnnnntctggtgttgagtgtctatgataaaagtatgttctct 185  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||    
T  14925221 gaaggagagaaagaaaagagagttggggcagctgcaagtggtgggccaatatggaaaaaaa--tctggtgttgagtgtctatgataaaagtatgttctct 14925318  T
Q  186 accttatctaatggtcaaaattaattttcccatagtaggaaacaacttccctttcccaaattaaacaccacc 257  Q
    |  ||||||||||||||||||||  |||||||| || ||||||||||| |||| |||||||||||| |||||    
T  14925319 agtttatctaatggtcaaaattagctttcccatggtgggaaacaactttccttccccaaattaaacgccacc 14925390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 149 - 250
Target Start/End: Original strand, 11469705 - 11469806
Alignment:
Q  149 tctggtgttgagtgtctatgataaaagtatgttctctaccttatctaatggtcaaaattaattttcccatagtaggaaacaacttccctttcccaaatta 248  Q
    ||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |||| |||| ||   ||||||||||||||||||||||||    
T  11469705 tctggtgttgaatgtctatgataaaagtatgttctctactttatctaatggtcaaaattagtttttccatggtgaaaaacaacttccctttcccaaatta 11469804  T
Q  249 aa 250  Q
    ||    
T  11469805 aa 11469806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 149 - 257
Target Start/End: Complemental strand, 14924782 - 14924674
Alignment:
Q  149 tctggtgttgagtgtctatgataaaagtatgttctctaccttatctaatggtcaaaattaattttcccatagtaggaaacaacttccctttcccaaatta 248  Q
    |||||||||||||||||||||||||| |||||||||||  | || ||| |||||||||||  |||||||| || ||||||||||||||||||||||||||    
T  14924782 tctggtgttgagtgtctatgataaaaatatgttctctatttaatttaacggtcaaaattagctttcccatggtgggaaacaacttccctttcccaaatta 14924683  T
Q  249 aacaccacc 257  Q
    |||||||||    
T  14924682 aacaccacc 14924674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 149 - 257
Target Start/End: Complemental strand, 31787586 - 31787478
Alignment:
Q  149 tctggtgttgagtgtctatgataaaagtatgttctctaccttatctaatggtcaaaattaattttcccatagtaggaaacaacttccctttcccaaatta 248  Q
    |||| |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||  ||| |||| || |||||||||||||| |||||| | ||    
T  31787586 tctgatgttgagtctctatgataaaagtatgttctctactttatctaatggtcaaaattagcttttccatggtgggaaacaacttcccattcccatacta 31787487  T
Q  249 aacaccacc 257  Q
    ||| |||||    
T  31787486 aacgccacc 31787478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 149 - 243
Target Start/End: Original strand, 31788216 - 31788310
Alignment:
Q  149 tctggtgttgagtgtctatgataaaagtatgttctctaccttatctaatggtcaaaattaattttcccatagtaggaaacaacttccctttccca 243  Q
    |||||||||||||||||||| |||||||||||||||||  |||||||||||| |||||||| |||||||| || |||||||||||| | ||||||    
T  31788216 tctggtgttgagtgtctatggtaaaagtatgttctctattttatctaatggttaaaattaactttcccatggtgggaaacaacttctcattccca 31788310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 153 - 227
Target Start/End: Complemental strand, 38618334 - 38618260
Alignment:
Q  153 gtgttgagtgtctatgataaaagtatgttctctaccttatctaatggtcaaaattaattttcccatagtaggaaa 227  Q
    |||||||| ||||||||||| | | ||||| |||| | |||||||||||||| |||| |||||||| || |||||    
T  38618334 gtgttgagagtctatgataagaatgtgttcactacttaatctaatggtcaaacttaactttcccatggtgggaaa 38618260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 228
Target Start/End: Complemental strand, 7463521 - 7463444
Alignment:
Q  151 tggtgttgagtgtctatgataaaagtatgttctctaccttatctaatggtcaaaattaattttcccatagtaggaaac 228  Q
    |||||||||  ||||||||||||| | |||||| ||  | ||||||||||||||||||  |||||||| || ||||||    
T  7463521 tggtgttgatggtctatgataaaactgtgttctttatttaatctaatggtcaaaattagctttcccatggtgggaaac 7463444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 228
Target Start/End: Original strand, 7464012 - 7464089
Alignment:
Q  151 tggtgttgagtgtctatgataaaagtatgttctctaccttatctaatggtcaaaattaattttcccatagtaggaaac 228  Q
    |||||||||  ||||||||||||  | |||||||||  | |||| ||||||||||||| ||||||||| || ||||||    
T  7464012 tggtgttgatggtctatgataaagttgtgttctctagttaatctgatggtcaaaattagttttcccatggtgggaaac 7464089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 228
Target Start/End: Complemental strand, 11426959 - 11426882
Alignment:
Q  151 tggtgttgagtgtctatgataaaagtatgttctctaccttatctaatggtcaaaattaattttcccatagtaggaaac 228  Q
    |||||||||  ||||||||||||| | |||||| ||  | ||||||||||||||||||  |||||||| || ||||||    
T  11426959 tggtgttgatggtctatgataaaactgtgttctttagttaatctaatggtcaaaattagctttcccatggtgggaaac 11426882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 228
Target Start/End: Original strand, 11427449 - 11427526
Alignment:
Q  151 tggtgttgagtgtctatgataaaagtatgttctctaccttatctaatggtcaaaattaattttcccatagtaggaaac 228  Q
    |||||||||  ||||||||||||  | |||||||||  | |||| ||||||||||||| ||||||||| |||| ||||    
T  11427449 tggtgttgatggtctatgataaagttgtgttctctagttaatctgatggtcaaaattagttttcccatggtagaaaac 11427526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 107; Significance: 2e-53; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 84 - 258
Target Start/End: Original strand, 12350525 - 12350703
Alignment:
Q  84 gagaaggagagaaagaaaagagagttgggacagctgcaagtggtgggccaatatggnnnnnnnnn----tctggtgttgagtgtctatgataaaagtatg 179  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||             |||||||||||||||||||||||||||||||    
T  12350525 gagaaggagagaaagaaaagagagttgggacagctacaagtggtgggccaatatggataaaaaaaaaaatctggtgttgagtgtctatgataaaagtatg 12350624  T
Q  180 ttctctaccttatctaatggtcaaaattaattttcccatagtaggaaacaacttccctttcccaaattaaacaccacct 258  Q
    |||||||||||||||||||||||||||||  |||||||| || |||||||| |||||||||||||||||||| ||||||    
T  12350625 ttctctaccttatctaatggtcaaaattaggtttcccatggtgggaaacaatttccctttcccaaattaaacgccacct 12350703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 149 - 257
Target Start/End: Complemental strand, 12350075 - 12349967
Alignment:
Q  149 tctggtgttgagtgtctatgataaaagtatgttctctaccttatctaatggtcaaaattaattttcccatagtaggaaacaacttccctttcccaaatta 248  Q
    ||||||||||||||||||||||||||| ||||||| ||| |||||||||||| ||||||| |||| |||| || ||||||||||||||||||||||||||    
T  12350075 tctggtgttgagtgtctatgataaaagcatgttctttactttatctaatggttaaaattagtttttccatggtgggaaacaacttccctttcccaaatta 12349976  T
Q  249 aacaccacc 257  Q
    ||| |||||    
T  12349975 aacgccacc 12349967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 149 - 257
Target Start/End: Original strand, 43924958 - 43925066
Alignment:
Q  149 tctggtgttgagtgtctatgataaaagtatgttctctaccttatctaatggtcaaaattaattttcccatagtaggaaacaacttccctttcccaaatta 248  Q
    |||||||||||||||||||||||||| |||||||||||  | |||||| |||||||||||| |||| ||| || ||||||||||||||||||||||||||    
T  43924958 tctggtgttgagtgtctatgataaaaatatgttctctatttaatctaacggtcaaaattaactttctcatggtgggaaacaacttccctttcccaaatta 43925057  T
Q  249 aacaccacc 257  Q
    ||| |||||    
T  43925058 aacgccacc 43925066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 149 - 234
Target Start/End: Original strand, 43972026 - 43972111
Alignment:
Q  149 tctggtgttgagtgtctatgataaaagtatgttctctaccttatctaatggtcaaaattaattttcccatagtaggaaacaacttc 234  Q
    |||||||||||||||||||| |||||||||||||||||  |||||||||||| |||||||| ||||||||||| ||||||||||||    
T  43972026 tctggtgttgagtgtctatggtaaaagtatgttctctattttatctaatggttaaaattaactttcccatagtgggaaacaacttc 43972111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 151 - 250
Target Start/End: Complemental strand, 43924596 - 43924497
Alignment:
Q  151 tggtgttgagtgtctatgataaaagtatgttctctaccttatctaatggtcaaaattaattttcccatagtaggaaacaacttccctttcccaaattaaa 250  Q
    ||||||||||||| |||||||||| |||||||||||  | |||||| |||||||||||  |||||||| || ||||||||||||||||||||||||||||    
T  43924596 tggtgttgagtgtttatgataaaaatatgttctctatttaatctaacggtcaaaattagctttcccatggtgggaaacaacttccctttcccaaattaaa 43924497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 154 - 235
Target Start/End: Complemental strand, 39257737 - 39257656
Alignment:
Q  154 tgttgagtgtctatgataaaagtatgttctctaccttatctaatggtcaaaattaattttcccatagtaggaaacaacttcc 235  Q
    |||||||| ||||||||||||||||||||||||| |||| |||||||||||||||  |||||||| || |||||||||||||    
T  39257737 tgttgagtctctatgataaaagtatgttctctactttatttaatggtcaaaattagctttcccatggtgggaaacaacttcc 39257656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 149 - 234
Target Start/End: Complemental strand, 43971386 - 43971301
Alignment:
Q  149 tctggtgttgagtgtctatgataaaagtatgttctctaccttatctaatggtcaaaattaattttcccatagtaggaaacaacttc 234  Q
    |||| |||||||| ||||||||||||||||||||||||| |||| |||||||||||||||  |||||||| || ||||||||||||    
T  43971386 tctgatgttgagtctctatgataaaagtatgttctctactttatttaatggtcaaaattagctttcccatggtgggaaacaacttc 43971301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 151 - 218
Target Start/End: Complemental strand, 38686409 - 38686342
Alignment:
Q  151 tggtgttgagtgtctatgataaaagtatgttctctaccttatctaatggtcaaaattaattttcccat 218  Q
    ||||||||||||||||||||||||  ||||||||||| ||||||||||||||| ||| | ||||||||    
T  38686409 tggtgttgagtgtctatgataaaaccatgttctctactttatctaatggtcaatatttactttcccat 38686342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 154 - 227
Target Start/End: Original strand, 38687000 - 38687073
Alignment:
Q  154 tgttgagtgtctatgataaaagtatgttctctaccttatctaatggtcaaaattaattttcccatagtaggaaa 227  Q
    |||||||||||||||||||||  ||||||||||| |||||||||| |||| ||| | |||||||| || |||||    
T  38687000 tgttgagtgtctatgataaaatcatgttctctactttatctaatgatcaatatttactttcccattgtgggaaa 38687073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 151 - 212
Target Start/End: Original strand, 39258391 - 39258452
Alignment:
Q  151 tggtgttgagtgtctatgataaaagtatgttctctaccttatctaatggtcaaaattaattt 212  Q
    |||||||||||||||| | |||||||||||||| ||  |||||||||||| |||||||||||    
T  39258391 tggtgttgagtgtctacggtaaaagtatgttctttagtttatctaatggttaaaattaattt 39258452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 151 - 203
Target Start/End: Complemental strand, 33801605 - 33801553
Alignment:
Q  151 tggtgttgagtgtctatgataaaagtatgttctctaccttatctaatggtcaa 203  Q
    ||||||||||||||||||||||||  ||||||||||| |||| ||||||||||    
T  33801605 tggtgttgagtgtctatgataaaaccatgttctctactttatttaatggtcaa 33801553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 151 - 214
Target Start/End: Original strand, 15183790 - 15183853
Alignment:
Q  151 tggtgttgagtgtctatgataaaagtatgttctctaccttatctaatggtcaaaattaattttc 214  Q
    |||| |||||||||| ||||||||  ||||| ||||| ||||||||||||||||||||| ||||    
T  15183790 tggttttgagtgtctgtgataaaatcatgttttctactttatctaatggtcaaaattaactttc 15183853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 154 - 227
Target Start/End: Original strand, 33802318 - 33802391
Alignment:
Q  154 tgttgagtgtctatgataaaagtatgttctctaccttatctaatggtcaaaattaattttcccatagtaggaaa 227  Q
    |||||||||||||||||||||  ||||||||||  |||| |||||||||| ||| | |||||||| || |||||    
T  33802318 tgttgagtgtctatgataaaaccatgttctctattttatttaatggtcaatatttactttcccatggtgggaaa 33802391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 191 - 259
Target Start/End: Original strand, 40450968 - 40451036
Alignment:
Q  191 atctaatggtcaaaattaattttcccatagtaggaaacaacttccctttcccaaattaaacaccacctc 259  Q
    |||||||||| |||||| | |||||||| || ||||||||||| | ||||||| | ||||| |||||||    
T  40450968 atctaatggttaaaatttactttcccatggtgggaaacaacttacatttcccatactaaaccccacctc 40451036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189 (Bit Score: 98; Significance: 5e-48; HSPs: 2)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 86 - 257
Target Start/End: Original strand, 12738 - 12907
Alignment:
Q  86 gaaggagagaaagaaaagagagttgggacagctgcaagtggtgggccaatatggnnnnnnnnntctggtgttgagtgtctatgataaaagtatgttctct 185  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||         |  ||||||||||||||||||||||||||||||||||    
T  12738 gaaggagagaaagaaaagagagttggggcagctgcaagtggtgggccaatatggaaaaaaaaat--ggtgttgagtgtctatgataaaagtatgttctct 12835  T
Q  186 accttatctaatggtcaaaattaattttcccatagtaggaaacaacttccctttcccaaattaaacaccacc 257  Q
    |  ||||||||||||||||||||| |||||||| || |||||||||||| ||| |||||||||||| |||||    
T  12836 agtttatctaatggtcaaaattaactttcccatggtgggaaacaacttcacttccccaaattaaacgccacc 12907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 149 - 257
Target Start/End: Complemental strand, 12292 - 12184
Alignment:
Q  149 tctggtgttgagtgtctatgataaaagtatgttctctaccttatctaatggtcaaaattaattttcccatagtaggaaacaacttccctttcccaaatta 248  Q
    |||| ||||||||||||||||||||| |||||||||||  | |||||| ||||||||||||||||| ||| || |||||||||||| |||||||||||||    
T  12292 tctgatgttgagtgtctatgataaaaatatgttctctatttaatctaacggtcaaaattaattttctcatggtgggaaacaacttctctttcccaaatta 12193  T
Q  249 aacaccacc 257  Q
    ||| |||||    
T  12192 aacgccacc 12184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 72; Significance: 2e-32; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 86 - 243
Target Start/End: Original strand, 4555268 - 4555423
Alignment:
Q  86 gaaggagagaaagaaaagagagttgggacagctgcaagtggtgggccaatatggnnnnnnnnntctggtgttgagtgtctatgataaaagtatgttctct 185  Q
    |||||| ||||| ||||||||||||||||||||||||| |||||||||||||||         |  ||||||||||||||| |||||||||||||||||     
T  4555268 gaaggaaagaaataaaagagagttgggacagctgcaagcggtgggccaatatggaaaaaaaatt--ggtgttgagtgtctacgataaaagtatgttctcc 4555365  T
Q  186 accttatctaatggtcaaaattaattttcccatagtaggaaacaacttccctttccca 243  Q
    || ||||| || | |||||||||  |||||||| ||||||||||||||||||||||||    
T  4555366 actttatccaacgttcaaaattagctttcccatggtaggaaacaacttccctttccca 4555423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 150 - 258
Target Start/End: Complemental strand, 4554764 - 4554656
Alignment:
Q  150 ctggtgttgagtgtctatgataaaagtatgttctctaccttatctaatggtcaaaattaattttcccatagtaggaaacaacttccctttcccaaattaa 249  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  |||| ||| || | |||||| || ||||||||| | |||    
T  4554764 ctggtgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagctttctcatggtggaaaacaattttcctttcccatactaa 4554665  T
Q  250 acaccacct 258  Q
    || ||||||    
T  4554664 accccacct 4554656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 151 - 234
Target Start/End: Original strand, 6804775 - 6804858
Alignment:
Q  151 tggtgttgagtgtctatgataaaagtatgttctctaccttatctaatggtcaaaattaattttcccatagtaggaaacaacttc 234  Q
    |||||||||| | |||||||||   | |||||| ||||| ||||||||||||||||| | |||||||| || ||||||||||||    
T  6804775 tggtgttgagagactatgataactatgtgttctttacctaatctaatggtcaaaattgactttcccatggtgggaaacaacttc 6804858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 153 - 243
Target Start/End: Complemental strand, 4789624 - 4789534
Alignment:
Q  153 gtgttgagtgtctatgataaaagtatgttctctaccttatctaatggtcaaaattaattttcccatagtaggaaacaacttccctttccca 243  Q
    |||||||| || ||| ||||||  |||||||| |  | ||||||||||||| | ||| |||||||| || |||||||||| ||||||||||    
T  4789624 gtgttgagggtttataataaaatcatgttctccatttgatctaatggtcaagaataactttcccatggtgggaaacaactcccctttccca 4789534  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 178 - 243
Target Start/End: Original strand, 26712357 - 26712422
Alignment:
Q  178 tgttctctaccttatctaatggtcaaaattaattttcccatagtaggaaacaacttccctttccca 243  Q
    |||||| ||| | |||| ||||| |||||||  |||||||| || |||||||||||||||||||||    
T  26712357 tgttctttacttgatctgatggttaaaattagctttcccatggtgggaaacaacttccctttccca 26712422  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 178 - 243
Target Start/End: Original strand, 26982095 - 26982160
Alignment:
Q  178 tgttctctaccttatctaatggtcaaaattaattttcccatagtaggaaacaacttccctttccca 243  Q
    |||||| ||| | |||| ||||| |||||||  |||||||| || |||||||||||||||||||||    
T  26982095 tgttctttacttgatctgatggttaaaattagctttcccatggtgggaaacaacttccctttccca 26982160  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 191 - 243
Target Start/End: Complemental strand, 35262518 - 35262466
Alignment:
Q  191 atctaatggtcaaaattaattttcccatagtaggaaacaacttccctttccca 243  Q
    ||||||||||||||| ||| |||||||| ||||||||||| |  |||||||||    
T  35262518 atctaatggtcaaaaataactttcccatggtaggaaacaattatcctttccca 35262466  T

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Target: chr3 (Bit Score: 70; Significance: 2e-31; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 149 - 258
Target Start/End: Original strand, 38337417 - 38337526
Alignment:
Q  149 tctggtgttgagtgtctatgataaaagtatgttctctaccttatctaatggtcaaaattaattttcccatagtaggaaacaacttccctttcccaaatta 248  Q
    |||||||||||||||||||||||||| |||||||||||  | |||||| |||||||||||  |||||||| || ||||||||||||||||||||||||||    
T  38337417 tctggtgttgagtgtctatgataaaaatatgttctctatttaatctaacggtcaaaattagctttcccatggtgggaaacaacttccctttcccaaatta 38337516  T
Q  249 aacaccacct 258  Q
    ||| ||||||    
T  38337517 aacgccacct 38337526  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 151 - 250
Target Start/End: Complemental strand, 38337048 - 38336951
Alignment:
Q  151 tggtgttgagtgtctatgataaaagtatgttctctaccttatctaatggtcaaaattaattttcccatagtaggaaacaacttccctttcccaaattaaa 250  Q
    |||||||||||||||  ||||||| |||||||||||  | |||||| |||||||||||  |||||||| || |||||||||||||||| |||||||||||    
T  38337048 tggtgttgagtgtct--gataaaaatatgttctctatttaatctaacggtcaaaattagctttcccatggtgggaaacaacttcccttccccaaattaaa 38336951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 151 - 250
Target Start/End: Complemental strand, 49287793 - 49287694
Alignment:
Q  151 tggtgttgagtgtctatgataaaagtatgttctctaccttatctaatggtcaaaattaattttcccatagtaggaaacaacttccctttcccaaattaaa 250  Q
    |||||||||| || |||||||| | |||||||| ||| | ||||||  ||  |||||||||||||||||||||||||||||||  |||||| | ||||||    
T  49287793 tggtgttgagagtgtatgataagactatgttctatacttaatctaaccgtttaaattaattttcccatagtaggaaacaactttactttcctatattaaa 49287694  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 164 - 243
Target Start/End: Complemental strand, 15450318 - 15450240
Alignment:
Q  164 ctatgataaaagtatgttctctaccttatctaatggtcaaaattaattttcccatagtaggaaacaacttccctttccca 243  Q
    ||||||||||| |||||||||||| | ||||||||||||| ||||| |||||||| || ||||||   ||||||||||||    
T  15450318 ctatgataaaaatatgttctctacttaatctaatggtcaagattaactttcccatggt-ggaaactctttccctttccca 15450240  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 154 - 243
Target Start/End: Complemental strand, 55124517 - 55124428
Alignment:
Q  154 tgttgagtgtctatgataaaagtatgttctctaccttatctaatggtcaaaattaattttcccatagtaggaaacaacttccctttccca 243  Q
    |||||||  |||||||||||| |||||||| ||| | ||||||| ||||| ||| |||||||||| || ||||||   ||||||||||||    
T  55124517 tgttgagaatctatgataaaactatgttctttacatgatctaatagtcaatatttattttcccatggtgggaaactctttccctttccca 55124428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 191 - 243
Target Start/End: Complemental strand, 27452689 - 27452637
Alignment:
Q  191 atctaatggtcaaaattaattttcccatagtaggaaacaacttccctttccca 243  Q
    |||||||||||||| |||||||| |||| ||||||||| | ||||||||||||    
T  27452689 atctaatggtcaaatttaatttttccatggtaggaaactatttccctttccca 27452637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 223 - 257
Target Start/End: Complemental strand, 42108404 - 42108370
Alignment:
Q  223 ggaaacaacttccctttcccaaattaaacaccacc 257  Q
    ||||||||||||||||||||||||||||| |||||    
T  42108404 ggaaacaacttccctttcccaaattaaacgccacc 42108370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 191 - 243
Target Start/End: Complemental strand, 33968247 - 33968195
Alignment:
Q  191 atctaatggtcaaaattaattttcccatagtaggaaacaacttccctttccca 243  Q
    |||||||||||||||   |||||||||| || |||||||| ||||||||||||    
T  33968247 atctaatggtcaaaaaatattttcccatggtgggaaacaagttccctttccca 33968195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 153 - 232
Target Start/End: Original strand, 44022031 - 44022110
Alignment:
Q  153 gtgttgagtgtctatgataaaagtatgttctctacctt-atctaatggtcaaaattaattttcccatagtaggaaacaact 232  Q
    ||||||||||| |||||||||||||||||| |||  || |||||||||||||| ||  ||||||||| || | ||||||||    
T  44022031 gtgttgagtgtgtatgataaaagtatgttc-ctagtttaatctaatggtcaaatttttttttcccatggtggaaaacaact 44022110  T

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Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 151 - 234
Target Start/End: Original strand, 4976447 - 4976530
Alignment:
Q  151 tggtgttgagtgtctatgataaaagtatgttctctaccttatctaatggtcaaaattaattttcccatagtaggaaacaacttc 234  Q
    |||||||||||||||||| |||||||||||||||||  |||||||||||| |||||||| ||||||||||| ||||||||||||    
T  4976447 tggtgttgagtgtctatggtaaaagtatgttctctattttatctaatggttaaaattaactttcccatagtgggaaacaacttc 4976530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 151 - 234
Target Start/End: Original strand, 4994354 - 4994437
Alignment:
Q  151 tggtgttgagtgtctatgataaaagtatgttctctaccttatctaatggtcaaaattaattttcccatagtaggaaacaacttc 234  Q
    |||||||||||||||||| |||||||||||||||||  |||||||||||| |||||||| ||||||||||| ||||||||||||    
T  4994354 tggtgttgagtgtctatggtaaaagtatgttctctattttatctaatggttaaaattaactttcccatagtgggaaacaacttc 4994437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 149 - 257
Target Start/End: Complemental strand, 4975804 - 4975696
Alignment:
Q  149 tctggtgttgagtgtctatgataaaagtatgttctctaccttatctaatggtcaaaattaattttcccatagtaggaaacaacttccctttcccaaatta 248  Q
    |||| |||||||| ||||||||||||||||||||||||| |||| |||||||||||||||  ||| |||| || |||||||||||||| |||||| | ||    
T  4975804 tctgatgttgagtctctatgataaaagtatgttctctactttatttaatggtcaaaattagcttttccatggtgggaaacaacttcccattcccatacta 4975705  T
Q  249 aacaccacc 257  Q
    ||| |||||    
T  4975704 aacgccacc 4975696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 149 - 257
Target Start/End: Complemental strand, 4993712 - 4993604
Alignment:
Q  149 tctggtgttgagtgtctatgataaaagtatgttctctaccttatctaatggtcaaaattaattttcccatagtaggaaacaacttccctttcccaaatta 248  Q
    |||| |||||||| ||||||||||||||||||||||||| |||| |||||||||||||||  ||| |||| || | |||||||||||| |||||| | ||    
T  4993712 tctgatgttgagtctctatgataaaagtatgttctctactttatttaatggtcaaaattagcttttccatggtggaaaacaacttcccattcccatacta 4993613  T
Q  249 aacaccacc 257  Q
    ||| |||||    
T  4993612 aacgccacc 4993604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 151 - 243
Target Start/End: Original strand, 41519867 - 41519959
Alignment:
Q  151 tggtgttgagtgtctatgataaaagtatgttctctaccttatctaatggtcaaaattaattttcccatagtaggaaacaacttccctttccca 243  Q
    |||||||| ||||||||| |||||||||||||||||| |||| ||| ||||||||  || |||||||| || ||||| |||||||||||||||    
T  41519867 tggtgttgggtgtctatggtaaaagtatgttctctactttatttaacggtcaaaaaaaactttcccatggtgggaaaaaacttccctttccca 41519959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 151 - 241
Target Start/End: Complemental strand, 37545782 - 37545692
Alignment:
Q  151 tggtgttgagtgtctatgataaaagtatgttctctaccttatctaatggtcaaaattaattttcccatagtaggaaacaacttccctttcc 241  Q
    |||||||||||||||||||||| | | |||||  ||| | |||||||||||||| |||| |||||||| || |||||||||||||||||||    
T  37545782 tggtgttgagtgtctatgataagaatgtgttcattacttaatctaatggtcaaatttaactttcccatggtgggaaacaacttccctttcc 37545692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 151 - 227
Target Start/End: Original strand, 8536828 - 8536904
Alignment:
Q  151 tggtgttgagtgtctatgataaaagtatgttctctaccttatctaatggtcaaaattaattttcccatagtaggaaa 227  Q
    ||||||||||||||||||||||||  ||||||||||| ||||||||||||||| ||| | ||| |||| ||||||||    
T  8536828 tggtgttgagtgtctatgataaaaccatgttctctactttatctaatggtcaacatttacttttccatggtaggaaa 8536904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 151 - 257
Target Start/End: Complemental strand, 42369749 - 42369643
Alignment:
Q  151 tggtgttgagtgtctatgataaaagtatgttctctaccttatctaatggtcaaaattaattttcccatagtaggaaacaacttccctttcccaaattaaa 250  Q
    |||||||||||||||||||||||| |||||||||||| |||||||||||  || ||| | |||||||| |   |||||||||| ||||| ||| | ||||    
T  42369749 tggtgttgagtgtctatgataaaattatgttctctactttatctaatggctaatatttactttcccatggattgaaacaactttccttttccatactaaa 42369650  T
Q  251 caccacc 257  Q
    | |||||    
T  42369649 ccccacc 42369643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 151 - 243
Target Start/End: Original strand, 42370892 - 42370984
Alignment:
Q  151 tggtgttgagtgtctatgataaaagtatgttctctaccttatctaatggtcaaaattaattttcccatagtaggaaacaacttccctttccca 243  Q
    |||||| ||||||||||||||||| ||| ||||| || ||||||||||| ||| ||| | |||||||| || ||||||||||| || ||||||    
T  42370892 tggtgtcgagtgtctatgataaaactatattctccactttatctaatggccaatatttactttcccatggtgggaaacaactttccattccca 42370984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 154 - 218
Target Start/End: Complemental strand, 8536240 - 8536176
Alignment:
Q  154 tgttgagtgtctatgataaaagtatgttctctaccttatctaatggtcaaaattaattttcccat 218  Q
    |||||||||||||||||||||  ||||||||||| ||||||||| ||||| ||| | ||||||||    
T  8536240 tgttgagtgtctatgataaaatcatgttctctactttatctaatcgtcaatatttactttcccat 8536176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 151 - 234
Target Start/End: Original strand, 41768685 - 41768768
Alignment:
Q  151 tggtgttgagtgtctatgataaaagtatgttctctaccttatctaatggtcaaaattaattttcccatagtaggaaacaacttc 234  Q
    |||||||||| | |||||||||   | |||||| ||||| ||||||||||||||||| | |||||||| || ||||||||||||    
T  41768685 tggtgttgagagactatgataactatgtgttctttacctaatctaatggtcaaaattgactttcccatggtgggaaacaacttc 41768768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 191 - 243
Target Start/End: Complemental strand, 36391023 - 36390971
Alignment:
Q  191 atctaatggtcaaaattaattttcccatagtaggaaacaacttccctttccca 243  Q
    |||||||||| |||||| | |||||||| || |||||||||||||||||||||    
T  36391023 atctaatggttaaaatttactttcccatggtgggaaacaacttccctttccca 36390971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 191 - 250
Target Start/End: Original strand, 30545417 - 30545476
Alignment:
Q  191 atctaatggtcaaaattaattttcccatagtaggaaacaacttccctttcccaaattaaa 250  Q
    |||||||||| ||||  || ||||||||  | ||||||||||||||||||||||||||||    
T  30545417 atctaatggttaaaaaaaactttcccatcatgggaaacaacttccctttcccaaattaaa 30545476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 191 - 241
Target Start/End: Original strand, 15602802 - 15602852
Alignment:
Q  191 atctaatggtcaaaattaattttcccatagtaggaaacaacttccctttcc 241  Q
    |||||||||||||||   |||||||||| || |||||||||||||||||||    
T  15602802 atctaatggtcaaaaaatattttcccatggtgggaaacaacttccctttcc 15602852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 189 - 241
Target Start/End: Complemental strand, 1271299 - 1271247
Alignment:
Q  189 ttatctaatggtcaaaattaattttcccatagtaggaaacaacttccctttcc 241  Q
    |||||||| ||| ||||||| |||||||||||| | ||||||||| |||||||    
T  1271299 ttatctaacggttaaaattagttttcccatagtggaaaacaactttcctttcc 1271247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 225 - 257
Target Start/End: Original strand, 41985908 - 41985940
Alignment:
Q  225 aaacaacttccctttcccaaattaaacaccacc 257  Q
    ||||||||||||||||||||||||||| |||||    
T  41985908 aaacaacttccctttcccaaattaaacgccacc 41985940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 149 - 250
Target Start/End: Complemental strand, 27763521 - 27763420
Alignment:
Q  149 tctggtgttgagtgtctatgataaaagtatgttctctaccttatctaatggtcaaaattaattttcccatagtaggaaacaacttccctttcccaaatta 248  Q
    ||||||||||||||||| |||||||| |||||||||||  | |||||| ||||||||||| ||||||| | || |||||||||||||||| |||||||||    
T  27763521 tctggtgttgagtgtctttgataaaaatatgttctctatttaatctaacggtcaaaattagttttcccttggtgggaaacaacttcccttccccaaatta 27763422  T
Q  249 aa 250  Q
    ||    
T  27763421 aa 27763420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 8e-19; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 151 - 243
Target Start/End: Complemental strand, 46757530 - 46757438
Alignment:
Q  151 tggtgttgagtgtctatgataaaagtatgttctctaccttatctaatggtcaaaattaattttcccatagtaggaaacaacttccctttccca 243  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||| | |||| ||| || | |||||||| | ||||||||    
T  46757530 tggtgttgagtgtctatgataaaattatgttctctactttatctaatggtcaatatttactttctcatggtggaaaacaactcctctttccca 46757438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 151 - 243
Target Start/End: Complemental strand, 27599317 - 27599225
Alignment:
Q  151 tggtgttgagtgtctatgataaaagtatgttctctaccttatctaatggtcaaaattaattttcccatagtaggaaacaacttccctttccca 243  Q
    |||||||||||||||||||||| | | |||||  ||| | |||||||||||||| |||| |||||||| || |||||||||| ||||||||||    
T  27599317 tggtgttgagtgtctatgataagaatgtgttcattacttaatctaatggtcaaatttaactttcccatggtgggaaacaactcccctttccca 27599225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 154 - 243
Target Start/End: Complemental strand, 12732350 - 12732261
Alignment:
Q  154 tgttgagtgtctatgataaaagtatgttctctaccttatctaatggtcaaaattaattttcccatagtaggaaacaacttccctttccca 243  Q
    ||||||| ||||||||||||| |||||||| ||| | ||||||||||||| ||| | |||||||| || ||||||   ||||||||||||    
T  12732350 tgttgagagtctatgataaaactatgttctttacatgatctaatggtcaatatttactttcccatggtgggaaactctttccctttccca 12732261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 151 - 243
Target Start/End: Original strand, 27600037 - 27600129
Alignment:
Q  151 tggtgttgagtgtctatgataaaagtatgttctctaccttatctaatggtcaaaattaattttcccatagtaggaaacaacttccctttccca 243  Q
    |||||||||| ||||||||||| | | |||||  ||| | ||||| |||||||| |||| |||||||| || |||||||||| ||||||||||    
T  27600037 tggtgttgagagtctatgataagaatgtgttcattacttaatctagtggtcaaatttaactttcccatggtgggaaacaactcccctttccca 27600129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 154 - 228
Target Start/End: Complemental strand, 40905134 - 40905060
Alignment:
Q  154 tgttgagtgtctatgataaaagtatgttctctaccttatctaatggtcaaaattaattttcccatagtaggaaac 228  Q
    ||||||| ||| ||| ||||| |||||||| ||| | |||||| | |||||||||| ||||||||||||||||||    
T  40905134 tgttgagagtccatggtaaaaatatgttctttacttgatctaaggatcaaaattaactttcccatagtaggaaac 40905060  T

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Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 149 - 243
Target Start/End: Original strand, 46759202 - 46759296
Alignment:
Q  149 tctggtgttgagtgtctatgataaaagtatgttctctaccttatctaatggtcaaaattaattttcccatagtaggaaacaacttccctttccca 243  Q
    ||||||||| ||| | ||| ||| ||||||||||||||| ||||||||||||||| ||||  ||| | ||  | |||||||||| ||||||||||    
T  46759202 tctggtgttaagtatgtataatagaagtatgttctctactttatctaatggtcaagattagctttgctatgatgggaaacaactcccctttccca 46759296  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 225 - 257
Target Start/End: Complemental strand, 46756302 - 46756270
Alignment:
Q  225 aaacaacttccctttcccaaattaaacaccacc 257  Q
    ||||||||||||||||||||||||||| |||||    
T  46756302 aaacaacttccctttcccaaattaaacgccacc 46756270  T

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Target: scaffold0071 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 164 - 243
Target Start/End: Original strand, 11873 - 11951
Alignment:
Q  164 ctatgataaaagtatgttctctaccttatctaatggtcaaaattaattttcccatagtaggaaacaacttccctttccca 243  Q
    ||||||||||| |||||||||||| | ||||||||||||| ||||| |||||||| || ||||||   ||||||||||||    
T  11873 ctatgataaaaatatgttctctacttaatctaatggtcaagattaactttcccatggt-ggaaactctttccctttccca 11951  T

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Target: scaffold0041 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 154 - 228
Target Start/End: Original strand, 44884 - 44958
Alignment:
Q  154 tgttgagtgtctatgataaaagtatgttctctaccttatctaatggtcaaaattaattttcccatagtaggaaac 228  Q
    ||||||| ||| ||| ||||| |||||||| ||| | |||||| | |||||||||| ||||||||||||||||||    
T  44884 tgttgagagtccatggtaaaaatatgttctttacttgatctaaggatcaaaattaactttcccatagtaggaaac 44958  T

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Target: scaffold0119 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 189 - 241
Target Start/End: Original strand, 29938 - 29990
Alignment:
Q  189 ttatctaatggtcaaaattaattttcccatagtaggaaacaacttccctttcc 241  Q
    |||||||| ||| ||||||| |||||||||||| | ||||||||| |||||||    
T  29938 ttatctaacggttaaaattagttttcccatagtggaaaacaactttcctttcc 29990  T

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Target: scaffold0119; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 189 - 233
Target Start/End: Original strand, 36620 - 36664
Alignment:
Q  189 ttatctaatggtcaaaattaattttcccatagtaggaaacaactt 233  Q
    ||||||||  |||||||||| |||||||||||| |||||||||||    
T  36620 ttatctaacagtcaaaattagttttcccatagtgggaaacaactt 36664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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