View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1345_high_59 (Length: 485)
Name: NF1345_high_59
Description: NF1345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1345_high_59 |
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Alignment Details
Target: chr8 (Bit Score: 319; Significance: 1e-180; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 52 - 378
Target Start/End: Complemental strand, 2841347 - 2841021
Alignment:
| Q |
52 |
gtagataatactatactcttatttcgctgacaaataattctattaatcacttttaggagtcttaggaagctgacatacatagataaatttcatgaatacg |
151 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
2841347 |
gtagctaatactatactcttatttcgctgacaaataattctattaatcacttttaggagtcttgggaagctgacatacatagataaatttcatgaatacg |
2841248 |
T |
|
| Q |
152 |
ggttaacattcaagaagcattatgaagaagggaaattaccaaactacgtggtgatagaacaaagatttttcgacttgttatcaaagacaaagaaacacaa |
251 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2841247 |
ggttaacattcaagaagcattatgaagaagggaaattaccaaactacgtggtgatagaacaaagatttttcgacttgttatcaaagacaaagaaacacaa |
2841148 |
T |
|
| Q |
252 |
attattaccaatttaccatacattctcttggttggatgaaatgatgaatcaaaataaaaacaatactaatgaaacaagtatggattatatatttgtaagg |
351 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2841147 |
attattaccaatttaccatacattctcttggttggatgaaatgatgaatcaaaataaaaacaatactaatgaaacaagtatggattatatatttgtaagg |
2841048 |
T |
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| Q |
352 |
tacattgaagagtttacctcaaacata |
378 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
2841047 |
tacattgaagagtttacctcaaacata |
2841021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 52 - 378
Target Start/End: Complemental strand, 2846034 - 2845708
Alignment:
| Q |
52 |
gtagataatactatactcttatttcgctgacaaataattctattaatcacttttaggagtcttaggaagctgacatacatagataaatttcatgaatacg |
151 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
2846034 |
gtagctaatactatactcttatttcgctgacaaataattctattaatcacttttaggagtcttgggaagctgacatacatagataaatttcatgaatacg |
2845935 |
T |
|
| Q |
152 |
ggttaacattcaagaagcattatgaagaagggaaattaccaaactacgtggtgatagaacaaagatttttcgacttgttatcaaagacaaagaaacacaa |
251 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2845934 |
ggttaacattcaagaagcattatgaagaagggaaattaccaaactacgtggtgatagaacaaagatttttcgacttgttatcaaagacaaagaaacacaa |
2845835 |
T |
|
| Q |
252 |
attattaccaatttaccatacattctcttggttggatgaaatgatgaatcaaaataaaaacaatactaatgaaacaagtatggattatatatttgtaagg |
351 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2845834 |
attattaccaatttaccatacattctcttggttggatgaaatgatgaatcaaaataaaaacaatactaatgaaacaagtatggattatatatttgtaagg |
2845735 |
T |
|
| Q |
352 |
tacattgaagagtttacctcaaacata |
378 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
2845734 |
tacattgaagagtttacctcaaacata |
2845708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 84 - 235
Target Start/End: Original strand, 2788172 - 2788323
Alignment:
| Q |
84 |
aataattctattaatcacttttaggagtcttaggaagctgacatacatagataaatttcatgaatacgggttaacattcaagaagcattatgaagaaggg |
183 |
Q |
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||||||||||||||||||||| ||||||||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
2788172 |
aataattctattaatcactttcaggagtcttagaaagctgaaatacatagaaaaatttcatgaatacgggttaacattcaagaagcattgtgaagaaggg |
2788271 |
T |
|
| Q |
184 |
aaattaccaaactacgtggtgatagaacaaagatttttcgacttgttatcaa |
235 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2788272 |
aaattaccaaactacgtggtgatagaacaaagatttttcgacttgttatcaa |
2788323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 65 - 235
Target Start/End: Original strand, 7363694 - 7363863
Alignment:
| Q |
65 |
tactcttatttcgctgacaaataattctattaatcacttttaggagtcttaggaagctgacatacatagataaatttcatgaatacgggttaacattcaa |
164 |
Q |
| |
|
|||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||||| |
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| T |
7363694 |
tactcttatttcgctgacaaataattttat-aatcactttcaggagtcttaggaagcttaaatacatagataaatttcatgaatacggattaacattcaa |
7363792 |
T |
|
| Q |
165 |
gaagcattatgaagaagggaaattaccaaactacgtggtgatagaacaaagatttttcgacttgttatcaa |
235 |
Q |
| |
|
|||| ||| ||||||||||||||||| ||||||| ||||||||||||||| | |||| |||||||||||| |
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| T |
7363793 |
gaagtattgtgaagaagggaaattactaaactacttggtgatagaacaaaaaaatttcaacttgttatcaa |
7363863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 233 - 339
Target Start/End: Original strand, 2832208 - 2832314
Alignment:
| Q |
233 |
caaagacaaagaaacacaaattattaccaatttaccatacattctcttggttggatgaaatgatgaatcaaaataaaaacaatactaatgaaacaagtat |
332 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||| ||||||||||||||| |
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| T |
2832208 |
caaagagaaagaaacacaaattattaccaatttaccatacattctcttggctggagaaaacgatgaatcaaaataaaaacaatattaatgaaacaagtat |
2832307 |
T |
|
| Q |
333 |
ggattat |
339 |
Q |
| |
|
|||||| |
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|
| T |
2832308 |
cgattat |
2832314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 183 - 235
Target Start/End: Original strand, 2829526 - 2829578
Alignment:
| Q |
183 |
gaaattaccaaactacgtggtgatagaacaaagatttttcgacttgttatcaa |
235 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
2829526 |
gaaattaccaaactacgtggtgatagaacaaagatttttcgacatgttatcaa |
2829578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 355 - 389
Target Start/End: Original strand, 2832367 - 2832401
Alignment:
| Q |
355 |
attgaagagtttacctcaaacatagatggatccaa |
389 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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| T |
2832367 |
attgaagagtttacctcaaacatagatggatccaa |
2832401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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