View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1345_high_61 (Length: 484)
Name: NF1345_high_61
Description: NF1345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1345_high_61 |
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| [»] scaffold0060 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 226 - 455
Target Start/End: Complemental strand, 32641911 - 32641682
Alignment:
| Q |
226 |
tgtacatacattctaatttatttatgatcagatttcttgttttgtgttaagctaatcaagaactggtctatgatactaatattccaacacctgctaattt |
325 |
Q |
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| T |
32641911 |
tgtacatacattctaatttatttatgatcaaatttcttgttttgtgttaagctaatcaagaactggtctatgatactaatattccaacacctgctaattt |
32641812 |
T |
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| Q |
326 |
gctaatgaatcgaggcaaccattctgacattacttctaaagttgaagcatattgaactcatgttacaattaaacaaacatggaaaaattgggtgttcgac |
425 |
Q |
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| T |
32641811 |
gctaatgaatctaggccaccattctaacattacttctaaagttgaagcatattgaactcatgttacaaataaacaaacatggaaaaattggatgttcgac |
32641712 |
T |
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| Q |
426 |
ccaaaattcaatgatgacaagtcttgttag |
455 |
Q |
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| T |
32641711 |
ccagaattcaatgataacaagtcttgttag |
32641682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 86 - 219
Target Start/End: Complemental strand, 32643271 - 32643138
Alignment:
| Q |
86 |
cacttgtggtaggatggattcattggaaataaattgtttctctaatgttatcctaaacgagttgagaaatggcaagaacatttcattttggatggatttt |
185 |
Q |
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| T |
32643271 |
cacttgtggtaggatggattcattggaaataaattgtttctctaatgttatccgaaaagagttgagaaatggcaagaacatttcattttggatggatttt |
32643172 |
T |
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| Q |
186 |
tggctcggagagcagccttttaatctgaattttc |
219 |
Q |
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| T |
32643171 |
tggctcggagagcagccttttaatctgaattttc |
32643138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 14 - 110
Target Start/End: Complemental strand, 32643388 - 32643292
Alignment:
| Q |
14 |
aggctatttgaaagggactttaaattataggtatggcctagtggaagaaaaacttcttaatccggaaggaaacacttgtggtaggatggattcattg |
110 |
Q |
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| T |
32643388 |
aggctatttaaaaggaactttaaattataggtatggcctagtggaagaaaaacttcttaatctggaaggaaacacttgtggtaggatggattcattg |
32643292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 84; Significance: 1e-39; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 274 - 421
Target Start/End: Complemental strand, 8303200 - 8303053
Alignment:
| Q |
274 |
aagctaatcaagaactggtctatgatactaatattccaacacctgctaatttgctaatgaatcgaggcaaccattctgacattacttctaaagttgaagc |
373 |
Q |
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|||||||||||| |||| |||| | |||||||||||||||||||| ||||||||| |||||| |||| |||||| | |||||||||||||||||||||| |
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| T |
8303200 |
aagctaatcaaggactgatctaggttactaatattccaacacctgaaaatttgctagtgaatctaggccaccattataacattacttctaaagttgaagc |
8303101 |
T |
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| Q |
374 |
atattgaactcatgttacaattaaacaaacatggaaaaattgggtgtt |
421 |
Q |
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| T |
8303100 |
atattaagctcttgttacaaataaacaaacatgcaaaaattgggtgtt |
8303053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0060 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0060
Description:
Target: scaffold0060; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 300 - 397
Target Start/End: Original strand, 62383 - 62480
Alignment:
| Q |
300 |
actaatattccaacacctgctaatttgctaatgaatcgaggcaaccattctgacattacttctaaagttgaagcatattgaactcatgttacaattaa |
397 |
Q |
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| T |
62383 |
actaatattcaaacacctgctaatatgcaaataaatctaggctaccattctaacattacttgtgaggatgaagcatattcaactcttgttacaattaa |
62480 |
T |
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