View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1345_high_65 (Length: 474)
Name: NF1345_high_65
Description: NF1345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1345_high_65 |
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Alignment Details
Target: chr5 (Bit Score: 413; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 1 - 445
Target Start/End: Complemental strand, 37890437 - 37889999
Alignment:
| Q |
1 |
atttttgacagcagtaatttttatttaaacattccattacaacattgagtcggtaaccttttgtcaacttagtataaccaatcacttcacttttgtcatt |
100 |
Q |
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| T |
37890437 |
atttttgacagcagtaatttttatttaaacattccattacaacattgagtcggtaaccttttgtcaacttagtataaccaatcacttcacttttgtcatt |
37890338 |
T |
|
| Q |
101 |
ttatttataccttgaggttcatatgcgatgtataacttcgtataactaataatatttttgctatgtcaaatgtttttactaaaagtatcctatattttaa |
200 |
Q |
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| T |
37890337 |
ttatttataccttgaggttcatatgcgatgtataacttcgtataactaataatatttttgctatgtcaaatgtttttactaaaagtatcctata-tttaa |
37890239 |
T |
|
| Q |
201 |
cgatcatcatctatatatcttactattcataataagatttgattcactaatagatcttctgactgattcatgatttgtaatctcaaatttacaactacgc |
300 |
Q |
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| T |
37890238 |
cgatcatcatctatatatcttactattcataataagatttgattcactaatagatcttctgactgattcatgatttgtaatctcaaatttacaactacgc |
37890139 |
T |
|
| Q |
301 |
cggagaagagtttatttgacctttcgatgatcatgataatctcatcaattgatatgatatgaggtaaatttagagaatattgatgcttttgtatcttagg |
400 |
Q |
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| T |
37890138 |
cggagaagagtttattggacctttcgatgatcatgataatctcatcaat-----tgatatgaggtaaatttagagaatattgatgcttttgtatcttagg |
37890044 |
T |
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| Q |
401 |
atttaggatagataattccattaacttctcaactaatcaagaaga |
445 |
Q |
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| T |
37890043 |
atttaggatagataattccattaacttctcaactaatcaagaaga |
37889999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 327 - 432
Target Start/End: Complemental strand, 37185268 - 37185168
Alignment:
| Q |
327 |
atgatcatgataatctcatcaattgatatgatatgaggtaaatttagagaatattgatgcttttgtatcttaggatttaggatagataattccattaact |
426 |
Q |
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||||||||||||||||||||| ||||||||| |||| | |||||||||| |||||||||||||| ||| ||||| ||| |||||| || ||||| |
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| T |
37185268 |
atgatcatgataatctcatcacttgatatga-----ggtagaattagagaatactgatgcttttgtatgttacgatttgggaatgataatccctgtaact |
37185174 |
T |
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| Q |
427 |
tctcaa |
432 |
Q |
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|||||| |
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| T |
37185173 |
tctcaa |
37185168 |
T |
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