View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1345_high_69 (Length: 469)
Name: NF1345_high_69
Description: NF1345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1345_high_69 |
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Alignment Details
Target: chr8 (Bit Score: 94; Significance: 1e-45; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 185 - 329
Target Start/End: Complemental strand, 16621030 - 16620884
Alignment:
| Q |
185 |
gaaaacaaaagaataaacttaactaacagttacaactgtaagaagtcata---actaattacagctgtgataactaacctgattacactcaaatgagaag |
281 |
Q |
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| T |
16621030 |
gaaaagaaaagaataaacttaactaacagttacagctgtgagaagtcatagtaactaattacagctgtgataactaac-tgattacactcaaatgagaag |
16620932 |
T |
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| Q |
282 |
ttaaactgcgagtgtaaattccaatccaagagtgtaatacgaaaagtc |
329 |
Q |
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| T |
16620931 |
ttaaactgcaaatgtaaagttcaatccaaaagtgtaatacgaaaagtc |
16620884 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 333 - 446
Target Start/End: Complemental strand, 16620843 - 16620735
Alignment:
| Q |
333 |
atatttgaacttccaattcagtggcgcgcgcttatatgaaaaacaaaacgtgacactcaaaccatatataacaataacaacaacactttcttttttgttc |
432 |
Q |
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| T |
16620843 |
atatttgaacttccaattcagtggcgcgc--ttatatgaaa--caaaacgtgaaactcaaaccatata--acaaaaacaacaacactttcttttttgttc |
16620750 |
T |
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| Q |
433 |
tcttc-tataacaaa |
446 |
Q |
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| T |
16620749 |
tcttcttataacaaa |
16620735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 38 - 91
Target Start/End: Complemental strand, 16621109 - 16621056
Alignment:
| Q |
38 |
ttacactattgatgtatgatgattatgtaagaaaattattcttattttttcaag |
91 |
Q |
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| T |
16621109 |
ttacactattgatgtatgatgattatgtaagaaaattattcttattttttcaag |
16621056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 220 - 290
Target Start/End: Complemental strand, 4795739 - 4795669
Alignment:
| Q |
220 |
ctgtaagaagtcataactaattacagctgtgataactaacctgattacactcaaatgagaagttaaactgc |
290 |
Q |
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| T |
4795739 |
ctgtcagaaatcctaactaactacacctgtcataactaacttaattacactcaaataagaagttaaactgc |
4795669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 375 - 438
Target Start/End: Complemental strand, 4794502 - 4794444
Alignment:
| Q |
375 |
acaaaacgtgacactcaaaccatatataacaataacaacaacactttcttttttgttctcttct |
438 |
Q |
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| T |
4794502 |
acaaaacgtgacactcaaacaatata--acaataacaaca---ctttcttttttcttctcttct |
4794444 |
T |
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