View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1345_high_7 (Length: 806)

Name: NF1345_high_7
Description: NF1345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1345_high_7
NF1345_high_7
[»] chr6 (12 HSPs)
chr6 (230-448)||(26877594-26877818)
chr6 (10-177)||(26877425-26877593)
chr6 (488-631)||(26877906-26878054)
chr6 (135-270)||(27714751-27714881)
chr6 (116-258)||(26659981-26660122)
chr6 (116-258)||(26765952-26766093)
chr6 (688-747)||(27588459-27588518)
chr6 (116-264)||(27661499-27661645)
chr6 (55-91)||(27656887-27656923)
chr6 (212-258)||(27607483-27607529)
chr6 (114-167)||(27607548-27607601)
chr6 (143-220)||(27656764-27656839)
[»] scaffold0349 (1 HSPs)
scaffold0349 (135-270)||(17063-17193)
[»] chr4 (5 HSPs)
chr4 (140-214)||(18651604-18651676)
chr4 (135-220)||(18675675-18675758)
chr4 (42-87)||(18727745-18727790)
chr4 (511-575)||(18719910-18719974)
chr4 (135-220)||(18720206-18720289)


Alignment Details
Target: chr6 (Bit Score: 109; Significance: 2e-54; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 230 - 448
Target Start/End: Original strand, 26877594 - 26877818
Alignment:
Q  230 aaagttgacattctatgttgaagtcttcacgagttcttgtacagatgaagaaaatttaggcttgttttcccttcgatttctttattttggcatgatgaaa 329  Q
    |||||| ||||| |||||||||||||||  |||||||||||||| | ||||||||||||||||||||||||||| |||| |||||||||| |||||||||    
T  26877594 aaagttaacattttatgttgaagtcttcgtgagttcttgtacaggttaagaaaatttaggcttgttttcccttctatttatttattttggtatgatgaaa 26877693  T
Q  330 tttttgcttgtaatttttgttccatcaaaagcact-cgtatgc-------tgtgacttttatcaatagattttctttgcttctacatttagtttgtgaag 421  Q
    ||||||||| ||||||| |||||||| |||||||| | |||||       ||||||||||||||||| |||||||||||||| ||||||||||  |||||    
T  26877694 tttttgcttttaattttggttccatccaaagcactccttatgctttgtgatgtgacttttatcaata-attttctttgcttc-acatttagttgatgaag 26877791  T
Q  422 ttaaatttactttaagtaagtatacat 448  Q
    | ||||||||||| |||||||||||||    
T  26877792 tcaaatttacttttagtaagtatacat 26877818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 108; E-Value: 8e-54
Query Start/End: Original strand, 10 - 177
Target Start/End: Original strand, 26877425 - 26877593
Alignment:
Q  10 tcatagggaggatgtttcttcgtgcnnnnnnnatggaaatttaagaaattataaatgaaaacatttttacacataaatcttatcaacnnnnnnnn-cttc 108  Q
    ||||||||| |||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||    
T  26877425 tcatagggatgatgtttcttcgtgcttttttgatggaaatttaagaaattataaatgaaaacatttttacacataaatcttatcaacttttttcttcttc 26877524  T
Q  109 ttatatttctccctgttcatatggttaaaaggtcgaaatgaaggttctcaaagagtttgcaactgctta 177  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26877525 ttttatttctccctgttcatatggttaaaaggtcgaaatgaaggttctcaaagagtttgcaactgctta 26877593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 488 - 631
Target Start/End: Original strand, 26877906 - 26878054
Alignment:
Q  488 agtcccttttctatggagtttttctaggaagtgacatgtattgtatttta-----atgtactaaattatgtatctctcacaatgtcatatgatttttaat 582  Q
    |||| ||||||| ||||||||| ||||||||||  ||||||||||| |||     ||| ||||||||||||||||||| |||||||||| ||||| ||||    
T  26877906 agtcgcttttctctggagttttactaggaagtggtatgtattgtatcttatcttaatgcactaaattatgtatctctcgcaatgtcataagatttctaat 26878005  T
Q  583 tgggaaagaaaatccttcttctgaaatattgatttaatcttatcttcta 631  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||    
T  26878006 tgggaaagaaaatccttcttctgaaatattgatttaattttatcttcta 26878054  T

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Target: chr6; HSP #4
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 135 - 270
Target Start/End: Complemental strand, 27714881 - 27714751
Alignment:
Q  135 aaaaggtcgaaatgaaggttctcaaagagtttgcaactgcttagagttcgacaagtagactatattattgtaaattttagccacttgaagactataaagt 234  Q
    |||| ||||||||||||||||| ||||||||||||||     | ||||| ||||||||||||  ||||| |||||||||||||||| |||  ||||||||    
T  27714881 aaaatgtcgaaatgaaggttctgaaagagtttgcaac-----aaagttcaacaagtagactaccttattttaaattttagccactttaagcttataaagt 27714787  T
Q  235 tgacattctatgttgaagtcttcacgagttcttgta 270  Q
    |||||||  |||||||| |||||||||||| |||||    
T  27714786 tgacatttgatgttgaattcttcacgagttattgta 27714751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 116 - 258
Target Start/End: Original strand, 26659981 - 26660122
Alignment:
Q  116 tctccctgttcatatggtt-aaaaggtcgaaatgaaggttctcaaagagtttgcaactgcttagagttcgacaagtagactatattattgtaaattttag 214  Q
    |||||||||||  |||||| |||| |||||||||||||||| ||  ||||||||||||||| | ||||| ||||||||||||| ||||| |||||||||     
T  26659981 tctccctgttctaatggttcaaaatgtcgaaatgaaggttcaca--gagtttgcaactgctcaaagttcaacaagtagactatcttattttaaattttat 26660078  T
Q  215 ccacttgaagactataaagttgacattctatgttgaagtcttca 258  Q
    |||||| |||  || ||| |||||| | |||||| |||||||||    
T  26660079 ccactttaagcttacaaacttgacaatttatgttaaagtcttca 26660122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 116 - 258
Target Start/End: Original strand, 26765952 - 26766093
Alignment:
Q  116 tctccctgttcatatggtt-aaaaggtcgaaatgaaggttctcaaagagtttgcaactgcttagagttcgacaagtagactatattattgtaaattttag 214  Q
    |||||||||||  |||||| |||| |||||||||||||||| ||  ||||||||||||||| | ||||| ||||||||||||| ||||| |||||||||     
T  26765952 tctccctgttctaatggttcaaaatgtcgaaatgaaggttcaca--gagtttgcaactgctcaaagttcaacaagtagactatcttattttaaattttat 26766049  T
Q  215 ccacttgaagactataaagttgacattctatgttgaagtcttca 258  Q
    |||||| |||  || ||| |||||| | |||||| |||||||||    
T  26766050 ccactttaagcttacaaacttgacaatttatgttaaagtcttca 26766093  T

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Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 688 - 747
Target Start/End: Complemental strand, 27588518 - 27588459
Alignment:
Q  688 ttttctctaaatataaactaagttttcattcttctttcactgtatattgtcaggaaacca 747  Q
    |||||||||  ||||||| |||| ||||||||||||| ||||||||||||||||||||||    
T  27588518 ttttctctatttataaaccaagtattcattcttctttgactgtatattgtcaggaaacca 27588459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 116 - 264
Target Start/End: Complemental strand, 27661645 - 27661499
Alignment:
Q  116 tctccctgttcatatggttaaaaggtcgaaatgaaggttctcaaagagtttgcaactgcttagagttcgacaagtagactatattattgtaaattttagc 215  Q
    ||||| |||||  ||||||| || ||||| ||||| ||||||   |||||||| |||||||| || || ||||||||||  | |||  |||||||| |||    
T  27661645 tctccatgttctgatggttacaatgtcgacatgaaagttctcc--gagtttgcgactgcttaaagatcaacaagtagaccgtcttaaggtaaatttaagc 27661548  T
Q  216 cacttgaagactataaagttgacattctatgttgaagtcttcacgagtt 264  Q
    ||||| |||  |||||||||||||||   |||||||||||||| |||||    
T  27661547 cactttaaggttataaagttgacattaggtgttgaagtcttcatgagtt 27661499  T

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Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 91
Target Start/End: Complemental strand, 27656923 - 27656887
Alignment:
Q  55 aaattataaatgaaaacatttttacacataaatctta 91  Q
    |||||||||||||||||||||||||||||||||||||    
T  27656923 aaattataaatgaaaacatttttacacataaatctta 27656887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 212 - 258
Target Start/End: Complemental strand, 27607529 - 27607483
Alignment:
Q  212 tagccacttgaagactataaagttgacattctatgttgaagtcttca 258  Q
    ||||||||| ||| ||||||||||||||||| |||||||||||||||    
T  27607529 tagccactttaagcctataaagttgacattcgatgttgaagtcttca 27607483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 167
Target Start/End: Complemental strand, 27607601 - 27607548
Alignment:
Q  114 tttctccctgttcatatggttaaaaggtcgaaatgaaggttctcaaagagtttg 167  Q
    ||||||| ||||||||||||||||| ||| ||||||||||||||  ||||||||    
T  27607601 tttctccttgttcatatggttaaaatgtcaaaatgaaggttctctcagagtttg 27607548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 143 - 220
Target Start/End: Complemental strand, 27656839 - 27656764
Alignment:
Q  143 gaaatgaaggttctcaaagagtttgcaactgcttagagttcgacaagtagactatattattgtaaattttagccactt 220  Q
    ||||||||||||||||  |||||||||||||| || ||||| | |||||||||   |||| || ||||||||||||||    
T  27656839 gaaatgaaggttctca--gagtttgcaactgcataaagttcaataagtagactgacttatagttaattttagccactt 27656764  T

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Target: scaffold0349 (Bit Score: 60; Significance: 4e-25; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 135 - 270
Target Start/End: Original strand, 17063 - 17193
Alignment:
Q  135 aaaaggtcgaaatgaaggttctcaaagagtttgcaactgcttagagttcgacaagtagactatattattgtaaattttagccacttgaagactataaagt 234  Q
    |||| ||||||||||||||||| ||||||||||||||     | ||||| ||||||||||||  ||||| |||||||||||||||| |||  ||||||||    
T  17063 aaaatgtcgaaatgaaggttctgaaagagtttgcaac-----aaagttcaacaagtagactaccttattttaaattttagccactttaagcttataaagt 17157  T
Q  235 tgacattctatgttgaagtcttcacgagttcttgta 270  Q
    |||||||  |||||||| |||||||||||| |||||    
T  17158 tgacatttgatgttgaattcttcacgagttattgta 17193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 140 - 214
Target Start/End: Complemental strand, 18651676 - 18651604
Alignment:
Q  140 gtcgaaatgaaggttctcaaagagtttgcaactgcttagagttcgacaagtagactatattattgtaaattttag 214  Q
    |||||||| ||||||||||  ||||||||||||||||| ||||| | |||||||| || ||||||||||||||||    
T  18651676 gtcgaaataaaggttctca--gagtttgcaactgcttaaagttcaataagtagaccatcttattgtaaattttag 18651604  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 135 - 220
Target Start/End: Complemental strand, 18675758 - 18675675
Alignment:
Q  135 aaaaggtcgaaatgaaggttctcaaagagtttgcaactgcttagagttcgacaagtagactatattattgtaaattttagccactt 220  Q
    |||| |||||||| ||||||||||  |||||||||||  |||| ||||| | | |||||| || ||||||||||||||||||||||    
T  18675758 aaaatgtcgaaataaaggttctca--gagtttgcaaccacttaaagttcaataggtagaccatcttattgtaaattttagccactt 18675675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 87
Target Start/End: Complemental strand, 18727790 - 18727745
Alignment:
Q  42 atggaaatttaagaaattataaatgaaaacatttttacacataaat 87  Q
    |||||||||| ||||||||||| |||||||||| ||||||||||||    
T  18727790 atggaaattttagaaattataattgaaaacattgttacacataaat 18727745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 511 - 575
Target Start/End: Complemental strand, 18719974 - 18719910
Alignment:
Q  511 ctaggaagtgacatgtattgtattttaatgtactaaattatgtatctctcacaatgtcatatgat 575  Q
    ||||||||||||||||||| ||| |||||| ||| ||| |||||||| || | ||||||||||||    
T  18719974 ctaggaagtgacatgtattatatcttaatgcacttaatcatgtatctatccctatgtcatatgat 18719910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 135 - 220
Target Start/End: Complemental strand, 18720289 - 18720206
Alignment:
Q  135 aaaaggtcgaaatgaaggttctcaaagagtttgcaactgcttagagttcgacaagtagactatattattgtaaattttagccactt 220  Q
    |||| |||||||| ||||||||||  |||||||||||  |||| ||||| | | |||||| || |||||| |||||||||||||||    
T  18720289 aaaatgtcgaaataaaggttctca--gagtttgcaaccacttaaagttcaataggtagaccatcttattgaaaattttagccactt 18720206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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