View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1345_high_70 (Length: 464)
Name: NF1345_high_70
Description: NF1345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1345_high_70 |
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Alignment Details
Target: chr2 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 30 - 456
Target Start/End: Complemental strand, 36939712 - 36939303
Alignment:
| Q |
30 |
tttcctaatatgactaatcacaaaaatcttactctatcaaattttaagacaatatctacaaataatttctactctagaacctacatataattcaaggagt |
129 |
Q |
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| T |
36939712 |
tttcctaatatgactaatcacaaaaatcttactctatcaaattttaagacaatatctacaaataatttctactctagaacctacatataattcaaggagt |
36939613 |
T |
|
| Q |
130 |
gtatctcctacgcatacattctaaacagttactcacactgcacaaaagatagtgccatgtgccactttcaagatagtggcttggtatcgtcattaaacac |
229 |
Q |
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| T |
36939612 |
gtatctcctacgcatacattgta-----------------cacaaaagatagtgccatgagccactttcaagatagtggcttggtatcgtcattaaacac |
36939530 |
T |
|
| Q |
230 |
aaattaatgtggccattccttaattcacaaattgtgtacaggataaaatacgtacgtaccaaaccaaaatagtgcttgatatgcaaaatcttttttgtcn |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36939529 |
taattaatgtggccattccttaattcacaaattgtgtacaggataaaatacgtacgtaccaaaccaaaatagtgcttgatatgcaaaatcttttttgtca |
36939430 |
T |
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| Q |
330 |
nnnnnncaaaaggtatatgcaaatttgattccaaaacatcatcaaccatgtattgtcaacgatgccatcacgtatgacatccttttatgacaaaacaatg |
429 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36939429 |
aaaaaataaaaggtatatacaaatttgattccaaaacatcatcaaccatgtattgtcaacgatgccatcacgtatgacatccttttatgacaaaacaatg |
36939330 |
T |
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| Q |
430 |
tcggttgttttaaggctatcctatgct |
456 |
Q |
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||||||||||||||||||||||||||| |
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| T |
36939329 |
tcggttgttttaaggctatcctatgct |
36939303 |
T |
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