View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1345_high_72 (Length: 459)
Name: NF1345_high_72
Description: NF1345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1345_high_72 |
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Alignment Details
Target: chr2 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 7 - 288
Target Start/End: Original strand, 45521736 - 45522018
Alignment:
| Q |
7 |
gctctgtggacttagagccaaagctaccattctcttgatgccaaaattcgatataaattcattcttgaatcttgttagcaaacatggagtaacagttgca |
106 |
Q |
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| T |
45521736 |
gctctgtggactcagagccaaagctaccattctcttgatgccaaaattcgatataaattcattcttgaatcttgttaacaaacatggagtaacagttgca |
45521835 |
T |
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| Q |
107 |
cctgttgttcctcctattgtattggcaatagcaaaatcaccagatcttaataagtatgatctatcttcaattaggatattgaaatcaggtggtgctccac |
206 |
Q |
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| T |
45521836 |
cctgttgttcctcctattgtattggcaatagcaaaatcaccagatcttaataagtatgatctatcttcaattaggatattaaaatcaggtggtgctccac |
45521935 |
T |
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| Q |
207 |
ttggtaaagaacttgaagacactgttaggactaaatttccaaacgcaattcttggacaggtaggtacctt-catttctttctt |
288 |
Q |
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| T |
45521936 |
ttggtaaagaacttgaagacactgttagaactaaatttccaaacgcaattcttggacaggtaggtaccttacatttctttctt |
45522018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 377 - 429
Target Start/End: Original strand, 45522074 - 45522126
Alignment:
| Q |
377 |
ttgtatctaccaagatatcagatttcatgattatcacacaatcaatgaaaatc |
429 |
Q |
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| T |
45522074 |
ttgtatctaccaagatatcagatttcatgattatgacacaatcaatgaaaatc |
45522126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 102 - 246
Target Start/End: Original strand, 350833 - 350977
Alignment:
| Q |
102 |
ttgcacctgttgttcctcctattgtattggcaatagcaaaatcaccagatcttaataagtatgatctatcttcaattaggatattgaaatcaggtggtgc |
201 |
Q |
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| T |
350833 |
ttgctcctgttgtgccaccaattgttttggctattgctaagtcacctgaacttgataaatatgacctttcatccattagggtattgaaatctggtggggc |
350932 |
T |
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| Q |
202 |
tccacttggtaaagaacttgaagacactgttaggactaaatttcc |
246 |
Q |
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| T |
350933 |
cccacttggtaaagaacttgaggatactgttagggccaaatttcc |
350977 |
T |
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