View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1345_high_73 (Length: 459)
Name: NF1345_high_73
Description: NF1345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1345_high_73 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 30 - 457
Target Start/End: Original strand, 1196937 - 1197364
Alignment:
| Q |
30 |
cttcaaccatcttcaaaatactctcaaaagtagagacttcacaaggaatcctcaatacaccagcttgttgaaacccaaattcttcttcagcttctctcaa |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1196937 |
cttcaaccatcttcaaaatactctcaaaagtagagacttcacaaggaatcctcaatacaccagcttgttgaaacccaaattcttcttcagcttctctcaa |
1197036 |
T |
|
| Q |
130 |
aagaatctgaaaagcttgatgacccaaatattcagttggtatgatgaacctcttaagctcttctccaacacaaacagctaaatacccttttggaacagaa |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
1197037 |
aagaatctgaaaagcttgatgacccaaatattcagttggtatgatgaacctcttaagctcttctccaacacaaacagctaaatatccttttggaacagaa |
1197136 |
T |
|
| Q |
230 |
ccattgttgtttgatgatgttgttcctccttcacgttcagaaagagaaagtgttctttttagaaacttcatgcttttgcttctagtgatggtggtggtgt |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1197137 |
ccattgttgtttgatgatgttgttcctccttcacgttcagaaagagaaagtgttctttttagaaacttcatgcttttgcttctagtgatggtggtggtgt |
1197236 |
T |
|
| Q |
330 |
tggctgtggtttttgatgagtttgctatttttctccatttcttaaggatctgttgaagtctaacaatttctctaattttgttagatttcttttgatccat |
429 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1197237 |
tggctgtggtttttgatgagtttgctatttttctccatttcttaaggatctgttgaagtctaacaatttctctaattttgttagatttcttttgatccat |
1197336 |
T |
|
| Q |
430 |
tgacatggtgatgatattgttggagatg |
457 |
Q |
| |
|
||||||||||||||||||| ||| |||| |
|
|
| T |
1197337 |
tgacatggtgatgatattgatggtgatg |
1197364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 30 - 444
Target Start/End: Complemental strand, 7289645 - 7289231
Alignment:
| Q |
30 |
cttcaaccatcttcaaaatactctcaaaagtagagacttcacaaggaatcctcaatacaccagcttgttgaaacccaaattcttcttcagcttctctcaa |
129 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7289645 |
cttcaaccatcttcaaaatacactcaaaagtagagacttcacaaagaatcctcaaaacaccagcttgttgaaacccaaattcttcttcagcttctctcaa |
7289546 |
T |
|
| Q |
130 |
aagaatctgaaaagcttgatgacccaaatattcagt---tggtatgatgaacctcttaagctcttctccaacacaaacagctaaatacccttttggaaca |
226 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |||||||||| |||||||||||||||||||||| | ||| |
|
|
| T |
7289545 |
aagaatctgaaaagcttgatgacacaaatattcagttggtggtatgatgaacctcttaagttcttctccaatacaaacagctaaatacccttttaggaca |
7289446 |
T |
|
| Q |
227 |
gaaccattgttgtttgatgatgttgttcctccttcacgttcagaaagagaaagtgttctttttagaaacttcatgcttttgcttctagtgatggtggtgg |
326 |
Q |
| |
|
|||||||||| |||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| || |||||||| ||| |
|
|
| T |
7289445 |
taaccattgttctttgatgatgttattcctccttcacgttcagatagagaaagtgttctttttagaaacttcatgattttgcttttattgatggtgttgg |
7289346 |
T |
|
| Q |
327 |
tgttggctgtggtttttgatgagtttgctatttttctccatttcttaaggatctgttgaagtctaacaatttctctaattttgttagatttcttttgatc |
426 |
Q |
| |
|
|||||| | | ||| | || ||||| |||||||| | |||||| ||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
7289345 |
tgttgg-tttaatttgt-ataagttttctattttttttcatttc-taaggatttgttgaagtctaacgatttctctaattttgttagatttcttttgatc |
7289249 |
T |
|
| Q |
427 |
cattgacatggtgatgat |
444 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
7289248 |
cattgacatggtgatgat |
7289231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 64; Significance: 8e-28; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 30 - 209
Target Start/End: Complemental strand, 50471318 - 50471139
Alignment:
| Q |
30 |
cttcaaccatcttcaaaatactctcaaaagtagagacttcacaaggaatcctcaatacaccagcttgttgaaacccaaattcttcttcagcttctctcaa |
129 |
Q |
| |
|
|||||||||||||||| ||||||||||| || |||||||||||||| |||| ||||||| ||||| ||||||||||||||||||||||||||| | |
|
|
| T |
50471318 |
cttcaaccatcttcaagatactctcaaacactgaaacttcacaaggaattctcagaacaccagtttgttcaaacccaaattcttcttcagcttctctgag |
50471219 |
T |
|
| Q |
130 |
aagaatctgaaaagcttgatgacccaaatattcagttggtatgatgaacctcttaagctcttctccaacacaaacagcta |
209 |
Q |
| |
|
| || ||||| ||||||||| ||||||| || |||||||| | ||||| ||||| ||| | ||||||||||| |||| |
|
|
| T |
50471218 |
taatatatgaaaggcttgatgagccaaatactcggttggtataacaaacctgttaaggtctacaccaacacaaacggcta |
50471139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 360 - 421
Target Start/End: Complemental strand, 50470991 - 50470930
Alignment:
| Q |
360 |
ttctccatttcttaaggatctgttgaagtctaacaatttctctaattttgttagatttcttt |
421 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||| |||||||||| ||||||| |
|
|
| T |
50470991 |
ttctccatttcttaaggatctgttgaagtctaacgatttctctgattttgttaggtttcttt |
50470930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University