View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1345_high_75 (Length: 455)
Name: NF1345_high_75
Description: NF1345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1345_high_75 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 1 - 379
Target Start/End: Complemental strand, 16948210 - 16947831
Alignment:
| Q |
1 |
actggttctccaatttacacccaaatatcccttccttcacatacaaatattataaaccattacaaccatgcattgaagctaatcttttcaacaagctaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16948210 |
actggttctccaatttacacccaaatatcccttccttcacatacaaatattataaaccattacaaccatgcattgaagctaatcttttcaacaagctaaa |
16948111 |
T |
|
| Q |
101 |
-caaaagaaccttattcttttatagnnnnnnnncatcatcataggaactaaaatggccacttcaatttctgcaacaggttgtgttggttcatcattctat |
199 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16948110 |
acaaaagaaccttattcttttatagaaaaaaaacatcatcataggaactaaaatggccacttcaatttctgcaacaggttgtgttggttcatcattctat |
16948011 |
T |
|
| Q |
200 |
ggaagctggggaacttctatagttggtgaagattacaccatgttgactaagtcagtttcttcgcaacttcgtattggaagagttagtaagccagtgaggt |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
16948010 |
ggaagctggggaacttctatagttggtgaagattacaccatgttggctaagtcagtttcttcgcaacttcgtattggaagagttagtaaaccagtgaggt |
16947911 |
T |
|
| Q |
300 |
tgcaacctatgatgaagaatgttaatgaagggaaaggtatttttgctccacttgttgtggttacacgtgatattgttgga |
379 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
16947910 |
tgcaacctatgatgaagaatgttaatgaagggaaaggtatttttgctccacttgttgtggttactcgtgatattgttgga |
16947831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University