View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1345_high_81 (Length: 442)

Name: NF1345_high_81
Description: NF1345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1345_high_81
NF1345_high_81
[»] chr5 (5 HSPs)
chr5 (139-434)||(39099475-39099766)
chr5 (5-150)||(39099869-39100015)
chr5 (49-158)||(3758192-3758301)
chr5 (192-267)||(39194713-39194791)
chr5 (113-175)||(141847-141909)
[»] chr1 (10 HSPs)
chr1 (49-158)||(9221230-9221337)
chr1 (65-121)||(44442278-44442333)
chr1 (57-177)||(46370805-46370925)
chr1 (94-158)||(8836543-8836605)
chr1 (91-154)||(64875-64936)
chr1 (69-158)||(12590656-12590744)
chr1 (56-156)||(47031478-47031576)
chr1 (89-144)||(14774108-14774161)
chr1 (89-157)||(26687531-26687598)
chr1 (68-144)||(28672314-28672388)
[»] chr4 (3 HSPs)
chr4 (49-177)||(50086415-50086542)
chr4 (56-156)||(42956985-42957084)
chr4 (49-154)||(51105918-51106021)
[»] chr7 (6 HSPs)
chr7 (49-157)||(40065790-40065899)
chr7 (100-174)||(28733815-28733889)
chr7 (57-144)||(3256642-3256728)
chr7 (123-177)||(44452121-44452175)
chr7 (132-177)||(46684625-46684670)
chr7 (65-156)||(676396-676484)
[»] scaffold0009 (1 HSPs)
scaffold0009 (57-157)||(189062-189160)
[»] chr2 (5 HSPs)
chr2 (88-177)||(11001490-11001578)
chr2 (46-106)||(28931136-28931196)
chr2 (94-177)||(16717582-16717663)
chr2 (85-173)||(33275936-33276023)
chr2 (89-157)||(18227115-18227181)
[»] chr8 (9 HSPs)
chr8 (65-121)||(29487082-29487138)
chr8 (49-156)||(22209400-22209505)
chr8 (49-155)||(20279562-20279666)
chr8 (49-155)||(21066189-21066293)
chr8 (49-180)||(37166990-37167119)
chr8 (113-177)||(32646792-32646856)
chr8 (85-180)||(7528270-7528363)
chr8 (55-144)||(1576375-1576462)
chr8 (85-146)||(13328360-13328418)
[»] scaffold0192 (1 HSPs)
scaffold0192 (85-156)||(15938-16007)
[»] scaffold0178 (1 HSPs)
scaffold0178 (65-107)||(15910-15952)
[»] chr3 (1 HSPs)
chr3 (68-155)||(39976721-39976805)


Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 139 - 434
Target Start/End: Complemental strand, 39099766 - 39099475
Alignment:
Q  139 aaaatgtttgaagagtgtttggggcactcgttaacaagatctcttatagtttaggttgttttcgcccttgtttgatgaggttgatatctcttcaagatat 238  Q
    |||| |||||||||||||||||| ||||||||||||||| |||         |||||| |||  || ||||||||||||||||||||||||||||| |||    
T  39099766 aaaaagtttgaagagtgtttgggacactcgttaacaagacctc---------aggttgcttttacc-ttgtttgatgaggttgatatctcttcaagttat 39099677  T
Q  239 aaaactccatacaaaataaactatataaata------actaacaagattaaaatgatctatctaattatggggacatacaaaaccaactattggctaagt 332  Q
    |||||||||||||| ||||||||||||||||      | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39099676 aaaactccatacaacataaactatataaatagatgtaagtaacaagattaaaatgatctatctaattatggggacatacaaaaccaactattggctaagt 39099577  T
Q  333 aaccgatcaaaatccatgaatatggcatgtgcaaaattgttggagttcacaaacaaccatgatgcccttaccaattatactttgtctttccaaccctttg 432  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39099576 aaccgatcaaaatccatgaatatggcatgtgcaaaattgttggagttcacaaacaaccatgatgcccttaccaattatactttgtctttccaaccctttg 39099477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 5 - 150
Target Start/End: Complemental strand, 39100015 - 39099869
Alignment:
Q  5 gggaaatgttatcatgtgtttttgg-atactctttaaggactataataaatggtaagtatatataaaaatatgtgtattagatgtattgaaaatcgaaat 103  Q
    ||||||||| | ||||||||||||| ||||||||||||||||||||||| |||||||||| |||||||||||||||||| |||| |||||||||||||||    
T  39100015 gggaaatgtcaacatgtgtttttgggatactctttaaggactataataagtggtaagtatttataaaaatatgtgtattcgatgcattgaaaatcgaaat 39099916  T
Q  104 atttgaacttttttaaaggaataattgtttattttaaaatgtttgaa 150  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  39099915 atttgaacttttttaaaggaataattgtttattttaaaatgtttgaa 39099869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 49 - 158
Target Start/End: Complemental strand, 3758301 - 3758192
Alignment:
Q  49 ataaatggtaagtatatat--aaaaatatgtgtattagatgtattgaaaatcgaaatatttgaacttttttaaaggaataattgtttattttaaaatgtt 146  Q
    |||||| |||||||| |||  ||||| |||| ||||  ||| ||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||    
T  3758301 ataaattgtaagtatttatgaaaaaaaatgtatattcaatgcattgaaaatcgaaatatttga-cttttttaaag-aataattgattattttaaaatgtt 3758204  T
Q  147 tgaagagtgttt 158  Q
    | ||||||||||    
T  3758203 taaagagtgttt 3758192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 192 - 267
Target Start/End: Complemental strand, 39194791 - 39194713
Alignment:
Q  192 ggttgttttcgcccttgtttgatgaggttgatatctcttcaagatataaaactccat---acaaaataaactatataaa 267  Q
    ||||| |||||||||||||||||||||||||||||| |||||| ||||||| | |||   | |||||||||||||||||    
T  39194791 ggttgctttcgcccttgtttgatgaggttgatatcttttcaagttataaaatttcataaaaaaaaataaactatataaa 39194713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 113 - 175
Target Start/End: Complemental strand, 141909 - 141847
Alignment:
Q  113 tttttaaaggaataattgtttattttaaaatgtttgaagagtgtttggggcactcgttaacaa 175  Q
    |||||||| |||||||||||||||||   ||| || |||||||| ||||||||||||||||||    
T  141909 tttttaaaagaataattgtttattttggtatgcttaaagagtgtctggggcactcgttaacaa 141847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 49 - 158
Target Start/End: Original strand, 9221230 - 9221337
Alignment:
Q  49 ataaatggtaagtatatataaaaatatgtgtattagatgtattgaaaatcgaaatatttgaacttttttaaaggaataattgtttattttaaaatgtttg 148  Q
    ||||| ||||||||| ||| |||||||||||||||  || |||| |||||||||||||| ||||||| |||| ||||||||||||||||||||||  ||     
T  9221230 ataaaaggtaagtatttatgaaaatatgtgtattaattgcattggaaatcgaaatattt-aacttttctaaa-gaataattgtttattttaaaatagtta 9221327  T
Q  149 aagagtgttt 158  Q
    ||||||||||    
T  9221328 aagagtgttt 9221337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 65 - 121
Target Start/End: Complemental strand, 44442333 - 44442278
Alignment:
Q  65 tataaaaatatgtgtattagatgtattgaaaatcgaaatatttgaacttttttaaag 121  Q
    ||||||||||||||||||  ||||||||||||| |||||||||| ||||||||||||    
T  44442333 tataaaaatatgtgtatttaatgtattgaaaattgaaatatttg-acttttttaaag 44442278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 57 - 177
Target Start/End: Complemental strand, 46370925 - 46370805
Alignment:
Q  57 taagtatatataaaaatatgtgtattagatgtattgaaaatcgaaatatttgaacttttttaaaggaataattgtttattttaaaatgtttgaagagtgt 156  Q
    ||||||| || ||||||||||||| |  | | ||||||||||||||| ||| || ||||||||| ||||||||| || |||| | ||| || ||||||||    
T  46370925 taagtatttaaaaaaatatgtgtaatcaacgcattgaaaatcgaaatgtttaaatttttttaaa-gaataattgcttgttttgatatgcttaaagagtgt 46370827  T
Q  157 t-tggggcactcgttaacaaga 177  Q
    | |||| |||||||||| ||||    
T  46370826 tctgggacactcgttaaaaaga 46370805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 94 - 158
Target Start/End: Original strand, 8836543 - 8836605
Alignment:
Q  94 aaatcgaaatatttgaacttttttaaaggaataattgtttattttaaaatgtttgaagagtgttt 158  Q
    |||||||||||||||| ||||||||||| |||||||||||||||  ||||| || ||||||||||    
T  8836543 aaatcgaaatatttga-cttttttaaag-aataattgtttatttcgaaatgcttaaagagtgttt 8836605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 91 - 154
Target Start/End: Original strand, 64875 - 64936
Alignment:
Q  91 tgaaaatcgaaatatttgaacttttttaaaggaataattgtttattttaaaatgtttgaagagt 154  Q
    ||||| ||||||||||| ||| ||||||||| ||||||||||||||||| ||||||| ||||||    
T  64875 tgaaattcgaaatattt-aacgtttttaaag-aataattgtttattttagaatgtttaaagagt 64936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 69 - 158
Target Start/End: Original strand, 12590656 - 12590744
Alignment:
Q  69 aaaatatgtgtattagatgtattgaaaatcgaaatatttgaacttttttaaaggaataattgtttattttaaaatgtttgaagagtgttt 158  Q
    |||||| |||||||  ||| |||||||||| |||||||| ||||||||| ||   ||||||||||| ||||||||| || |||| |||||    
T  12590656 aaaatacgtgtattcaatgcattgaaaatcaaaatattt-aactttttttaatagataattgtttaatttaaaatgcttaaagaatgttt 12590744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 156
Target Start/End: Complemental strand, 47031576 - 47031478
Alignment:
Q  56 gtaagtatatataaaaatatgtgtattagatgtattgaaaatcgaaatatttgaacttttttaaaggaataattgtttattttaaaatgtttgaagagtg 155  Q
    |||||||| | ||||||  |||||| |  |||||||| |||||||||||||| |  |||||||||  |||||||  |||||||| ||||||| |||||||    
T  47031576 gtaagtatttgtaaaaacgtgtgtaatgaatgtattggaaatcgaaatatttta--ttttttaaaaaaataattacttattttagaatgtttaaagagtg 47031479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 89 - 144
Target Start/End: Complemental strand, 14774161 - 14774108
Alignment:
Q  89 attgaaaatcgaaatatttgaacttttttaaaggaataattgtttattttaaaatg 144  Q
    |||||||||||||||||||||  |||||||||  |||||||| |||||||| ||||    
T  14774161 attgaaaatcgaaatatttga--ttttttaaacaaataattgattattttagaatg 14774108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 89 - 157
Target Start/End: Complemental strand, 26687598 - 26687531
Alignment:
Q  89 attgaaaatcgaaatatttgaacttttttaaaggaataattgtttattttaaaatgtttgaagagtgtt 157  Q
    |||||||||||||||||||||  ||||||||| | || |||| |||||||| |||| || |||||||||    
T  26687598 attgaaaatcgaaatatttgactttttttaaaag-attattgcttattttagaatgcttaaagagtgtt 26687531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 68 - 144
Target Start/End: Original strand, 28672314 - 28672388
Alignment:
Q  68 aaaaatatgtgtattagatgtattgaaaatcgaaatatttgaacttttttaaaggaataattgtttattttaaaatg 144  Q
    ||||||||||||| |  ||| ||| |||||| ||||||||| |||||||||||  ||||||||||||||||| ||||    
T  28672314 aaaaatatgtgtaatcaatgcatttaaaatcaaaatatttg-acttttttaaa-aaataattgtttattttagaatg 28672388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 49 - 177
Target Start/End: Original strand, 50086415 - 50086542
Alignment:
Q  49 ataaatggtaagtatatataaaaatatgtgtattagatgtattgaaaatcgaaatatttgaacttttttaaaggaataattgtttattttaaaatgtttg 148  Q
    |||| ||||||| || ||| ||||||||||||||  ||| |||||||||| ||||||||||  |||||| || |||||||||||||||||  |||||||     
T  50086415 ataagtggtaagcatttatgaaaatatgtgtattcaatgcattgaaaatcaaaatatttga--tttttttaaagaataattgtttattttggaatgttta 50086512  T
Q  149 aagagtgt-ttggggcactcgttaacaaga 177  Q
    |||||| |   |||||||||||||||||||    
T  50086513 aagagtttcccggggcactcgttaacaaga 50086542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 56 - 156
Target Start/End: Original strand, 42956985 - 42957084
Alignment:
Q  56 gtaagtatatataaaaatatgtgtattagatgtattgaaaatcgaaatatttgaacttttttaaaggaataattgtttattttaaaatgtttgaagagtg 155  Q
    |||||||| ||||||||| |||||| |  ||| |||| |||| |||||||||| | |||||||||  ||||| || |||||||| ||||||| |||||||    
T  42956985 gtaagtatttataaaaatgtgtgtaattaatgcattggaaattgaaatatttg-atttttttaaaataataactgcttattttagaatgtttaaagagtg 42957083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 49 - 154
Target Start/End: Complemental strand, 51106021 - 51105918
Alignment:
Q  49 ataaatggtaagtatatataaaaatatgtgtattagatgtattgaaaatcgaaatatttgaacttttttaaaggaataattgtttattttaaaatgtttg 148  Q
    |||||| |||| ||| ||| |||||||| ||| |   ||||||||||||  |||||||||| ||||||||||  ||||||||||||||||| ||| |||     
T  51106021 ataaatagtaactatttatgaaaatatgcgtaatccgtgtattgaaaattaaaatatttga-cttttttaaat-aataattgtttattttagaatattta 51105924  T
Q  149 aagagt 154  Q
    ||||||    
T  51105923 aagagt 51105918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 7e-16; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 49 - 157
Target Start/End: Original strand, 40065790 - 40065899
Alignment:
Q  49 ataaatggtaagtatatataaaaatatgtgtattagatgtattgaaaatcgaaatatttgaacttttttaaag--gaataattgtttattttaaaatgtt 146  Q
    |||| |||||||||| ||||||||||  |||||| ||||||||||||||| |||||||| |||||||||||||   | || ||| ||||||||||||| |    
T  40065790 ataagtggtaagtatttataaaaatacatgtattcgatgtattgaaaatcaaaatattt-aacttttttaaagaatactacttgcttattttaaaatgat 40065888  T
Q  147 tgaagagtgtt 157  Q
    |||| ||||||    
T  40065889 tgaaaagtgtt 40065899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 100 - 174
Target Start/End: Original strand, 28733815 - 28733889
Alignment:
Q  100 aaatatttgaacttttttaaaggaataattgtttattttaaaatgtttgaagagtgtttg-gggcactcgttaaca 174  Q
    |||||||| ||||||||| || ||||||||||||||||||||||| || ||||||||| | || ||||||||||||    
T  28733815 aaatattt-aactttttttaaagaataattgtttattttaaaatgcttaaagagtgttcgaggacactcgttaaca 28733889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 57 - 144
Target Start/End: Original strand, 3256642 - 3256728
Alignment:
Q  57 taagtatatataaaaatatgtgtattagatgtattgaaaatcgaaatatttgaacttttttaaaggaataattgtttattttaaaatg 144  Q
    ||||||| ||| ||||||||||||||   || |||| ||||||||| ||||| |||||||| || ||||||||| ||||||| |||||    
T  3256642 taagtatttatgaaaatatgtgtattcagtgcattggaaatcgaaacatttg-actttttttaaagaataattgcttattttgaaatg 3256728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 123 - 177
Target Start/End: Original strand, 44452121 - 44452175
Alignment:
Q  123 aataattgtttattttaaaatgtttgaagagtgtttggggcactcgttaacaaga 177  Q
    |||||||  ||| |||| ||||||| |||||||| ||||||||||||||||||||    
T  44452121 aataattacttaatttagaatgtttaaagagtgtctggggcactcgttaacaaga 44452175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 177
Target Start/End: Original strand, 46684625 - 46684670
Alignment:
Q  132 ttattttaaaatgtttgaagagtgtttggggcactcgttaacaaga 177  Q
    |||||||| |||  || |||||||||||||||||||||||||||||    
T  46684625 ttattttagaattcttaaagagtgtttggggcactcgttaacaaga 46684670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 156
Target Start/End: Original strand, 676396 - 676484
Alignment:
Q  65 tataaaaatatgtgtattagatgtattgaaaatcgaaatatttgaacttttttaaaggaataattgtttattttaaaatgtttgaagagtgt 156  Q
    |||||||||||||||| |  ||| ||| ||||||||||||||| ||||||||  ||  |||||||  |||||||| ||||||| ||||||||    
T  676396 tataaaaatatgtgtaatcaatgcatttaaaatcgaaatattt-aacttttt--aataaataattacttattttagaatgtttaaagagtgt 676484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 57 - 157
Target Start/End: Complemental strand, 189160 - 189062
Alignment:
Q  57 taagtatatataaaaatatgtgtattagatgtattgaaaatcgaaatatttgaacttttttaaaggaataattgtttattttaaaatgtttgaagagtgt 156  Q
    ||||||| ||| |||||||||||| |  |||||||  |||| ||||||||| ||||||||||||| |||||||| ||||||||||||| || ||||||||    
T  189160 taagtatttatgaaaatatgtgtaattaatgtattagaaatagaaatattt-aacttttttaaag-aataattgcttattttaaaatgcttaaagagtgt 189063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 88 - 177
Target Start/End: Original strand, 11001490 - 11001578
Alignment:
Q  88 tattgaaaatcgaaatatttgaacttttttaaaggaataattgtttattttaaaatgtttgaagagtgtttgg--ggcactcgttaacaaga 177  Q
    ||||||||||||||| |||||| |||||| |||  |||||||| |||||||||||||||||||| ||||| ||  | |||||||||||||||    
T  11001490 tattgaaaatcgaaacatttga-ctttttaaaa--aataattgcttattttaaaatgtttgaagtgtgttcggaagacactcgttaacaaga 11001578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 46 - 106
Target Start/End: Complemental strand, 28931196 - 28931136
Alignment:
Q  46 ataataaatggtaagtatatataaaaatatgtgtattagatgtattgaaaatcgaaatatt 106  Q
    |||||||||||||| ||| ||| |||| ||||||||| |||||||| ||||| ||||||||    
T  28931196 ataataaatggtaaatatttatgaaaacatgtgtatttgatgtattaaaaattgaaatatt 28931136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 94 - 177
Target Start/End: Complemental strand, 16717663 - 16717582
Alignment:
Q  94 aaatcgaaatatttgaacttttttaaaggaataattgtttattttaaaatgtttgaagagtgtttggggcactcgttaacaaga 177  Q
    ||||| |||||||| || |||||||||| |||||||  |||||||| |||| || |||||||| ||| ||||||||||||||||    
T  16717663 aaatcaaaatattt-aatttttttaaag-aataattacttattttagaatgcttaaagagtgtctggagcactcgttaacaaga 16717582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 85 - 173
Target Start/End: Original strand, 33275936 - 33276023
Alignment:
Q  85 atgtattgaaaatcgaaatatttgaacttttttaaaggaataattgtttattttaaaatgtttgaagagtg-tttggggcactcgttaac 173  Q
    ||||||||||||| ||||||||| ||||||||||||  |||||||  || ||||| |||| || ||||||| ||||||||||| ||||||    
T  33275936 atgtattgaaaattgaaatattt-aacttttttaaa-aaataatttcttgttttagaatgcttaaagagtgttttggggcacttgttaac 33276023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 89 - 157
Target Start/End: Complemental strand, 18227181 - 18227115
Alignment:
Q  89 attgaaaatcgaaatatttgaacttttttaaaggaataattgtttattttaaaatgtttgaagagtgtt 157  Q
    |||||||||||||||||||| |||||| | || ||||||||  |||||||| ||||||| |||||||||    
T  18227181 attgaaaatcgaaatatttg-acttttatgaa-gaataattacttattttataatgtttaaagagtgtt 18227115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 65 - 121
Target Start/End: Original strand, 29487082 - 29487138
Alignment:
Q  65 tataaaaatatgtgtattagatgtattgaaaatcgaaatatttgaacttttttaaag 121  Q
    ||||||||||||||||||| ||| ||||||||| ||| ||||| |||||||||||||    
T  29487082 tataaaaatatgtgtattaaatgcattgaaaattgaactatttaaacttttttaaag 29487138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 49 - 156
Target Start/End: Complemental strand, 22209505 - 22209400
Alignment:
Q  49 ataaatggtaagtatatataaaaatatgtgtattagatgtattgaaaatcgaaatatttgaacttttttaaaggaataattgtttattttaaaatgtttg 148  Q
    |||||| |||||||| ||| ||||||| |||| |  |||| ||| ||||| |||||||| ||||||||||| |||||||||| || |||||||||| ||     
T  22209505 ataaatagtaagtatttatgaaaatatatgtaatcaatgtcttggaaatcaaaatattt-aacttttttaa-ggaataattgcttcttttaaaatgctta 22209408  T
Q  149 aagagtgt 156  Q
    ||||||||    
T  22209407 aagagtgt 22209400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 49 - 155
Target Start/End: Original strand, 20279562 - 20279666
Alignment:
Q  49 ataaatggtaagtatatataaaaatatgtgtattagatgtattgaaaatcgaaatatttgaacttttttaaaggaataattgtttattttaaaatgtttg 148  Q
    |||| |||||| ||| || ||||||  |||||||  ||||||||||||| |||||||||| ||||||| ||| ||||||||| |||||||| |||| ||     
T  20279562 ataagtggtaaatatttaaaaaaatgcgtgtatttaatgtattgaaaattgaaatatttg-actttttgaaa-gaataattgcttattttagaatgctta 20279659  T
Q  149 aagagtg 155  Q
    |||||||    
T  20279660 aagagtg 20279666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 49 - 155
Target Start/End: Original strand, 21066189 - 21066293
Alignment:
Q  49 ataaatggtaagtatatataaaaatatgtgtattagatgtattgaaaatcgaaatatttgaacttttttaaaggaataattgtttattttaaaatgtttg 148  Q
    |||| |||||| ||| || ||||||  |||||||  ||||||||||||| |||||||||| ||||||| ||| ||||||||| |||||||| |||| ||     
T  21066189 ataagtggtaaatatttaaaaaaatgcgtgtatttaatgtattgaaaattgaaatatttg-actttttgaaa-gaataattgcttattttagaatgctta 21066286  T
Q  149 aagagtg 155  Q
    |||||||    
T  21066287 aagagtg 21066293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 49 - 180
Target Start/End: Complemental strand, 37167119 - 37166990
Alignment:
Q  49 ataaatggtaagtatatataaaaatatgtgtattagatgtattgaaaatcgaaatatttgaacttttttaaaggaataattgtttattttaaaatgtttg 148  Q
    ||||||||||| |||  || |||||  |||||||  ||| |||| |||||||| ||||| |  |||||| ||| |||||||||||||||| ||||||||     
T  37167119 ataaatggtaactattcatgaaaatgcgtgtattcaatgcattggaaatcgaactatttaa--ttttttgaag-aataattgtttattttgaaatgttta 37167023  T
Q  149 aagagtgtttgg-ggcactcgttaacaagatct 180  Q
    ||||||||| ||   ||||||||||||||||||    
T  37167022 aagagtgttcggaaacactcgttaacaagatct 37166990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 113 - 177
Target Start/End: Complemental strand, 32646856 - 32646792
Alignment:
Q  113 tttttaaaggaataattgtttattttaaaatgtttgaagagtgtttggggcactcgttaacaaga 177  Q
    |||||||| |||||||||||||||||||||||||| || | |||  || ||| ||||||||||||    
T  32646856 tttttaaaagaataattgtttattttaaaatgtttaaaaaatgtccggagcattcgttaacaaga 32646792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 85 - 180
Target Start/End: Original strand, 7528270 - 7528363
Alignment:
Q  85 atgtattgaaaatcgaaatatttgaacttttttaaaggaataattgtttattttaaaatgtttgaagagtgtttggggcactcgttaacaagatct 180  Q
    |||||||| |||||||||||||||| ||||  ||||| |||||||  ||||||||||||| || || |||||   || ||||||||||||||||||    
T  7528270 atgtattggaaatcgaaatatttga-ctttcgtaaag-aataattacttattttaaaatgcttaaaaagtgtcacggacactcgttaacaagatct 7528363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 55 - 144
Target Start/End: Original strand, 1576375 - 1576462
Alignment:
Q  55 ggtaagtatatataaaaatatgtgtattagatgtattgaaaatcgaaatatttgaacttttttaaaggaataattgtttattttaaaatg 144  Q
    |||| |||| ||| |||||| |||||||  ||| |||||||||||||||||||  | |||||| |  |||||||||||||||||| ||||    
T  1576375 ggtatgtatttatgaaaatacgtgtattcaatgcattgaaaatcgaaatattt--attttttttacagaataattgtttattttagaatg 1576462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 85 - 146
Target Start/End: Original strand, 13328360 - 13328418
Alignment:
Q  85 atgtattgaaaatcgaaatatttgaacttttttaaaggaataattgtttattttaaaatgtt 146  Q
    ||||||||||||| ||||||||| ||| |||| ||  |||||||||||||||||||||||||    
T  13328360 atgtattgaaaattgaaatattt-aacattttaaa--gaataattgtttattttaaaatgtt 13328418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0192 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0192
Description:

Target: scaffold0192; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 85 - 156
Target Start/End: Original strand, 15938 - 16007
Alignment:
Q  85 atgtattgaaaatcgaaatatttgaacttttttaaaggaataattgtttattttaaaatgtttgaagagtgt 156  Q
    |||| |||||||||||||||||| ||| ||||| ||| ||||||| || |||||||||||||| ||||||||    
T  15938 atgttttgaaaatcgaaatattt-aacatttttcaag-aataattattaattttaaaatgtttaaagagtgt 16007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 65 - 107
Target Start/End: Complemental strand, 15952 - 15910
Alignment:
Q  65 tataaaaatatgtgtattagatgtattgaaaatcgaaatattt 107  Q
    ||||||||| |||||||| ||||||||||||||| ||||||||    
T  15952 tataaaaatgtgtgtatttgatgtattgaaaatcaaaatattt 15910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 68 - 155
Target Start/End: Complemental strand, 39976805 - 39976721
Alignment:
Q  68 aaaaatatgtgtattagatgtattgaaaatcgaaatatttgaacttttttaaaggaataattgtttattttaaaatgtttgaagagtg 155  Q
    ||||||| ||||| |  ||||||||||||| |||| ||||| |||||||||||  |||||||| |||||||| ||||||  |||||||    
T  39976805 aaaaatacgtgtaatcaatgtattgaaaatagaaacatttg-acttttttaaa--aataattgattattttagaatgttcaaagagtg 39976721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University