View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1345_high_84 (Length: 436)

Name: NF1345_high_84
Description: NF1345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1345_high_84
NF1345_high_84
[»] chr2 (24 HSPs)
chr2 (265-428)||(44760078-44760241)
chr2 (266-428)||(6404101-6404263)
chr2 (265-428)||(15911761-15911927)
chr2 (276-428)||(13278679-13278831)
chr2 (265-428)||(17308943-17309108)
chr2 (265-428)||(38703573-38703738)
chr2 (267-421)||(30490668-30490825)
chr2 (265-428)||(17137691-17137861)
chr2 (276-428)||(31994077-31994229)
chr2 (276-428)||(1209930-1210083)
chr2 (267-428)||(45117056-45117224)
chr2 (276-428)||(7942742-7942894)
chr2 (280-428)||(18137574-18137722)
chr2 (29-116)||(44934918-44935003)
chr2 (331-428)||(38207470-38207567)
chr2 (313-428)||(21485295-21485410)
chr2 (310-399)||(1114722-1114811)
chr2 (266-335)||(38208410-38208482)
chr2 (325-433)||(37127941-37128049)
chr2 (325-419)||(33945922-33946016)
chr2 (325-418)||(21649729-21649822)
chr2 (336-428)||(16739457-16739546)
chr2 (199-238)||(44929408-44929447)
chr2 (151-185)||(44929727-44929761)
[»] chr7 (20 HSPs)
chr7 (265-428)||(35794464-35794627)
chr7 (267-428)||(46254851-46255015)
chr7 (267-417)||(14816644-14816794)
chr7 (267-417)||(15263640-15263790)
chr7 (265-428)||(34847861-34848027)
chr7 (264-428)||(43458172-43458335)
chr7 (267-428)||(25529097-25529258)
chr7 (265-428)||(33950916-33951082)
chr7 (265-428)||(36312068-36312233)
chr7 (330-430)||(42321186-42321286)
chr7 (293-408)||(1377355-1377470)
chr7 (313-427)||(1852136-1852250)
chr7 (340-428)||(44863002-44863090)
chr7 (313-421)||(19646938-19647046)
chr7 (325-433)||(31326669-31326777)
chr7 (310-428)||(26188205-26188323)
chr7 (265-308)||(44866155-44866198)
chr7 (325-419)||(1906577-1906671)
chr7 (337-419)||(3601033-3601115)
chr7 (346-400)||(35585120-35585174)
[»] chr3 (26 HSPs)
chr3 (265-428)||(47646902-47647068)
chr3 (268-428)||(47013707-47013867)
chr3 (276-428)||(6936453-6936605)
chr3 (265-428)||(10509207-10509373)
chr3 (265-428)||(36402696-36402862)
chr3 (276-417)||(32529796-32529937)
chr3 (265-428)||(149312-149475)
chr3 (273-428)||(227615-227770)
chr3 (264-417)||(40937214-40937367)
chr3 (265-428)||(26502177-26502343)
chr3 (276-427)||(41193717-41193868)
chr3 (276-428)||(39353283-39353435)
chr3 (265-421)||(39586566-39586722)
chr3 (281-428)||(31765207-31765354)
chr3 (276-417)||(49166110-49166250)
chr3 (310-428)||(41174795-41174913)
chr3 (293-428)||(33843502-33843637)
chr3 (337-433)||(42899198-42899294)
chr3 (337-427)||(51328989-51329079)
chr3 (337-419)||(25214595-25214677)
chr3 (265-308)||(41182006-41182049)
chr3 (346-428)||(53393931-53394013)
chr3 (359-428)||(10494800-10494869)
chr3 (340-400)||(44207641-44207701)
chr3 (313-400)||(21979926-21980013)
chr3 (313-400)||(22002357-22002444)
[»] chr4 (34 HSPs)
chr4 (265-428)||(40728012-40728175)
chr4 (265-428)||(45229056-45229219)
chr4 (266-428)||(28780765-28780927)
chr4 (265-428)||(35158705-35158868)
chr4 (267-428)||(33281072-33281233)
chr4 (265-428)||(52416919-52417085)
chr4 (265-428)||(16023859-16024022)
chr4 (265-428)||(31093092-31093255)
chr4 (265-428)||(1602770-1602932)
chr4 (265-428)||(45462237-45462400)
chr4 (276-428)||(2013733-2013885)
chr4 (276-428)||(4189874-4190026)
chr4 (276-428)||(38551270-38551422)
chr4 (265-428)||(49374304-49374466)
chr4 (265-428)||(30003597-30003762)
chr4 (276-428)||(4048119-4048271)
chr4 (265-417)||(51538642-51538794)
chr4 (276-428)||(6963440-6963592)
chr4 (276-417)||(168540-168681)
chr4 (292-417)||(16451927-16452052)
chr4 (276-428)||(15542841-15542992)
chr4 (276-428)||(45924584-45924736)
chr4 (268-421)||(55136658-55136814)
chr4 (265-428)||(38218251-38218417)
chr4 (265-428)||(43841863-43842029)
chr4 (268-421)||(9036089-9036244)
chr4 (265-394)||(56463635-56463767)
chr4 (276-427)||(28310890-28311042)
chr4 (276-428)||(35319896-35320048)
chr4 (337-428)||(39807338-39807429)
chr4 (313-419)||(34953601-34953707)
chr4 (337-433)||(40602722-40602818)
chr4 (313-401)||(20516682-20516770)
chr4 (337-419)||(56084107-56084189)
[»] chr1 (29 HSPs)
chr1 (265-428)||(42882579-42882742)
chr1 (265-428)||(37952286-37952449)
chr1 (276-427)||(41091154-41091305)
chr1 (276-428)||(50261992-50262144)
chr1 (265-428)||(44496471-44496634)
chr1 (264-428)||(29961383-29961547)
chr1 (276-428)||(41900288-41900440)
chr1 (266-428)||(12700526-12700691)
chr1 (276-427)||(41086386-41086537)
chr1 (265-428)||(14587326-14587495)
chr1 (276-417)||(38860673-38860814)
chr1 (276-428)||(12528431-12528583)
chr1 (266-428)||(33801349-33801514)
chr1 (276-428)||(11952421-11952573)
chr1 (276-428)||(49851694-49851846)
chr1 (278-415)||(52632362-52632499)
chr1 (265-428)||(3517564-3517727)
chr1 (292-428)||(27216784-27216920)
chr1 (276-427)||(23984039-23984187)
chr1 (268-428)||(41723514-41723676)
chr1 (326-428)||(44757581-44757683)
chr1 (268-334)||(48964920-48964986)
chr1 (337-419)||(34549849-34549931)
chr1 (370-428)||(22858743-22858801)
chr1 (360-428)||(48964984-48965052)
chr1 (265-312)||(22858800-22858847)
chr1 (343-428)||(30518205-30518290)
chr1 (313-372)||(29913869-29913928)
chr1 (346-400)||(22334962-22335016)
[»] chr8 (22 HSPs)
chr8 (265-428)||(8239976-8240139)
chr8 (265-428)||(39318584-39318747)
chr8 (265-428)||(35684004-35684167)
chr8 (265-428)||(40105238-40105401)
chr8 (276-428)||(43098545-43098697)
chr8 (276-428)||(6347281-6347433)
chr8 (264-428)||(11076214-11076378)
chr8 (276-428)||(37098319-37098471)
chr8 (265-428)||(39260278-39260444)
chr8 (276-428)||(32337796-32337948)
chr8 (276-428)||(31701047-31701196)
chr8 (276-407)||(20091867-20091998)
chr8 (276-417)||(23144107-23144249)
chr8 (310-428)||(32947065-32947183)
chr8 (276-417)||(627371-627512)
chr8 (293-417)||(586428-586552)
chr8 (265-308)||(42131889-42131932)
chr8 (316-415)||(28284449-28284548)
chr8 (276-326)||(13546259-13546309)
chr8 (276-326)||(13678164-13678214)
chr8 (339-422)||(11457017-11457100)
chr8 (376-428)||(42131968-42132020)
[»] chr5 (24 HSPs)
chr5 (265-428)||(8734680-8734842)
chr5 (265-428)||(27114290-27114453)
chr5 (268-428)||(37012810-37012970)
chr5 (264-428)||(13822057-13822224)
chr5 (265-428)||(8197394-8197560)
chr5 (265-428)||(12785140-12785306)
chr5 (276-428)||(37030261-37030413)
chr5 (268-428)||(18808967-18809130)
chr5 (265-428)||(12723657-12723823)
chr5 (265-428)||(3556607-3556770)
chr5 (276-428)||(26279020-26279172)
chr5 (276-428)||(37883410-37883562)
chr5 (265-428)||(38679438-38679604)
chr5 (276-428)||(25977135-25977283)
chr5 (291-428)||(9715327-9715464)
chr5 (276-428)||(11719938-11720091)
chr5 (267-428)||(16513581-16513744)
chr5 (265-367)||(8299208-8299313)
chr5 (352-428)||(15858804-15858880)
chr5 (314-428)||(27495147-27495261)
chr5 (330-419)||(23252469-23252558)
chr5 (364-428)||(2606076-2606140)
chr5 (370-428)||(8300864-8300922)
chr5 (325-427)||(27690482-27690584)
[»] chr6 (10 HSPs)
chr6 (265-428)||(31722857-31723023)
chr6 (277-428)||(31318520-31318671)
chr6 (267-428)||(31271335-31271496)
chr6 (265-428)||(9304942-9305105)
chr6 (268-428)||(439017-439180)
chr6 (265-428)||(16395301-16395467)
chr6 (267-428)||(303740-303904)
chr6 (293-428)||(20818518-20818653)
chr6 (325-428)||(17519839-17519942)
chr6 (325-427)||(6837248-6837350)
[»] scaffold1301 (1 HSPs)
scaffold1301 (265-428)||(1641-1804)
[»] scaffold0054 (1 HSPs)
scaffold0054 (321-428)||(19067-19174)
[»] scaffold0160 (1 HSPs)
scaffold0160 (337-433)||(17301-17397)
[»] scaffold0048 (1 HSPs)
scaffold0048 (337-428)||(51827-51916)
[»] scaffold0210 (1 HSPs)
scaffold0210 (325-421)||(8159-8255)
[»] scaffold0001 (1 HSPs)
scaffold0001 (313-419)||(427220-427326)


Alignment Details
Target: chr2 (Bit Score: 144; Significance: 1e-75; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 265 - 428
Target Start/End: Complemental strand, 44760241 - 44760078
Alignment:
Q  265 cggaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataa 364  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  44760241 cggaaagattcagagccattaatgtgggtttggacggttacaaccactaacacgttttcattgactgtattaatgacctaggacttgttttaggctataa 44760142  T
Q  365 ataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 428  Q
    |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||    
T  44760141 ataagcttccatcttcaagatataccttcattattcacatcacctcttttcttacattttcttc 44760078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 266 - 428
Target Start/End: Complemental strand, 6404263 - 6404101
Alignment:
Q  266 ggaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaa 365  Q
    ||||||||| ||||||||||||  |||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||    
T  6404263 ggaaagatttagagccattaatgcgggtttggacggttacaaccactaacacgttttcgttgaccgtattaatgacctaggacttgttttaggctataaa 6404164  T
Q  366 taagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 428  Q
    || |||||||||||||| | |||||||||||||||||||||||| ||||||||||| ||||||    
T  6404163 taggcttccatcttcaacaaataccttcattcttcacatcacctcttttcttacattttcttc 6404101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 265 - 428
Target Start/End: Complemental strand, 15911927 - 15911761
Alignment:
Q  265 cggaaagattcagagccattaatatgggtttggacggttacaac---cactaacacgttttcattgactgtattaatgatctaggacttgttttaggcta 361  Q
    ||||||||||||||||||||||| ||||||||||||||||||||   ||||||||| |||||||||||||||||||||| ||||||||||||||||||||    
T  15911927 cggaaagattcagagccattaatgtgggtttggacggttacaacaaccactaacacattttcattgactgtattaatgacctaggacttgttttaggcta 15911828  T
Q  362 taaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 428  Q
    |||||| |||||||||||||| | ||||||| ||||||||| |||||| ||||||||||| ||||||    
T  15911827 taaataggcttccatcttcaacaaataccttgattcttcacttcacctcttttcttacattttcttc 15911761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 276 - 428
Target Start/End: Complemental strand, 13278831 - 13278679
Alignment:
Q  276 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 375  Q
    |||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||| |||||||    
T  13278831 agagccattaatgtggggttggacggttacaaccactaacacgttttcattgactgtattaatgacaaaggacttgttttaggctataaataggcttcca 13278732  T
Q  376 tcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 428  Q
    ||||||| | ||||||||||||||||| |||||| ||||||| ||| ||||||    
T  13278731 tcttcaacaaataccttcattcttcacttcacctcttttcttccattttcttc 13278679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 265 - 428
Target Start/End: Complemental strand, 17309108 - 17308943
Alignment:
Q  265 cggaaagattcagagccattaatatgggtttggacggttacaac---cactaacacgttttcattgactgtattaatgatctaggacttgttttaggcta 361  Q
    ||||||||||||||||||||||| ||||||||||||||||||||   |||||||||||||||||||||||||||||||| ||| |||||||||| |||||    
T  17309108 cggaaagattcagagccattaatgtgggtttggacggttacaacaaccactaacacgttttcattgactgtattaatgacctatgacttgttttcggcta 17309009  T
Q  362 taaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 428  Q
    |||||| |||||||||||| | | ||||||||||||||||| |||||| ||||||||||| ||||||    
T  17309008 taaataggcttccatcttc-acaaataccttcattcttcacttcacctcttttcttacattttcttc 17308943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 265 - 428
Target Start/End: Original strand, 38703573 - 38703738
Alignment:
Q  265 cggaaagattcagagccattaatatgggtttggacggttacaa---ccactaacacgttttcattgactgtattaatgatctaggacttgttttaggcta 361  Q
    ||||||||||||||| ||||||| |||||||||||||||||||   ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||    
T  38703573 cggaaagattcagagtcattaatgtgggtttggacggttacaacaaccactaacacgttttcattgactgtattaatgacctaggacttcttttaggcta 38703672  T
Q  362 taaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 428  Q
    |||||  |||||||||||||| | ||||||| ||||||||| |||||| ||||||||||| ||||||    
T  38703673 taaat-ggcttccatcttcaacaaatacctttattcttcacttcacctcttttcttacattttcttc 38703738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 267 - 421
Target Start/End: Original strand, 30490668 - 30490825
Alignment:
Q  267 gaaagattcagagccattaatatgggtttggacggttacaa---ccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctata 363  Q
    ||||||||||||||||||||| |||||||||||||||||||   ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||    
T  30490668 gaaagattcagagccattaatgtgggtttggacggttacaacaaccactaacacgttttcattgactgtattaatgacctaggacttgttttaggccata 30490767  T
Q  364 aataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacat 421  Q
    |||| |||| ||||||||| | |||||| |||||||||| ||| || |||||||||||    
T  30490768 aataggctttcatcttcaacaaatacctacattcttcacctcagctcttttcttacat 30490825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 265 - 428
Target Start/End: Original strand, 17137691 - 17137861
Alignment:
Q  265 cggaaagattcagagccattaatatgggtttggacggttacaa---ccactaacacgttttcattgactgtattaatgatctaggacttgttttaggcta 361  Q
    |||||| ||| |||||||||||| |||||||||||||||||||   ||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  17137691 cggaaacatttagagccattaatgtgggtttggacggttacaacaaccactaacacgttttcattgactgtattaatgacctaggacttgttttaggcta 17137790  T
Q  362 taaataa----gcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 428  Q
    |||||||    ||||| |||||||| | ||||||||||||||||| |||||| ||||||| ||| ||||||    
T  17137791 taaataaacaggcttctatcttcaacaaataccttcattcttcacttcacctcttttcttccattttcttc 17137861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 276 - 428
Target Start/End: Original strand, 31994077 - 31994229
Alignment:
Q  276 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 375  Q
    |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| | |||||    
T  31994077 agagccattaatgtaggtttggacggttacaaccactaacacgttttcattgactgtagtaatgacctaggacttgttttaggctataaataggtttcca 31994176  T
Q  376 tcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 428  Q
    | ||||| | ||| |||||||| |||| |||||| ||||||| ||| ||||||    
T  31994177 tattcaacaaatatcttcattcatcacttcacctcttttcttccattttcttc 31994229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 276 - 428
Target Start/End: Original strand, 1209930 - 1210083
Alignment:
Q  276 agagccattaa-tatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcc 374  Q
    ||||||||||| | |||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||| ||||||    
T  1209930 agagccattaaatgtgggtttggacggttacaaccactaacacgttttcattgactttattaatgacctaggacttgttttaagctataaataggcttcc 1210029  T
Q  375 atcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 428  Q
    |||||| | | |||||| |||||||||| |||| | ||||||| ||| ||||||    
T  1210030 atcttcgacaaatacctgcattcttcacttcacatcttttcttccattttcttc 1210083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 267 - 428
Target Start/End: Complemental strand, 45117224 - 45117056
Alignment:
Q  267 gaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaat 366  Q
    ||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||    
T  45117224 gaaagattcagagccgttaatgtggatttggacggttacaaccactaacacgttttcattgactctattaatgacctaagacttgttttaggctataaat 45117125  T
Q  367 aagcttccat-------cttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 428  Q
    | ||||||||       |||||| | |||| |||||||||||| |||||| ||||||| ||| ||||||    
T  45117124 aggcttccatcttccatcttcaacaaatactttcattcttcacttcacctcttttcttccattttcttc 45117056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 276 - 428
Target Start/End: Original strand, 7942742 - 7942894
Alignment:
Q  276 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 375  Q
    |||||||||||| | |||||||||||||||||||||||||| |||||||||||||||| ||| || ||||||||||||||| |||||||| |  ||||||    
T  7942742 agagccattaatgtaggtttggacggttacaaccactaacatgttttcattgactgtagtaaggacctaggacttgttttatgctataaacagacttcca 7942841  T
Q  376 tcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 428  Q
    ||||||| | ||||||||||| ||||| |||||| ||||||| ||| ||||||    
T  7942842 tcttcaacaaataccttcattgttcacttcacctcttttcttccattttcttc 7942894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 280 - 428
Target Start/End: Complemental strand, 18137722 - 18137574
Alignment:
Q  280 ccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttccatctt 379  Q
    |||||||| | |||| ||||||||||||||||||||||||||||||||| |||| |||||| ||||||||| |||||||||||||||| ||||  |||||    
T  18137722 ccattaatgtaggttgggacggttacaaccactaacacgttttcattgattgtactaatgacctaggacttattttaggctataaataggcttttatctt 18137623  T
Q  380 caagatataccttcattcttcacatcaccttttttcttacatattcttc 428  Q
    ||| | ||||||||||||||||| ||| |||||||||| ||| ||||||    
T  18137622 caacaaataccttcattcttcacttcatcttttttcttccattttcttc 18137574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 29 - 116
Target Start/End: Complemental strand, 44935003 - 44934918
Alignment:
Q  29 atgtcattcccggtggaactcatgtatgtagctaaagaagtctattctagagctatacaaaaccaaatgaaattcaagccacagattc 116  Q
    |||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44935003 atgtcattcccggtggaacc--tgtatgtagctaaagaagtctattctagagctatacaaaaccaaatgaaattcaagccacagattc 44934918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 331 - 428
Target Start/End: Complemental strand, 38207567 - 38207470
Alignment:
Q  331 gtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 428  Q
    |||||||||| |||||||||||||||||||||||||| |||| ||||||||| | ||||||||||||||||| |||||| ||||||||||| ||||||    
T  38207567 gtattaatgacctaggacttgttttaggctataaatatgcttacatcttcaacaaataccttcattcttcacttcacctcttttcttacattttcttc 38207470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 313 - 428
Target Start/End: Original strand, 21485295 - 21485410
Alignment:
Q  313 aacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcacctttt 412  Q
    |||||||||| ||||| |||| | |||| ||||||||||||||||||||||||||||||| ||| ||||| | || | |||||||||||| |||||| ||    
T  21485295 aacacgtttttattgattgtacttatgacctaggacttgttttaggctataaataagctttcatattcaacaaattctttcattcttcacttcacctctt 21485394  T
Q  413 ttcttacatattcttc 428  Q
    ||||||||| ||||||    
T  21485395 ttcttacattttcttc 21485410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 310 - 399
Target Start/End: Complemental strand, 1114811 - 1114722
Alignment:
Q  310 actaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattctt 399  Q
    ||||| ||||||||||||||| || |||||| ||||||||||||||| |||||||||| |||| ||||||||| | ||||||||||||||    
T  1114811 actaatacgttttcattgactatactaatgacctaggacttgttttaagctataaataggctttcatcttcaacaaataccttcattctt 1114722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 266 - 335
Target Start/End: Complemental strand, 38208482 - 38208410
Alignment:
Q  266 ggaaagattcagagccattaatatgggtttggacggtt---acaaccactaacacgttttcattgactgtatt 335  Q
    |||||||||||||||||||||| |||||||||||||||   |||||||||||||||||||||||||| |||||    
T  38208482 ggaaagattcagagccattaatgtgggtttggacggttgcaacaaccactaacacgttttcattgaccgtatt 38208410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 325 - 433
Target Start/End: Original strand, 37127941 - 37128049
Alignment:
Q  325 ttgactgtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatatt 424  Q
    ||||||||||| || || |||||||||||||||||||||||||||||| ||| || || | || | |||||||||||| |||||| ||||||||| | ||    
T  37127941 ttgactgtatttatcatataggacttgttttaggctataaataagcttgcatttttaacaaattctttcattcttcacttcacctattttcttacttttt 37128040  T
Q  425 cttcgacat 433  Q
    |||| ||||    
T  37128041 cttcaacat 37128049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 325 - 419
Target Start/End: Complemental strand, 33946016 - 33945922
Alignment:
Q  325 ttgactgtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttac 419  Q
    ||||||||| | ||||||||||||||||||||||||||| ||| | || ||||||||| | || |||||||||||||| |||||  |||||||||    
T  33946016 ttgactgtagttatgatctaggacttgttttaggctatatataggtttgcatcttcaacaaattccttcattcttcacttcaccacttttcttac 33945922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 325 - 418
Target Start/End: Original strand, 21649729 - 21649822
Alignment:
Q  325 ttgactgtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcaccttttttctta 418  Q
    ||||||||| | || ||||||||||||||| ||||||||||||  ||||||||||||  | ||  ||||||||||||| |||||||||||||||    
T  21649729 ttgactgtagttataatctaggacttgtttaaggctataaatagtcttccatcttcatcaaatttcttcattcttcacttcaccttttttctta 21649822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 336 - 428
Target Start/End: Original strand, 16739457 - 16739546
Alignment:
Q  336 aatgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 428  Q
    ||||| |||||||||||||||||||||||| | ||||  |||||||| || | |||| |||||||   |||||| ||||||||||| ||||||    
T  16739457 aatgacctaggacttgttttaggctataaaaaggcttggatcttcaacattttcctttattcttc---tcacctcttttcttacattttcttc 16739546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 199 - 238
Target Start/End: Complemental strand, 44929447 - 44929408
Alignment:
Q  199 aaatgatgtgtccaaatacttatgaccagttaggactttc 238  Q
    ||||||||||||||||||||| ||| ||||||||||||||    
T  44929447 aaatgatgtgtccaaatacttgtgatcagttaggactttc 44929408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 151 - 185
Target Start/End: Complemental strand, 44929761 - 44929727
Alignment:
Q  151 atattgctttctttttgtaagtaaattgatataga 185  Q
    |||||||||||||||||||||||||||||| ||||    
T  44929761 atattgctttctttttgtaagtaaattgatttaga 44929727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 124; Significance: 1e-63; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 265 - 428
Target Start/End: Complemental strand, 35794627 - 35794464
Alignment:
Q  265 cggaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataa 364  Q
    |||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  35794627 cggaaagatttagagccattaatatggatttggacggttacaaccactaacacgttttcattgactgtattaatgacctatgacttgttttaggctataa 35794528  T
Q  365 ataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 428  Q
    ||| |||||||||||||| | ||||||||||||||||||||| || ||||||||||| ||||||    
T  35794527 ataggcttccatcttcaacaaataccttcattcttcacatcagctcttttcttacattttcttc 35794464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 267 - 428
Target Start/End: Complemental strand, 46255015 - 46254851
Alignment:
Q  267 gaaagattcagagccattaatatgggtttggacggttacaac---cactaacacgttttcattgactgtattaatgatctaggacttgttttaggctata 363  Q
    ||||||||||||||||||||| ||||||||||||||||||||   |||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  46255015 gaaagattcagagccattaatgtgggtttggacggttacaacaaccactaacacgttttcattgactgtattaatgacctaggacttgttttaggctata 46254916  T
Q  364 aataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 428  Q
    |||| |||||||||||||| | ||||||||||||||||| |||||| ||||||||||| ||||||    
T  46254915 aataggcttccatcttcaacaaataccttcattcttcacttcacctcttttcttacattttcttc 46254851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 267 - 417
Target Start/End: Original strand, 14816644 - 14816794
Alignment:
Q  267 gaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaat 366  Q
    ||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||    
T  14816644 gaaagatccagagccattaatgtgggtttggacggttacaaccactaacacgttttcattgactgtattaatgacctaggacttgttttagcctataaat 14816743  T
Q  367 aagcttccatcttcaagatataccttcattcttcacatcaccttttttctt 417  Q
    | |||||||||||||| | ||||||||||||||||| |||||| |||||||    
T  14816744 aggcttccatcttcaacaaataccttcattcttcacttcacctcttttctt 14816794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 267 - 417
Target Start/End: Original strand, 15263640 - 15263790
Alignment:
Q  267 gaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaat 366  Q
    ||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||    
T  15263640 gaaagatccagagccattaatgtgggtttggacggttacaaccactaacacgttttcattgactgtattaatgacctaggacttgttttagcctataaat 15263739  T
Q  367 aagcttccatcttcaagatataccttcattcttcacatcaccttttttctt 417  Q
    | |||||||||||||| | ||||||||||||||||| |||||| |||||||    
T  15263740 aggcttccatcttcaacaaataccttcattcttcacttcacctcttttctt 15263790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 265 - 428
Target Start/End: Original strand, 34847861 - 34848027
Alignment:
Q  265 cggaaagattcagagccattaatatgggtttggacggttacaa---ccactaacacgttttcattgactgtattaatgatctaggacttgttttaggcta 361  Q
    ||||||||||||||||||||||| ||||||||||| |||||||   ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  34847861 cggaaagattcagagccattaatgtgggtttggacagttacaacaaccactaacacgttttcattgactgtattaatgacctaggacttgttttatgcta 34847960  T
Q  362 taaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 428  Q
    |||||| |||||||||||||| | ||||||||||||||||| |||||| ||||||||||| ||||||    
T  34847961 taaataggcttccatcttcaacagataccttcattcttcacttcacctcttttcttacattttcttc 34848027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 264 - 428
Target Start/End: Complemental strand, 43458335 - 43458172
Alignment:
Q  264 tcggaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctata 363  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  43458335 tcggaaagattcagagccattaatgtgggtttggacggttacaaccactaacacgttttcattgactgtattaatgacataggacttgttttaggctata 43458236  T
Q  364 aataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 428  Q
    |||| || | ||||||||| | ||||||||||||||||| |||||| ||||||| ||| ||||||    
T  43458235 aataggc-tacatcttcaacaaataccttcattcttcacttcacctcttttcttccattttcttc 43458172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 267 - 428
Target Start/End: Original strand, 25529097 - 25529258
Alignment:
Q  267 gaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaat 366  Q
    ||||||||||||| ||||||| |||||||||||||||||||||||| |||||| |||||||| ||||||||||| |||||||||||||||||||||||||    
T  25529097 gaaagattcagagtcattaatgtgggtttggacggttacaaccactgacacgtattcattgattgtattaatgacctaggacttgttttaggctataaat 25529196  T
Q  367 aagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 428  Q
    | |||||||||||||| | ||||||||||||||||| |||||| ||||||| ||| ||||||    
T  25529197 aggcttccatcttcaacaaataccttcattcttcacttcacctcttttcttccattttcttc 25529258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 265 - 428
Target Start/End: Complemental strand, 33951082 - 33950916
Alignment:
Q  265 cggaaagattcagagccattaatatgggtttggacggttacaac---cactaacacgttttcattgactgtattaatgatctaggacttgttttaggcta 361  Q
    ||||| ||||||||||||||||| |||||||||| |||||||||   |||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  33951082 cggaacgattcagagccattaatgtgggtttggatggttacaacaaccactaacacgttttcattgactgtattaatgacctaggacttgttttaggcta 33950983  T
Q  362 taaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 428  Q
    |||||||| ||| |||||||| | ||||||| ||||||||| | |||| ||||||||||| ||||||    
T  33950982 taaataagtttctatcttcaacaaatacctttattcttcactttacctcttttcttacattttcttc 33950916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 265 - 428
Target Start/End: Original strand, 36312068 - 36312233
Alignment:
Q  265 cggaaagattcagagccattaatatgggtttggacggttacaa---ccactaacacgttttcattgactgtattaatgatctaggacttgttttaggcta 361  Q
    ||||||||||||||||||||||| |||||||||||||||||||   ||||||||||||||| ||||||||||||||||| |||| |||||||||||||||    
T  36312068 cggaaagattcagagccattaatgtgggtttggacggttacaacaaccactaacacgtttttattgactgtattaatgacctagaacttgttttaggcta 36312167  T
Q  362 taaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 428  Q
    | ||||  ||||||||||||| | ||| ||||||| ||||| |||||| ||||||||||| ||||||    
T  36312168 t-aatagacttccatcttcaacaaatatcttcattgttcacttcacctcttttcttacattttcttc 36312233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 330 - 430
Target Start/End: Original strand, 42321186 - 42321286
Alignment:
Q  330 tgtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttcg 429  Q
    ||||||||| | ||| ||||||||||||| |||||||| |||||||||||||| | ||| ||||||||||||| |||||| ||||||| ||| |||||||    
T  42321186 tgtattaataacctatgacttgttttaggttataaataggcttccatcttcaacaaatatcttcattcttcacttcacctcttttcttccattttcttcg 42321285  T
Q  430 a 430  Q
    |    
T  42321286 a 42321286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 293 - 408
Target Start/End: Complemental strand, 1377470 - 1377355
Alignment:
Q  293 tttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatatacctt 392  Q
    |||||| |||||  ||||| ||||||||||||||||||||| | ||||  || ||||| |||||||||||||||| |||||||||||||| | ||  |||    
T  1377470 tttggatggttagcaccacaaacacgttttcattgactgtacttatgacatatgacttattttaggctataaataggcttccatcttcaacaaatttctt 1377371  T
Q  393 cattcttcacatcacc 408  Q
    |||||||||| |||||    
T  1377370 cattcttcacttcacc 1377355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 313 - 427
Target Start/End: Complemental strand, 1852250 - 1852136
Alignment:
Q  313 aacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcacctttt 412  Q
    |||||||||||||||| |||| | |||| |||||  ||||||||||||||| |||||||| |||||| || | |  |||||||||||||| |||||| ||    
T  1852250 aacacgttttcattgattgtacttatgacctaggtattgttttaggctatatataagcttgcatcttgaacaaagtccttcattcttcacttcacctctt 1852151  T
Q  413 ttcttacatattctt 427  Q
    ||||||||| |||||    
T  1852150 ttcttacattttctt 1852136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 340 - 428
Target Start/End: Complemental strand, 44863090 - 44863002
Alignment:
Q  340 atctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 428  Q
    ||||||||||||||||| |||||||||| ||||| ||||| || | ||||||||||||||||| |||||| ||||||| ||| ||||||    
T  44863090 atctaggacttgttttaagctataaatatgcttcaatcttgaacaaataccttcattcttcacttcacctcttttcttccattttcttc 44863002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 313 - 421
Target Start/End: Complemental strand, 19647046 - 19646938
Alignment:
Q  313 aacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcacctttt 412  Q
    ||||||||||  ||||||||| | ||||||||||||| |||| || ||||||||| ||||  |||||||| |  | ||||||||||| || |||||| ||    
T  19647046 aacacgttttacttgactgtaattatgatctaggactggtttaagactataaatatgcttgaatcttcaacaatttccttcattctttacttcacctctt 19646947  T
Q  413 ttcttacat 421  Q
    |||||||||    
T  19646946 ttcttacat 19646938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 325 - 433
Target Start/End: Original strand, 31326669 - 31326777
Alignment:
Q  325 ttgactgtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatatt 424  Q
    ||||||||| | ||||| ||||||||||||||  ||||||||| | || ||||||||| | ||  ||||||||||||| |||||| ||||||||| | ||    
T  31326669 ttgactgtaattatgatttaggacttgttttatactataaataggtttgcatcttcaacaaatttcttcattcttcacttcacctcttttcttacttttt 31326768  T
Q  425 cttcgacat 433  Q
    |||| ||||    
T  31326769 cttcaacat 31326777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 310 - 428
Target Start/End: Original strand, 26188205 - 26188323
Alignment:
Q  310 actaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcacct 409  Q
    ||||||| |||||  |||| |||| | |||| ||||||| ||||||||| |||||||| || | ||| ||||| | || |||||||||||||| ||||||    
T  26188205 actaacatgttttgcttgattgtacttatgacctaggacatgttttaggttataaataggcatgcatgttcaacaaattccttcattcttcacttcacct 26188304  T
Q  410 tttttcttacatattcttc 428  Q
    |||| ||| ||| ||||||    
T  26188305 ttttactttcattttcttc 26188323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 265 - 308
Target Start/End: Complemental strand, 44866198 - 44866155
Alignment:
Q  265 cggaaagattcagagccattaatatgggtttggacggttacaac 308  Q
    ||||||||||||||||||||| | ||||||||||||||||||||    
T  44866198 cggaaagattcagagccattattgtgggtttggacggttacaac 44866155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 325 - 419
Target Start/End: Original strand, 1906577 - 1906671
Alignment:
Q  325 ttgactgtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttac 419  Q
    ||||||||| |  ||||||||||| ||||| || ||||||||| ||||  |||||||| |  | ||| |||||||||| |||||| |||||||||    
T  1906577 ttgactgtagttgtgatctaggacatgtttaagactataaataggcttgaatcttcaacaagttcctgcattcttcacttcacctcttttcttac 1906671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 419
Target Start/End: Original strand, 3601033 - 3601115
Alignment:
Q  337 atgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttac 419  Q
    |||||| |||| |||||||||||||||||||  ||| ||||||||| | ||  |||| |||||||| ||| || |||||||||    
T  3601033 atgatcaaggatttgttttaggctataaatagacttgcatcttcaacaaatttcttcgttcttcacttcaactcttttcttac 3601115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 346 - 400
Target Start/End: Original strand, 35585120 - 35585174
Alignment:
Q  346 gacttgttttaggctataaataagcttccatcttcaagatataccttcattcttc 400  Q
    |||||||||||||||||||| ||||||  |||||||| || | ||||||||||||    
T  35585120 gacttgttttaggctataaaaaagcttggatcttcaacattttccttcattcttc 35585174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 121; Significance: 8e-62; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 265 - 428
Target Start/End: Complemental strand, 47647068 - 47646902
Alignment:
Q  265 cggaaagattcagagccattaatatgggtttggacggttacaac---cactaacacgttttcattgactgtattaatgatctaggacttgttttaggcta 361  Q
    ||||||||||||||||||||||| ||||||||||||||||||||   |||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  47647068 cggaaagattcagagccattaatgtgggtttggacggttacaacaaccactaacacgttttcattgactgtattaatgacctaggacttgttttaggcta 47646969  T
Q  362 taaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 428  Q
    |||||| |||||||||||||| | ||||||||||||||||| |||||| ||||||||||| ||||||    
T  47646968 taaataggcttccatcttcaacaaataccttcattcttcacttcacctcttttcttacattttcttc 47646902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 268 - 428
Target Start/End: Original strand, 47013707 - 47013867
Alignment:
Q  268 aaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaata 367  Q
    |||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||    
T  47013707 aaagattcagagccattaatgtgggtttggatggttacaaccactaacacgttttcattgaccgtattaatgacctaggacttgttttaggctataaata 47013806  T
Q  368 agcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 428  Q
     | |||||||||||| | ||||||||||||||||| |||||| ||||||||||| ||||||    
T  47013807 ggtttccatcttcaacaaataccttcattcttcacttcacctcttttcttacattttcttc 47013867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 276 - 428
Target Start/End: Complemental strand, 6936605 - 6936453
Alignment:
Q  276 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 375  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| |||||||    
T  6936605 agagccattaatatgggtttgggcggttacaaccactaacacgttttcattgactgtattaatgacttaggacttgttttaggctataaataggcttcca 6936506  T
Q  376 tcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 428  Q
    ||||||| | |||| |||||||||||| |||||||||||||| ||| ||||||    
T  6936505 tcttcaacaaatacattcattcttcacttcaccttttttctttcattttcttc 6936453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 265 - 428
Target Start/End: Original strand, 10509207 - 10509373
Alignment:
Q  265 cggaaagattcagagccattaatatgggtttggacggttacaa---ccactaacacgttttcattgactgtattaatgatctaggacttgttttaggcta 361  Q
    ||||||||||||||||||||||| |||||||||||||||||||   ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||    
T  10509207 cggaaagattcagagccattaatgtgggtttggacggttacaacaaccactaacacgttttcattgactgtattaatgacctaggacttcttttaggcta 10509306  T
Q  362 taaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 428  Q
    |||||| ||||| |||||||| | ||||||||||||||||| |||||| ||||||||||| ||||||    
T  10509307 taaataggcttctatcttcaacaaataccttcattcttcacttcacctcttttcttacattttcttc 10509373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 265 - 428
Target Start/End: Original strand, 36402696 - 36402862
Alignment:
Q  265 cggaaagattcagagccattaatatgggtttggacggttacaa---ccactaacacgttttcattgactgtattaatgatctaggacttgttttaggcta 361  Q
    ||||||||||||||| ||||||| |||||||||||||||||||   ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||    
T  36402696 cggaaagattcagagtcattaatgtgggtttggacggttacaacaaccactaacacgttttcattgactgtattaatgacctaggacttgttttaggtta 36402795  T
Q  362 taaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 428  Q
    |||||| |||||||||||||| | ||||||||||||||||| |||||| ||||||||||| ||||||    
T  36402796 taaataggcttccatcttcaacaaataccttcattcttcacttcacctcttttcttacattttcttc 36402862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 276 - 417
Target Start/End: Complemental strand, 32529937 - 32529796
Alignment:
Q  276 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 375  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| |||||||    
T  32529937 agagccattaatgtgggtttggacggttacaaccactaacacgttttcattaactgtattaatgacctaggacttgttttaggctataaataggcttcca 32529838  T
Q  376 tcttcaagatataccttcattcttcacatcaccttttttctt 417  Q
    ||||||| | ||||||||||||||||| |||||| |||||||    
T  32529837 tcttcaacaaataccttcattcttcacttcacctcttttctt 32529796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 265 - 428
Target Start/End: Complemental strand, 149475 - 149312
Alignment:
Q  265 cggaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataa 364  Q
    ||||||||||||||| ||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  149475 cggaaagattcagagtcattaacgtgggtttggacggttacaaccactaacacgttttcattgactgtattaatgacctatgacttgttttaggctataa 149376  T
Q  365 ataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 428  Q
    ||| |||||||||||||| | |||| | |||||||||| |||||| ||||||| ||| ||||||    
T  149375 ataggcttccatcttcaacaaatacttacattcttcacttcacctcttttcttccattttcttc 149312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 273 - 428
Target Start/End: Complemental strand, 227770 - 227615
Alignment:
Q  273 ttcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagctt 372  Q
    |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  |||    
T  227770 ttcagagccattgatgtgggtttggacggttacaaccactaacacgttttcattgactgtattaatgacctaggacttgttttaggctataaatagactt 227671  T
Q  373 ccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 428  Q
    ||||||| || | ||||||||||||||||| |||||| ||||||| ||| ||||||    
T  227670 ccatctttaacaaataccttcattcttcacttcacctcttttcttccattttcttc 227615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 264 - 417
Target Start/End: Complemental strand, 40937367 - 40937214
Alignment:
Q  264 tcggaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctata 363  Q
    |||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||    
T  40937367 tcggaaagattcagagtctttaatgtgggtttggacggttacaaccactaacacgttttcattgactgtattaatgacctaggatttgttttaggctata 40937268  T
Q  364 aataagcttccatcttcaagatataccttcattcttcacatcaccttttttctt 417  Q
    |||| |||||||||||||| | |||| |||||| ||||| |||||| |||||||    
T  40937267 aataggcttccatcttcaacaaatactttcatttttcacttcacctcttttctt 40937214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 265 - 428
Target Start/End: Original strand, 26502177 - 26502343
Alignment:
Q  265 cggaaagattcagagccattaatatgggtttggacggttacaa---ccactaacacgttttcattgactgtattaatgatctaggacttgttttaggcta 361  Q
    ||||||||||||||||||||||| ||||||||||| |||||||   ||||||||||||||||||||||||||||||||| |||||||||||||||| |||    
T  26502177 cggaaagattcagagccattaatgtgggtttggacagttacaacaaccactaacacgttttcattgactgtattaatgacctaggacttgttttagacta 26502276  T
Q  362 taaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 428  Q
    |||||| |||||||||||||| | |||||| |||||||||| |||||| ||||||| ||| ||||||    
T  26502277 taaataggcttccatcttcaacaaatacctacattcttcacttcacctcttttcttgcattttcttc 26502343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 276 - 427
Target Start/End: Original strand, 41193717 - 41193868
Alignment:
Q  276 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 375  Q
    ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |||||||    
T  41193717 agagctattaatgtgggtttggacggttacaaccactaacacgttttcattgactgtagtaatgacctaggacttgttttaggctataaatatgcttcca 41193816  T
Q  376 tcttcaagatataccttcattcttcacatcaccttttttcttacatattctt 427  Q
    ||||||| | ||||||||||||| ||| |||||| ||||||| ||| |||||    
T  41193817 tcttcaacaaataccttcattctccacttcacctcttttcttccattttctt 41193868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 276 - 428
Target Start/End: Complemental strand, 39353435 - 39353283
Alignment:
Q  276 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 375  Q
    |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |||||||    
T  39353435 agagtcattaatgtgggtttggacggttacaaccactaacacgttttcattgactgtattaatgacctaggatttgttttaggctataaataggcttcca 39353336  T
Q  376 tcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 428  Q
    ||||||| | |||| |||||||||||| || ||| ||||||| ||| ||||||    
T  39353335 tcttcaacagatacattcattcttcacttcgcctcttttcttccattttcttc 39353283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 265 - 421
Target Start/End: Complemental strand, 39586722 - 39586566
Alignment:
Q  265 cggaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataa 364  Q
    ||||||||||||||||||||||| |||||||||| ||||||||||||||||||| ||||||||||||||||||||| |||||| |||||||| |||||||    
T  39586722 cggaaagattcagagccattaatgtgggtttggatggttacaaccactaacacggtttcattgactgtattaatgacctaggatttgttttaagctataa 39586623  T
Q  365 ataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacat 421  Q
    ||| |||||||| ||||| | |||| |||||||||||  |||||| |||||||||||    
T  39586622 ataggcttccattttcaacaaatactttcattcttcaattcacctattttcttacat 39586566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 281 - 428
Target Start/End: Original strand, 31765207 - 31765354
Alignment:
Q  281 cattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttccatcttc 380  Q
    ||||||| | |||||| ||||||||||||||||||||||||| |||||||| | |||||| ||||||||||||||||| |||||||| ||||||||||||    
T  31765207 cattaatgtaggtttgaacggttacaaccactaacacgtttttattgactgcactaatgacctaggacttgttttaggttataaataggcttccatcttc 31765306  T
Q  381 aagatataccttcattcttcacatcaccttttttcttacatattcttc 428  Q
    || | ||||||||||||||||| ||||||| |||||| ||| ||||||    
T  31765307 aacaaataccttcattcttcacttcaccttctttcttccatcttcttc 31765354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 276 - 417
Target Start/End: Original strand, 49166110 - 49166250
Alignment:
Q  276 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 375  Q
    |||| ||||||| | |||| ||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||    
T  49166110 agagtcattaatgtaggttaggacggttacaaccactaacatgttttcattgactgtagtaatgatctaggacttgttttaggctataaataggcttcca 49166209  T
Q  376 tcttcaagatataccttcattcttcacatcaccttttttctt 417  Q
    ||||| | | ||||||||||||||||| |||| | |||||||    
T  49166210 tcttc-acaaataccttcattcttcacttcacatcttttctt 49166250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 310 - 428
Target Start/End: Complemental strand, 41174913 - 41174795
Alignment:
Q  310 actaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcacct 409  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||| |||| |    
T  41174913 actaacacgttttcattgactgtattaatgacataggacttgttttaggctataaataggcttccatcttcaacaaataccttcattcttcacttcacat 41174814  T
Q  410 tttttcttacatattcttc 428  Q
     ||||||||||| ||||||    
T  41174813 cttttcttacattttcttc 41174795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 293 - 428
Target Start/End: Complemental strand, 33843637 - 33843502
Alignment:
Q  293 tttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatatacctt 392  Q
    ||||||| ||||  ||||| ||||||||||  ||||||||  | ||||||||||||||||||||||||||||||| | |||||||||||| | || ||||    
T  33843637 tttggacagttagcaccacaaacacgttttatttgactgtggttatgatctaggacttgttttaggctataaataggtttccatcttcaacaaattcctt 33843538  T
Q  393 cattcttcacatcaccttttttcttacatattcttc 428  Q
    |||||||||| |||||| |||| |||||| ||||||    
T  33843537 cattcttcacttcacctctttttttacattttcttc 33843502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 337 - 433
Target Start/End: Complemental strand, 42899294 - 42899198
Alignment:
Q  337 atgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttcgacat 433  Q
    ||||| || |||||||||||||||||||||| |||| ||| ||||| | || |||||||||||||| |||||||||||||||||| |||||| ||||    
T  42899294 atgatatatgacttgttttaggctataaataggcttgcattttcaacaaattccttcattcttcacttcaccttttttcttacattttcttcaacat 42899198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 337 - 427
Target Start/End: Original strand, 51328989 - 51329079
Alignment:
Q  337 atgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattctt 427  Q
    |||| |||||||||||||||||||||||||| |||| ||| ||||| | || |||||||||||||| |||||| |||| |||||| |||||    
T  51328989 atgaactaggacttgttttaggctataaataggcttgcatgttcaacaaattccttcattcttcacttcacctcttttattacattttctt 51329079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 337 - 419
Target Start/End: Original strand, 25214595 - 25214677
Alignment:
Q  337 atgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttac 419  Q
    |||||||||||||||||||||||||||||||  ||| |||||| || | || |||||||||||||  |||||  |||||||||    
T  25214595 atgatctaggacttgttttaggctataaatagacttacatctttaacaaattccttcattcttcaattcaccacttttcttac 25214677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 265 - 308
Target Start/End: Complemental strand, 41182049 - 41182006
Alignment:
Q  265 cggaaagattcagagccattaatatgggtttggacggttacaac 308  Q
    ||||||||||||||||||||||| |||||||||| |||||||||    
T  41182049 cggaaagattcagagccattaatgtgggtttggatggttacaac 41182006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 346 - 428
Target Start/End: Complemental strand, 53394013 - 53393931
Alignment:
Q  346 gacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 428  Q
    |||||||||||||||||||||| |||| ||| ||||| | || |||||||||||||| | | || ||||||| ||| ||||||    
T  53394013 gacttgttttaggctataaataggcttgcatgttcaacaaattccttcattcttcactttatctcttttctttcattttcttc 53393931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 359 - 428
Target Start/End: Original strand, 10494800 - 10494869
Alignment:
Q  359 ctataaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 428  Q
    ||||||||| ||||  |||||||| |  | |||||||||||||| |||||||||||||||||| ||||||    
T  10494800 ctataaatatgcttagatcttcaacaatttccttcattcttcacttcaccttttttcttacattttcttc 10494869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 340 - 400
Target Start/End: Original strand, 44207641 - 44207701
Alignment:
Q  340 atctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttc 400  Q
    ||||| |||||||||||||||||||| ||||||  |||||||| || | ||||||||||||    
T  44207641 atctatgacttgttttaggctataaaaaagcttggatcttcaacattttccttcattcttc 44207701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 313 - 400
Target Start/End: Original strand, 21979926 - 21980013
Alignment:
Q  313 aacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttc 400  Q
    ||||||||||  ||||||||| | | || ||| ||||| ||| |||||||||| ||||||  ||||||||||| | ||||||||||||    
T  21979926 aacacgttttatttgactgtaattaagacctatgacttatttaaggctataaaaaagcttggatcttcaagattttccttcattcttc 21980013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 313 - 400
Target Start/End: Original strand, 22002357 - 22002444
Alignment:
Q  313 aacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttc 400  Q
    ||||||||||  ||||||||| | | || ||| ||||| ||| |||||||||| ||||||  ||||||||||| | ||||||||||||    
T  22002357 aacacgttttatttgactgtaattaagacctatgacttatttaaggctataaaaaagcttggatcttcaagattttccttcattcttc 22002444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 120; Significance: 3e-61; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 265 - 428
Target Start/End: Complemental strand, 40728175 - 40728012
Alignment:
Q  265 cggaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataa 364  Q
    |||||||||||| |||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  40728175 cggaaagattcatagccattaatgtgggtatggatggttacaaccactaacacgttttcattgactgtattaatgacctaggacttgttttaggctataa 40728076  T
Q  365 ataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 428  Q
    ||| |||| ||||||||| | |||||||||||||||||||||||| ||||||||||| ||||||    
T  40728075 ataggctttcatcttcaacaaataccttcattcttcacatcacctcttttcttacattttcttc 40728012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 265 - 428
Target Start/End: Complemental strand, 45229219 - 45229056
Alignment:
Q  265 cggaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataa 364  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||    
T  45229219 cggaaagattcagagccattaatgtgggtttggacggttacaaccactaacacgttttcatggactgtattaatgacctaggacttgttttaggctataa 45229120  T
Q  365 ataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 428  Q
    ||| | |||||||||||| | |||  ||||||||||||||||||| ||||||||||| ||||||    
T  45229119 ataggattccatcttcaacaaatatattcattcttcacatcacctcttttcttacattttcttc 45229056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 266 - 428
Target Start/End: Original strand, 28780765 - 28780927
Alignment:
Q  266 ggaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaa 365  Q
    |||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||  || ||||||||||||||||||||    
T  28780765 ggaaagattcagagccattaatgtggttttgggcggttacaaccactaacacgttttcattgactgtattaatgacatatgacttgttttaggctataaa 28780864  T
Q  366 taagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 428  Q
    || |||||||||||||| | |||||||||||||||||||||||| ||||||||||| ||||||    
T  28780865 taggcttccatcttcaacaaataccttcattcttcacatcacctcttttcttacattttcttc 28780927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 265 - 428
Target Start/End: Complemental strand, 35158868 - 35158705
Alignment:
Q  265 cggaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataa 364  Q
    ||||||||||||||||||||| | |||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||    
T  35158868 cggaaagattcagagccattattgtgggtttggacggttagaaccactaacacgttttcatttactgtattaatgacctaggacttgttttaggctataa 35158769  T
Q  365 ataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 428  Q
    ||| |||||||||||||| | ||||||||||||||||| |||||| ||||||| ||| ||||||    
T  35158768 ataggcttccatcttcaacaaataccttcattcttcacttcacctcttttcttccattttcttc 35158705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 267 - 428
Target Start/End: Complemental strand, 33281233 - 33281072
Alignment:
Q  267 gaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaat 366  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||    
T  33281233 gaaagattcagagccattaatgtgggtttggacggttacaaccactaacacgttttcattgattgtattaatgacctaagacttgttttaggctataaat 33281134  T
Q  367 aagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 428  Q
    | |||| ||||||||| | ||||||||||||||||| |||||| ||||||| ||| ||||||    
T  33281133 aggcttacatcttcaacaaataccttcattcttcacttcacctcttttcttccattttcttc 33281072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 265 - 428
Target Start/End: Original strand, 52416919 - 52417085
Alignment:
Q  265 cggaaagattcagagccattaatatgggtttggacggttacaa---ccactaacacgttttcattgactgtattaatgatctaggacttgttttaggcta 361  Q
    ||||||||||||||||||||||| |||||||||||||||||||   ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||    
T  52416919 cggaaagattcagagccattaatgtgggtttggacggttacaacaaccactaacacgttttcattgactgtattaatgacctaagacttgttttaggcta 52417018  T
Q  362 taaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 428  Q
    |||||| |||||||||||||| | ||||| ||||||||||| |||||| ||||||||||| ||||||    
T  52417019 taaataggcttccatcttcaacaaataccctcattcttcacttcacctcttttcttacattttcttc 52417085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 265 - 428
Target Start/End: Complemental strand, 16024022 - 16023859
Alignment:
Q  265 cggaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataa 364  Q
    ||||||||||||||| ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||    
T  16024022 cggaaagattcagagtcattaatgtgggtttggacggttgcaaccactaacacgttttcattgactgtattaataacctatgacttgttttaggctataa 16023923  T
Q  365 ataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 428  Q
    ||| |||||||| ||||| | ||||||||||||||||| |||||| ||||||||||| ||||||    
T  16023922 ataggcttccatattcaacaaataccttcattcttcacttcacctcttttcttacattttcttc 16023859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 265 - 428
Target Start/End: Complemental strand, 31093255 - 31093092
Alignment:
Q  265 cggaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataa 364  Q
    ||||||||||||||||||||| | |||||||||||||||||||||||||||||| | ||||||||||||||||||| ||| |||||||||||||||||||    
T  31093255 cggaaagattcagagccattattgtgggtttggacggttacaaccactaacacgatctcattgactgtattaatgacctatgacttgttttaggctataa 31093156  T
Q  365 ataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 428  Q
    ||| |||||||||||||| | ||||||||||||||||| |||||| ||||||| ||| ||||||    
T  31093155 ataggcttccatcttcaacaaataccttcattcttcacttcacctcttttcttccattttcttc 31093092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 265 - 428
Target Start/End: Complemental strand, 1602932 - 1602770
Alignment:
Q  265 cggaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataa 364  Q
    ||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||    
T  1602932 cggaaagattcagagtcattaatgtggatttggacggttacaaccactaacacgtttt-attgactgtattaatgacctaggacttgttttaggctataa 1602834  T
Q  365 ataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 428  Q
    ||| |||| ||||||||| | ||||||||||||||||| |||||| ||||||| ||| ||||||    
T  1602833 ataggctttcatcttcaacaaataccttcattcttcacttcacctcttttcttccattttcttc 1602770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 265 - 428
Target Start/End: Complemental strand, 45462400 - 45462237
Alignment:
Q  265 cggaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataa 364  Q
    ||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  45462400 cggaaagattcagagccattattgtgggtttggacggttacaaccactgacacgttttcattgactgtattaatgatctatgacttgttttaggctataa 45462301  T
Q  365 ataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 428  Q
    |||  ||| ||||||||| | ||| ||||||||||||| |||||| ||||||| ||| ||||||    
T  45462300 atagactttcatcttcaacaaatatcttcattcttcacttcacctattttcttccattttcttc 45462237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 276 - 428
Target Start/End: Original strand, 2013733 - 2013885
Alignment:
Q  276 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 375  Q
    |||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||  |||||||    
T  2013733 agagtcattaatgtggatttggacggttacaaccactaacacgttttcattgactgtattaatgacctaggacttgttttaggctataaattggcttcca 2013832  T
Q  376 tcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 428  Q
    ||||||| | ||||||||||||||||| |||||| ||||||| ||| ||||||    
T  2013833 tcttcaacaaataccttcattcttcacttcacctcttttcttccattttcttc 2013885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 276 - 428
Target Start/End: Original strand, 4189874 - 4190026
Alignment:
Q  276 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 375  Q
    |||| ||||||| |||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||| |||||||    
T  4189874 agagtcattaatgtgggtttggacggttacaaccactaacacgtttttattgactatattaatgacctaggacttgttttaggctataaataggcttcca 4189973  T
Q  376 tcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 428  Q
    ||||||| | ||||||||||||||||| |||||| ||||||| ||| ||||||    
T  4189974 tcttcaacaaataccttcattcttcacttcacctcttttcttccattttcttc 4190026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 276 - 428
Target Start/End: Original strand, 38551270 - 38551422
Alignment:
Q  276 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 375  Q
    |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |||||||    
T  38551270 agagccattaatgtaggtttggacggttacaaccactaacacgttttcattgactgtactaatgacctaggacttgttttaggctataaataggcttcca 38551369  T
Q  376 tcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 428  Q
    ||||||| | ||||||||||||||||| |||| | ||||||| ||| ||||||    
T  38551370 tcttcaacaaataccttcattcttcacttcacatcttttcttccattttcttc 38551422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 265 - 428
Target Start/End: Complemental strand, 49374466 - 49374304
Alignment:
Q  265 cggaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataa 364  Q
    ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |||||| ||| |||||||||||||||||||    
T  49374466 cggaaagattcagagccattaatgtgggtttggacagttacaaccactaacacgttttcattgactgta-taatgacctatgacttgttttaggctataa 49374368  T
Q  365 ataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 428  Q
    ||| |||||||||||||| | | |||| |||||||||| |||||| ||||||| ||| ||||||    
T  49374367 ataggcttccatcttcaacaaaaacctccattcttcacttcacctcttttcttccattttcttc 49374304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 265 - 428
Target Start/End: Complemental strand, 30003762 - 30003597
Alignment:
Q  265 cggaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgtt--ttaggctat 362  Q
    ||||||||||||||| ||||| | ||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||  |||||||||    
T  30003762 cggaaagattcagagtcattattgtgggtttggacggttacaagcaataacacgttttcattgactgtattaatgacctaggacttgtttattaggctat 30003663  T
Q  363 aaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 428  Q
    ||||| |||||||||||||| | ||||||||||||||||| |||||| ||||||| ||| ||||||    
T  30003662 aaataggcttccatcttcaacaaataccttcattcttcacttcacctcttttcttccattttcttc 30003597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 276 - 428
Target Start/End: Complemental strand, 4048271 - 4048119
Alignment:
Q  276 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 375  Q
    |||| ||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||| |||||||    
T  4048271 agagtcattaatgtaggtttggacggttacaaccactaacacgttttcattgattgtattaataacctaggacttgttttaggctataaataggcttcca 4048172  T
Q  376 tcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 428  Q
    ||||||| | ||||||||||||||||| |||||| ||||||| ||| ||||||    
T  4048171 tcttcaacaaataccttcattcttcacttcacctcttttcttccattttcttc 4048119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 265 - 417
Target Start/End: Complemental strand, 51538794 - 51538642
Alignment:
Q  265 cggaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataa 364  Q
    ||||||||||||| ||||||||| ||||||||||| ||| ||||||| |||| |||||||||||||||||||||||  ||||||||||||||||||||||    
T  51538794 cggaaagattcagggccattaatgtgggtttggacagttgcaaccaccaacatgttttcattgactgtattaatgacttaggacttgttttaggctataa 51538695  T
Q  365 ataagcttccatcttcaagatataccttcattcttcacatcaccttttttctt 417  Q
    ||| |||||||||||||| | ||||||||||||||||| |||||| |||||||    
T  51538694 atatgcttccatcttcaacaaataccttcattcttcacttcacctcttttctt 51538642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 276 - 428
Target Start/End: Complemental strand, 6963592 - 6963440
Alignment:
Q  276 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 375  Q
    |||||||||||| ||||||||||||||||||| ||||||||| |||||||||||| || |||||| ||||||||| |||||||||||||||| |||||||    
T  6963592 agagccattaatgtgggtttggacggttacaatcactaacacattttcattgactatagtaatgacctaggacttattttaggctataaataggcttcca 6963493  T
Q  376 tcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 428  Q
    ||||||| | ||||||||||||||||| |||||| ||||||| ||| ||||||    
T  6963492 tcttcaacaaataccttcattcttcacttcacctcttttcttccattttcttc 6963440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 276 - 417
Target Start/End: Original strand, 168540 - 168681
Alignment:
Q  276 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 375  Q
    ||||||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |||||||||  ||||||    
T  168540 agagccactaatgtgggtttggacgtttacaaccactaacacgttttcattgactgtattaatgacctatgacttgttttagactataaatagccttcca 168639  T
Q  376 tcttcaagatataccttcattcttcacatcaccttttttctt 417  Q
    ||||||| | ||||||||||||||||| |||||| |||||||    
T  168640 tcttcaacaaataccttcattcttcacttcacctcttttctt 168681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 292 - 417
Target Start/End: Complemental strand, 16452052 - 16451927
Alignment:
Q  292 gtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatatacct 391  Q
    ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||  | ||||||    
T  16452052 gtttgaacggttacaaccactaacacgttttcattgactgtagtaatgatctaggacttgttttaggctataaataggcttccatcttcagcagatacct 16451953  T
Q  392 tcattcttcacatcaccttttttctt 417  Q
    ||||||||||| |||||| |||||||    
T  16451952 tcattcttcacttcacctcttttctt 16451927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 276 - 428
Target Start/End: Original strand, 15542841 - 15542992
Alignment:
Q  276 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 375  Q
    ||||| |||||| |||||||||||||||| ||| ||||||||||||||||||||| || |||||| |||||||||||||||||||||||||| |||||||    
T  15542841 agagcaattaatgtgggtttggacggttaaaac-actaacacgttttcattgactatagtaatgacctaggacttgttttaggctataaataggcttcca 15542939  T
Q  376 tcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 428  Q
    ||||||| | ||||||||||||||||| |||||| ||||||| ||| ||||||    
T  15542940 tcttcaacaaataccttcattcttcacttcacctcttttcttccattttcttc 15542992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 276 - 428
Target Start/End: Complemental strand, 45924736 - 45924584
Alignment:
Q  276 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 375  Q
    |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| | ||| |    
T  45924736 agagccattaatgtgggtttggacggttgcaaccactaacacgttttcattgactgtattaatgacctatgacttgttttaggctataaataggtttcaa 45924637  T
Q  376 tcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 428  Q
    ||||||| | |||||||||||| |||| | |||| ||||||| ||| ||||||    
T  45924636 tcttcaacaaataccttcattcctcacttaacctcttttcttccattttcttc 45924584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 268 - 421
Target Start/End: Complemental strand, 55136814 - 55136658
Alignment:
Q  268 aaagattcagagccattaatatgggtttggacggttacaac---cactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataa 364  Q
    ||||||||| | |||||||| ||||||||||||||||||||   |||||||||||| ||||||| ||||||||||| ||| |||||||||||||||||||    
T  55136814 aaagattcaaatccattaatgtgggtttggacggttacaacaaccactaacacgttatcattgattgtattaatgacctatgacttgttttaggctataa 55136715  T
Q  365 ataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacat 421  Q
    ||| |||| ||||||||| | ||||||||||||||||| |||||| |||||||||||    
T  55136714 ataggctttcatcttcaacaaataccttcattcttcacttcacctcttttcttacat 55136658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 265 - 428
Target Start/End: Original strand, 38218251 - 38218417
Alignment:
Q  265 cggaaagattcagagccattaatatgggtttggacggttacaa---ccactaacacgttttcattgactgtattaatgatctaggacttgttttaggcta 361  Q
    ||||||| || ||||||| |||| |||||||||||| ||||||   ||||||||||||||||||||||||||||||||| |||| ||||||||||| |||    
T  38218251 cggaaaggtttagagccactaatgtgggtttggacgattacaacaaccactaacacgttttcattgactgtattaatgacctagaacttgttttagccta 38218350  T
Q  362 taaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 428  Q
    |||||| |||||||||||||| | |||||| |||||||||| |||||| |||| |||||| ||||||    
T  38218351 taaataggcttccatcttcaacaaatacctacattcttcacttcacctctttttttacattttcttc 38218417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 265 - 428
Target Start/End: Original strand, 43841863 - 43842029
Alignment:
Q  265 cggaaagattcagagccattaatatgggtttggacggttacaa---ccactaacacgttttcattgactgtattaatgatctaggacttgttttaggcta 361  Q
    |||||||||||| |||||||||| |||||||||||||||||||   ||||||| ||||||| ||||||||||||||||| ||| ||||||||||||||||    
T  43841863 cggaaagattcatagccattaatgtgggtttggacggttacaacaaccactaagacgttttaattgactgtattaatgacctatgacttgttttaggcta 43841962  T
Q  362 taaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 428  Q
    ||||||  ||| ||||||||| | |||| |||||||||||  |||||| ||||||||||| ||||||    
T  43841963 taaatagactttcatcttcaacaaatacattcattcttcaattcacctattttcttacattttcttc 43842029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 268 - 421
Target Start/End: Original strand, 9036089 - 9036244
Alignment:
Q  268 aaagattcagagccattaatatgggtttggacggttacaa---ccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataa 364  Q
    |||||||||||| ||||||| |||||||||||||||||||   |||||||||||||||||||||||||||||||||  |||||||| |||||||||||||    
T  9036089 aaagattcagagtcattaatgtgggtttggacggttacaacaaccactaacacgttttcattgactgtattaatgacttaggactt-ttttaggctataa 9036187  T
Q  365 ataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacat 421  Q
    ||| |||| ||||||||| | |||| |||||||||||  |||||| |||||||||||    
T  9036188 ataggctttcatcttcaacaaatacattcattcttcatttcacctcttttcttacat 9036244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 265 - 394
Target Start/End: Original strand, 56463635 - 56463767
Alignment:
Q  265 cggaaagattcagagccattaatatgggtttggacggttacaa---ccactaacacgttttcattgactgtattaatgatctaggacttgttttaggcta 361  Q
    |||||||| || ||||||||||| |||||||||||||||||||   |||||||||| |||||||||||||||||||||| |  |||||||||||||||||    
T  56463635 cggaaagactcggagccattaatgtgggtttggacggttacaacaaccactaacacattttcattgactgtattaatgaccgtggacttgttttaggcta 56463734  T
Q  362 taaataagcttccatcttcaagatataccttca 394  Q
    |||||| |||||||||||||| | |||||||||    
T  56463735 taaataggcttccatcttcaacaaataccttca 56463767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 276 - 427
Target Start/End: Original strand, 28310890 - 28311042
Alignment:
Q  276 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggac-ttgttttaggctataaataagcttcc 374  Q
    |||| ||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||| ||| ||| ||||||||  ||||||||| ||||||    
T  28310890 agagtcattaatgtgggtttgaacggttacaaccactaacacgttttcattgaccgtattaatgacctaagactttgttttatactataaataggcttcc 28310989  T
Q  375 atcttcaagatataccttcattcttcacatcaccttttttcttacatattctt 427  Q
    |||||||| | ||||||||||||||||  |||||| |||| || ||| |||||    
T  28310990 atcttcaacaaataccttcattcttcatttcacctcttttattccattttctt 28311042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 276 - 428
Target Start/End: Original strand, 35319896 - 35320048
Alignment:
Q  276 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 375  Q
    |||| ||||||| || ||||||||||||||||| ||||||||||||||||| ||| || |||||| ||| ||||||||||| |||||||||| |||||||    
T  35319896 agagtcattaatgtgagtttggacggttacaactactaacacgttttcattaactatagtaatgacctatgacttgttttaagctataaataggcttcca 35319995  T
Q  376 tcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 428  Q
    ||||||| | |||| |||||||| ||| |||||| ||||||| ||| ||||||    
T  35319996 tcttcaacaaatactttcattctccacttcacctcttttcttccattttcttc 35320048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 337 - 428
Target Start/End: Original strand, 39807338 - 39807429
Alignment:
Q  337 atgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 428  Q
    ||||||||||| |||||||| |||||||||| |||| ||||||||| | || |||||||||||||| |||||| ||||||||||| ||||||    
T  39807338 atgatctaggatttgttttacgctataaataggctttcatcttcaacaaattccttcattcttcacttcacctcttttcttacattttcttc 39807429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 313 - 419
Target Start/End: Original strand, 34953601 - 34953707
Alignment:
Q  313 aacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcacctttt 412  Q
    ||||||||||  ||||||||| | |||||||||||||| |||||||||||||||| | || ||||||||| | |   ||| ||||||||| |||||||||    
T  34953601 aacacgttttatttgactgtagttatgatctaggacttattttaggctataaataggtttgcatcttcaacaaacttctttattcttcacttcacctttt 34953700  T
Q  413 ttcttac 419  Q
    |||||||    
T  34953701 ttcttac 34953707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 337 - 433
Target Start/End: Complemental strand, 40602818 - 40602722
Alignment:
Q  337 atgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttcgacat 433  Q
    |||||||||||||||||| | |||||||||| |||| ||||||||| | |  |||||||||||||| |||||| ||||||||| | |||||| ||||    
T  40602818 atgatctaggacttgtttaatgctataaataggcttacatcttcaacaaactccttcattcttcacttcacctcttttcttactttttcttcaacat 40602722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 313 - 401
Target Start/End: Complemental strand, 20516770 - 20516682
Alignment:
Q  313 aacacgttttcattgactgta-ttaatgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttca 401  Q
    ||||||||||  ||||||||| ||||| |||||||| ||||||||||||||||||| |||| ||||||||| | || |||||||||||||    
T  20516770 aacacgttttatttgactgtagttaat-atctaggatttgttttaggctataaataggcttgcatcttcaacaaattccttcattcttca 20516682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 337 - 419
Target Start/End: Complemental strand, 56084189 - 56084107
Alignment:
Q  337 atgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttac 419  Q
    |||||||||||||||||| |||||||||||| |||| ||| ||||| | || | |||||||||||| || | | |||||||||    
T  56084189 atgatctaggacttgtttaaggctataaatatgcttgcatattcaacaaattcattcattcttcacttctcatcttttcttac 56084107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 120; Significance: 3e-61; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 265 - 428
Target Start/End: Original strand, 42882579 - 42882742
Alignment:
Q  265 cggaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataa 364  Q
    ||||||||||||||||||||| | |||||||||| |||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||    
T  42882579 cggaaagattcagagccattattgtgggtttggatggttacaaccactaacacattttcattgactgtattaatgacctaggacttgttttaggctataa 42882678  T
Q  365 ataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 428  Q
    ||| |||||||||||||| | ||| |||||||||||||||||||| ||||||||||| ||||||    
T  42882679 ataggcttccatcttcaacaaatatcttcattcttcacatcacctcttttcttacattttcttc 42882742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 265 - 428
Target Start/End: Complemental strand, 37952449 - 37952286
Alignment:
Q  265 cggaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataa 364  Q
    ||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  37952449 cggaaagattcagagtcattaatgtgggtttggaccgttacaaccactaacacgttttcattgactgtattaatgacctaggacttgttttaggctataa 37952350  T
Q  365 ataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 428  Q
    | | |||||||||||||| | ||||||||||||||||| |||||| |||||||| || ||||||    
T  37952349 aaaggcttccatcttcaacaaataccttcattcttcacttcacctcttttcttatattttcttc 37952286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 276 - 427
Target Start/End: Complemental strand, 41091305 - 41091154
Alignment:
Q  276 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 375  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||    
T  41091305 agagccattaatgtgggtttggacggttacaaccactaacacgttttcattgactgtattaatgacctaggacttgttttaggctataaataggcttcca 41091206  T
Q  376 tcttcaagatataccttcattcttcacatcaccttttttcttacatattctt 427  Q
    ||||||| | ||||||||||||||||| |||| | ||||||| ||| |||||    
T  41091205 tcttcaacaaataccttcattcttcacttcacttcttttcttccattttctt 41091154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 276 - 428
Target Start/End: Original strand, 50261992 - 50262144
Alignment:
Q  276 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 375  Q
    |||| ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||    
T  50261992 agagtcattaatgtgggtttgaacggttacaaccactaacacgttttcattgactgtattaatgacctaggacttgttttaggctataaataggcttcca 50262091  T
Q  376 tcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 428  Q
    ||||||| | ||||||||||||||||| |||||| ||||||| ||| ||||||    
T  50262092 tcttcaacaaataccttcattcttcacttcacctcttttcttccattttcttc 50262144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 265 - 428
Target Start/End: Complemental strand, 44496634 - 44496471
Alignment:
Q  265 cggaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataa 364  Q
    |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  44496634 cggaaagattcaaagccattaatgtgggtttggacggttacaaccactaacacgttttcattgactgtattaatgacataggacttgttttaggctataa 44496535  T
Q  365 ataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 428  Q
    ||| |||| ||||||||| | |||| ||||||||||||  ||||| ||||||| ||| ||||||    
T  44496534 ataggctttcatcttcaacaaatactttcattcttcactccacctattttcttccattttcttc 44496471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 264 - 428
Target Start/End: Complemental strand, 29961547 - 29961383
Alignment:
Q  264 tcggaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctata 363  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |||||||||||  || ||||| ||||||||||||    
T  29961547 tcggaaagattcagagccattaatgtgggtttgaacggttacaaccactaacacgttttcattgattgtattaatgacttaagacttattttaggctata 29961448  T
Q  364 aataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 428  Q
    ||||  ||||||||||||| | ||||||||||||||||| |||| | ||||||||||| ||||||    
T  29961447 aatagacttccatcttcaacaaataccttcattcttcacttcacatcttttcttacattttcttc 29961383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 276 - 428
Target Start/End: Original strand, 41900288 - 41900440
Alignment:
Q  276 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 375  Q
    |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||    
T  41900288 agagccattaatgtgggtttggacggttacaaccactaacacattttcattgactgtattaatgacctatgacttgttttaggctataaataggcttcca 41900387  T
Q  376 tcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 428  Q
    ||||||| | ||||||||||||||||| | |||| ||||||| ||| ||||||    
T  41900388 tcttcaataaataccttcattcttcaccttacctcttttcttccattttcttc 41900440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 266 - 428
Target Start/End: Original strand, 12700526 - 12700691
Alignment:
Q  266 ggaaagattcagagccattaatatgggtttggacggttacaacca---ctaacacgttttcattgactgtattaatgatctaggacttgttttaggctat 362  Q
    |||||||||||||||||||||| || |||||||| ||||||||||   ||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  12700526 ggaaagattcagagccattaatgtgcgtttggacagttacaaccaccactaacacattttcattgactgtattaatgatctaggacttgttttaggctat 12700625  T
Q  363 aaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 428  Q
    ||||| |||||||||||||| | ||| ||||||||||||| | |||| ||||||||||| ||||||    
T  12700626 aaataggcttccatcttcaacaaatatcttcattcttcacttgacctcttttcttacattttcttc 12700691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 276 - 427
Target Start/End: Complemental strand, 41086537 - 41086386
Alignment:
Q  276 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 375  Q
    |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |||||||    
T  41086537 agagccattaatgtgggtttggaaggttacaaccactaacacgttttcattgactgtattaatgacctaggacttgttttagactataaataggcttcca 41086438  T
Q  376 tcttcaagatataccttcattcttcacatcaccttttttcttacatattctt 427  Q
    ||||||| | ||||||||||||||||| |||| | ||||||| ||| |||||    
T  41086437 tcttcaacaaataccttcattcttcacttcacttcttttcttccattttctt 41086386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 265 - 428
Target Start/End: Original strand, 14587326 - 14587495
Alignment:
Q  265 cggaaagattcagagccattaatatgggtttggacggttacaa---ccactaacacgttttcattgactgtattaatgatctaggacttgttttaggcta 361  Q
    |||||||||||||||||||| || |||||||||||||||||||   |||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  14587326 cggaaagattcagagccatttatgtgggtttggacggttacaacaaccactaacacgttttcattgactgtattaatgacttaggacttgttttaggcta 14587425  T
Q  362 taaata---agcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 428  Q
    ||||||    |||||||||||||| | ||||||||||||||||| |||||| ||||||||||| ||||||    
T  14587426 taaataggcggcttccatcttcaacaaataccttcattcttcacttcacctcttttcttacattttcttc 14587495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 276 - 417
Target Start/End: Complemental strand, 38860814 - 38860673
Alignment:
Q  276 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 375  Q
    |||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |||| ||    
T  38860814 agagccattaatgtgggtttggacggttactaccactaacacgttttcattgaatgtattaatgatctatgacttgttttaggctataaataggctttca 38860715  T
Q  376 tcttcaagatataccttcattcttcacatcaccttttttctt 417  Q
    ||||||| | ||||||||||||||||| |||||| |||||||    
T  38860714 tcttcaacaaataccttcattcttcacttcacctcttttctt 38860673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 276 - 428
Target Start/End: Complemental strand, 12528583 - 12528431
Alignment:
Q  276 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 375  Q
    |||| ||||||||||  ||| ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||    
T  12528583 agagtcattaatatgaatttcgacggttacaaccaccaacacgttttcattgactgtattaatgacctaggacttgttttaggctataaataggcttcca 12528484  T
Q  376 tcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 428  Q
    ||||||| | ||||||||||||||||| |||||| ||||||| ||| ||||||    
T  12528483 tcttcaacaaataccttcattcttcacttcacctattttcttccattttcttc 12528431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 266 - 428
Target Start/End: Complemental strand, 33801514 - 33801349
Alignment:
Q  266 ggaaagattcagagccattaatatgggtttggacggttaca---accactaacacgttttcattgactgtattaatgatctaggacttgttttaggctat 362  Q
    |||||||||||||| ||||||| |||||||||||| |||||   ||||||||||||||||||||||||||| ||||||  ||||||||||||||||||||    
T  33801514 ggaaagattcagagtcattaatgtgggtttggacgattacagcaaccactaacacgttttcattgactgtaataatgacttaggacttgttttaggctat 33801415  T
Q  363 aaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 428  Q
    ||||| |||||||||||||| | |||||| |||||||||| |||||| ||||||||||| ||||||    
T  33801414 aaataggcttccatcttcaaaaaatacctacattcttcacttcacctcttttcttacattttcttc 33801349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 276 - 428
Target Start/End: Original strand, 11952421 - 11952573
Alignment:
Q  276 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 375  Q
    |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||   | ||||| |||||||||||||||| |||||||    
T  11952421 agagccattaatgtgagtttggacggttacaaccactaacacgttttcattgactgtattaatgacaaaagacttattttaggctataaataggcttcca 11952520  T
Q  376 tcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 428  Q
    ||||||| | ||||||||||||||||| |||||| ||||||| ||| ||||||    
T  11952521 tcttcaacaaataccttcattcttcacttcacctcttttcttccattttcttc 11952573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 276 - 428
Target Start/End: Complemental strand, 49851846 - 49851694
Alignment:
Q  276 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 375  Q
    |||||||| ||| | |||||||||||||||||||||||||| |||||||||||||||| |||||| |||||||||||||||||||||||||| |||| ||    
T  49851846 agagccatcaatgtaggtttggacggttacaaccactaacatgttttcattgactgtactaatgacctaggacttgttttaggctataaataggctttca 49851747  T
Q  376 tcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 428  Q
    ||||||| | ||||||||||||||||| |||||| ||||||| ||| ||||||    
T  49851746 tcttcaacaaataccttcattcttcacttcacctcttttcttccattttcttc 49851694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 278 - 415
Target Start/End: Original strand, 52632362 - 52632499
Alignment:
Q  278 agccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttccatc 377  Q
    |||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||    
T  52632362 agccattaatgtgggtttagacggttacaaccactaacacgttttcattgattgtattaatgacctaggacttgttttaggctataaataggcttccatc 52632461  T
Q  378 ttcaagatataccttcattcttcacatcaccttttttc 415  Q
    ||||| | ||  ||||||||||||| |||||| |||||    
T  52632462 ttcaacaaatgtcttcattcttcacttcacctcttttc 52632499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 265 - 428
Target Start/End: Original strand, 3517564 - 3517727
Alignment:
Q  265 cggaaagattcagagccattaatatgggtttggacggttacaac---cactaacacgttttcattgactgtattaatgatctaggacttgttttaggcta 361  Q
    ||||||||||||||||||||||| ||||||||||||||||||||   |||||||||||||||||||||||||   |||| |||||| |||||||||||||    
T  3517564 cggaaagattcagagccattaatgtgggtttggacggttacaacaaccactaacacgttttcattgactgta---atgacctaggagttgttttaggcta 3517660  T
Q  362 taaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 428  Q
    ||||||  |||  |||||||| | ||||||||||||||||| |||||| ||||||||||| ||||||    
T  3517661 taaatagacttttatcttcaacaaataccttcattcttcacttcacctcttttcttacattttcttc 3517727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 292 - 428
Target Start/End: Complemental strand, 27216920 - 27216784
Alignment:
Q  292 gtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatatacct 391  Q
    ||||||||||||||||||||||||||||||||||||| |||| |||||| |||||||||||||||||||||||||| |||| ||||||||| | |||| |    
T  27216920 gtttggacggttacaaccactaacacgttttcattgattgtactaatgacctaggacttgttttaggctataaataggctttcatcttcaaaaaatactt 27216821  T
Q  392 tcattcttcacatcaccttttttcttacatattcttc 428  Q
    ||||||||||| |||||| ||||||| ||| ||||||    
T  27216820 tcattcttcacttcacctcttttcttccattttcttc 27216784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 276 - 427
Target Start/End: Original strand, 23984039 - 23984187
Alignment:
Q  276 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 375  Q
    |||| |||||||  ||||||||||||||||||||||||||| ||||||||||||||||   |||| |||||||||||||||||||||||||| | |||||    
T  23984039 agagtcattaatgagggtttggacggttacaaccactaacatgttttcattgactgta---atgacctaggacttgttttaggctataaataggtttcca 23984135  T
Q  376 tcttcaagatataccttcattcttcacatcaccttttttcttacatattctt 427  Q
    ||||||| | ||||||||||||||||| |||||| ||||||| ||| |||||    
T  23984136 tcttcaacaaataccttcattcttcacttcacctcttttcttccattttctt 23984187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 268 - 428
Target Start/End: Complemental strand, 41723676 - 41723514
Alignment:
Q  268 aaagattcagagccattaatatgggtttggacggt---tacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataa 364  Q
    |||||||||||||||||||| |||||||||||| |    |||||||| |||||||||||||||||| ||||||||| ||| |||||||||||||||||||    
T  41723676 aaagattcagagccattaatgtgggtttggacgataacaacaaccaccaacacgttttcattgactatattaatgaccta-gacttgttttaggctataa 41723578  T
Q  365 ataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 428  Q
    ||| |||| ||||||||| | ||||||||||||||||| |||||| ||||||| ||| ||||||    
T  41723577 ataggctttcatcttcaacaaataccttcattcttcacttcacctcttttcttccattttcttc 41723514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 326 - 428
Target Start/End: Original strand, 44757581 - 44757683
Alignment:
Q  326 tgactgtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattc 425  Q
    ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||| |||||| ||||||||||| |||    
T  44757581 tgactgtattaatgacctaggacttgttttaggctataaataggcttccatcttcaacaaataccttcattcttcacttcacctcttttcttacattttc 44757680  T
Q  426 ttc 428  Q
    |||    
T  44757681 ttc 44757683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 268 - 334
Target Start/End: Original strand, 48964920 - 48964986
Alignment:
Q  268 aaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtat 334  Q
    |||||||||||| ||||||| |||||||||||||||| || ||||||||||||||||||||||||||    
T  48964920 aaagattcagagtcattaatgtgggtttggacggttagaatcactaacacgttttcattgactgtat 48964986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 337 - 419
Target Start/End: Complemental strand, 34549931 - 34549849
Alignment:
Q  337 atgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttac 419  Q
    ||||||||||||||||||||||||||||||| | || ||| ||||| | || |||||||||||||| |||||| |||||||||    
T  34549931 atgatctaggacttgttttaggctataaataggtttgcatattcaacaaattccttcattcttcacgtcacctgttttcttac 34549849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 370 - 428
Target Start/End: Complemental strand, 22858801 - 22858743
Alignment:
Q  370 cttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 428  Q
    ||||||||||||| | |||||||||||||||||||||||| ||||||||||| ||||||    
T  22858801 cttccatcttcaacaaataccttcattcttcacatcacctcttttcttacattttcttc 22858743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 360 - 428
Target Start/End: Original strand, 48964984 - 48965052
Alignment:
Q  360 tataaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 428  Q
    |||||||| |||||||||||||| | |||| ||||||||||| ||||||| ||||||||||| ||||||    
T  48964984 tataaataggcttccatcttcaacaaatacgttcattcttcatatcacctcttttcttacattttcttc 48965052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 265 - 312
Target Start/End: Complemental strand, 22858847 - 22858800
Alignment:
Q  265 cggaaagattcagagccattaatatgggtttggacggttacaaccact 312  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  22858847 cggaaagattcagagccattaatgtgggttttgacggttacaaccact 22858800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 343 - 428
Target Start/End: Original strand, 30518205 - 30518290
Alignment:
Q  343 taggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 428  Q
    ||||||||||||||||||||||||| |||| ||| ||||| | ||  ||||||||||||| | | || ||||||| ||| ||||||    
T  30518205 taggacttgttttaggctataaataggcttgcatgttcaaaaaatttcttcattcttcacttaatctcttttctttcattttcttc 30518290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 313 - 372
Target Start/End: Complemental strand, 29913928 - 29913869
Alignment:
Q  313 aacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagctt 372  Q
    ||||||||||||||| ||||| | || | |||||||||||||| || |||||||||||||    
T  29913928 aacacgttttcattgtctgtacttataacctaggacttgttttgggttataaataagctt 29913869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 346 - 400
Target Start/End: Original strand, 22334962 - 22335016
Alignment:
Q  346 gacttgttttaggctataaataagcttccatcttcaagatataccttcattcttc 400  Q
    |||||||||||||||||||| | ||||| |||||||| || | ||||||||||||    
T  22334962 gacttgttttaggctataaaaaggcttcgatcttcaacattttccttcattcttc 22335016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 116; Significance: 7e-59; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 265 - 428
Target Start/End: Original strand, 8239976 - 8240139
Alignment:
Q  265 cggaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataa 364  Q
    ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||||| |  ||||||||||||||||||||||    
T  8239976 cggaaagattcagagccattattgtgggtttggacggttacaaccactaacacgttttcattaactgtattaataacataggacttgttttaggctataa 8240075  T
Q  365 ataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 428  Q
    ||| |||||||||||||| | ||||||||||||||||| |||||||||||||| ||| ||||||    
T  8240076 ataggcttccatcttcaacaaataccttcattcttcacttcaccttttttcttccattttcttc 8240139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 265 - 428
Target Start/End: Original strand, 39318584 - 39318747
Alignment:
Q  265 cggaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataa 364  Q
    ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  39318584 cggaaagattcagagccattattgtgggtttggacggttacaaccactaacacgttttcattgactgtattaatgacctatgacttgttttaggctataa 39318683  T
Q  365 ataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 428  Q
    ||| |||||||||||||| | ||||||||||| ||||| |||||| ||||||| ||| ||||||    
T  39318684 ataggcttccatcttcaacaaataccttcattattcacttcacctcttttcttccattttcttc 39318747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 265 - 428
Target Start/End: Original strand, 35684004 - 35684167
Alignment:
Q  265 cggaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataa 364  Q
    ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||||||| | || ||||||||||||||||||    
T  35684004 cggaaagattcagagccattattgtgggtttggacggttacaaccactaacacgttttcattgactgttttaatgacccagtacttgttttaggctataa 35684103  T
Q  365 ataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 428  Q
    ||| |||||||||||||| | ||||||||||||||||| |||||  ||||||| ||| ||||||    
T  35684104 ataggcttccatcttcaacaaataccttcattcttcacttcaccaattttcttccattttcttc 35684167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 265 - 428
Target Start/End: Original strand, 40105238 - 40105401
Alignment:
Q  265 cggaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataa 364  Q
    ||||||||||||||| ||||| | ||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  40105238 cggaaagattcagagtcattattgtgggtttggacggttgcaaccactaacacgttttcattgactgtattaatgacctaggacttgttttaggctataa 40105337  T
Q  365 ataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 428  Q
    ||| |||| ||||||||| | ||||||||||||||||  |||||| ||||||| ||| ||||||    
T  40105338 ataggctttcatcttcaacaaataccttcattcttcaattcacctcttttcttccattttcttc 40105401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 276 - 428
Target Start/End: Original strand, 43098545 - 43098697
Alignment:
Q  276 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 375  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |||||| |||||||||||||||||||||||||| |||||||    
T  43098545 agagccattaatgtgggtttggacggttacaaccactaacacgttttcattgactataataatgacctaggacttgttttaggctataaataggcttcca 43098644  T
Q  376 tcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 428  Q
    ||||||| | |||| |||||||||||| |||||| ||||||| ||| ||||||    
T  43098645 tcttcaacaaatacattcattcttcacttcacctcttttcttccattttcttc 43098697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 276 - 428
Target Start/End: Complemental strand, 6347433 - 6347281
Alignment:
Q  276 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 375  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |||||| |||||||||||||||||||||||| | |||||||    
T  6347433 agagccattaatgtgggtttggacggttacaaccactaacacgttttcatttactgtactaatgacctaggacttgttttaggctataaacatgcttcca 6347334  T
Q  376 tcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 428  Q
    ||||||| | ||||||||||||||||  |||||| ||||||| ||| ||||||    
T  6347333 tcttcaacaaataccttcattcttcatttcacctcttttcttccattttcttc 6347281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 264 - 428
Target Start/End: Complemental strand, 11076378 - 11076214
Alignment:
Q  264 tcggaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctata 363  Q
    |||||||||||||||| ||||| | |||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |||||    
T  11076378 tcggaaagattcagagtcattattgtgggtttggacggttacaaccactaacacgtttttattgactgtattaatgacctaggacttgttttagactata 11076279  T
Q  364 aataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 428  Q
    ||||  ||||||| ||||| | ||||||| ||||||||| |||||| ||||||| ||| ||||||    
T  11076278 aatagacttccattttcaacaaataccttaattcttcacttcacctcttttcttccattttcttc 11076214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 276 - 428
Target Start/End: Complemental strand, 37098471 - 37098319
Alignment:
Q  276 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 375  Q
    |||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||  | |||||||||||||||||||||||||||| ||    
T  37098471 agagccattaatgtgggtttagacggttacaaccactaacacgtttttattgactgtattaatgacatgggacttgttttaggctataaataagctttca 37098372  T
Q  376 tcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 428  Q
    ||||||| | ||||||||||||||||| |||||| ||||||| ||| ||||||    
T  37098371 tcttcaacaaataccttcattcttcacttcacctcttttcttccattttcttc 37098319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 265 - 428
Target Start/End: Original strand, 39260278 - 39260444
Alignment:
Q  265 cggaaagattcagagccattaatatgggtttggacggttacaaccac---taacacgttttcattgactgtattaatgatctaggacttgttttaggcta 361  Q
    ||||||||||||||| ||||||| |||||||||||||||||||| ||   ||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  39260278 cggaaagattcagagtcattaatgtgggtttggacggttacaacaaccattaacacgtttttattgactgtattaatgacctaggacttgttttaggcta 39260377  T
Q  362 taaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 428  Q
    |||||| ||||| |||||||| | |||| |||||||||||| |||||| ||||||||||| ||||||    
T  39260378 taaataggcttctatcttcaacaaatacattcattcttcacttcacctcttttcttacattttcttc 39260444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 276 - 428
Target Start/End: Complemental strand, 32337948 - 32337796
Alignment:
Q  276 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 375  Q
    |||||||| ||| | ||||||||||||||||| |||||||||||||||||||| |||| |||||| |||||||||| ||||||||||||||| |||||||    
T  32337948 agagccatcaatgtaggtttggacggttacaatcactaacacgttttcattgattgtactaatgacctaggacttggtttaggctataaataggcttcca 32337849  T
Q  376 tcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 428  Q
    ||||||| | ||||||||||||||||| |||||| ||||||| ||| ||||||    
T  32337848 tcttcaacaaataccttcattcttcacttcacctcttttcttccattttcttc 32337796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 276 - 428
Target Start/End: Original strand, 31701047 - 31701196
Alignment:
Q  276 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 375  Q
    ||||| |||||| |||||||   |||||| ||||| |||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |||||||    
T  31701047 agagctattaatgtgggttt---cggttataaccaataacacgttttcattgactgtagtaatgacctaggacttgttttaggctataaataggcttcca 31701143  T
Q  376 tcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 428  Q
    ||||||| | ||||||||||||||||| |||||| ||||||| ||| ||||||    
T  31701144 tcttcaacaaataccttcattcttcacttcacctcttttcttccattttcttc 31701196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 276 - 407
Target Start/End: Complemental strand, 20091998 - 20091867
Alignment:
Q  276 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 375  Q
    |||||||||||| | ||||||||| ||||||||||||||||||||||||||||| ||| ||||||  ||||||||||||||||||||| ||| |||||||    
T  20091998 agagccattaatgtcggtttggacagttacaaccactaacacgttttcattgaccgtagtaatgacataggacttgttttaggctatatataggcttcca 20091899  T
Q  376 tcttcaagatataccttcattcttcacatcac 407  Q
    ||||||| | ||||||||||||||||| ||||    
T  20091898 tcttcaacaaataccttcattcttcacttcac 20091867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 276 - 417
Target Start/End: Original strand, 23144107 - 23144249
Alignment:
Q  276 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaa-tgatctaggacttgttttaggctataaataagcttcc 374  Q
    |||| ||||||| | |||||||||| ||||||||||||||| |||||||||||||||| ||| ||| ||||||||||||||||| |||||||| ||||||    
T  23144107 agagtcattaatgtaggtttggacgattacaaccactaacatgttttcattgactgtagtaaatgacctaggacttgttttaggttataaataggcttcc 23144206  T
Q  375 atcttcaagatataccttcattcttcacatcaccttttttctt 417  Q
    |||||||| | ||||||||||||||||| |||||| |||||||    
T  23144207 atcttcaacaaataccttcattcttcacttcacctcttttctt 23144249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 310 - 428
Target Start/End: Complemental strand, 32947183 - 32947065
Alignment:
Q  310 actaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcacct 409  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||| |||||||| | ||||||||||||||||| ||||||    
T  32947183 actaacacgttttcattgactgtattaatgacctaggacttgttttaggctataagtaggcttctatcttcaacaaataccttcattcttcacttcacct 32947084  T
Q  410 tttttcttacatattcttc 428  Q
     ||||||||||| ||||||    
T  32947083 cttttcttacattttcttc 32947065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 276 - 417
Target Start/End: Complemental strand, 627512 - 627371
Alignment:
Q  276 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 375  Q
    |||||||| ||| | | |||||||||||||||||||||||| |||||||||||||||| |||||| ||| |||||||||||||||||||||| ||||| |    
T  627512 agagccatcaatgtagctttggacggttacaaccactaacaagttttcattgactgtactaatgaactaagacttgttttaggctataaataggcttcta 627413  T
Q  376 tcttcaagatataccttcattcttcacatcaccttttttctt 417  Q
    ||||||| | |||||||||||||||||  ||||| |||||||    
T  627412 tcttcaacaaataccttcattcttcactccacctcttttctt 627371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 293 - 417
Target Start/End: Original strand, 586428 - 586552
Alignment:
Q  293 tttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatatacctt 392  Q
    |||||||||||||||||||||||| |||||||||||||||| |||||| ||| |||||||||||||||||||||| ||||| |||||||| | |||||||    
T  586428 tttggacggttacaaccactaacaagttttcattgactgtactaatgaactaagacttgttttaggctataaataggcttctatcttcaacaaatacctt 586527  T
Q  393 cattcttcacatcaccttttttctt 417  Q
    ||||||||||  ||||| |||||||    
T  586528 cattcttcactccacctcttttctt 586552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 265 - 308
Target Start/End: Original strand, 42131889 - 42131932
Alignment:
Q  265 cggaaagattcagagccattaatatgggtttggacggttacaac 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  42131889 cggaaagattcagagccattaatatgggtttggacggttacaac 42131932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 316 - 415
Target Start/End: Complemental strand, 28284548 - 28284449
Alignment:
Q  316 acgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcaccttttttc 415  Q
    |||||||  ||||| ||| | |||||||||||| ||||||||||| |||||| | || ||||||||| | || |||||||||||||| |||||| |||||    
T  28284548 acgttttatttgaccgtagttatgatctaggacatgttttaggctgtaaataggtttgcatcttcaacaaattccttcattcttcacttcacctcttttc 28284449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 276 - 326
Target Start/End: Original strand, 13546259 - 13546309
Alignment:
Q  276 agagccattaatatgggtttggacggttacaaccactaacacgttttcatt 326  Q
    |||||||||||| || |||||||||||||||||||||||||  ||||||||    
T  13546259 agagccattaatgtgtgtttggacggttacaaccactaacagcttttcatt 13546309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 276 - 326
Target Start/End: Complemental strand, 13678214 - 13678164
Alignment:
Q  276 agagccattaatatgggtttggacggttacaaccactaacacgttttcatt 326  Q
    |||||||||||| || |||||||||||||||||||||||||  ||||||||    
T  13678214 agagccattaatgtgtgtttggacggttacaaccactaacagcttttcatt 13678164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 339 - 422
Target Start/End: Complemental strand, 11457100 - 11457017
Alignment:
Q  339 gatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacata 422  Q
    |||||| ||||||||||||| |||||| | |||||||||||||| | ||  |||| || ||||| | |||| ||||||||||||    
T  11457100 gatctatgacttgttttaggttataaacaggcttccatcttcaacaaatttcttcctttttcacttaacctcttttcttacata 11457017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 428
Target Start/End: Original strand, 42131968 - 42132020
Alignment:
Q  376 tcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 428  Q
    ||||||| | ||||||||||||||||| |||||| ||||| ||||| ||||||    
T  42131968 tcttcaacaaataccttcattcttcacttcacctcttttcgtacattttcttc 42132020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 116; Significance: 7e-59; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 265 - 428
Target Start/End: Complemental strand, 8734842 - 8734680
Alignment:
Q  265 cggaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataa 364  Q
    ||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  8734842 cggaaagattcagagccattaatgtgggtttggacgattacaaccactaacacgttttcattgactgtattaatgacctaggacttgttttaggctataa 8734743  T
Q  365 ataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 428  Q
    ||| ||||||||| | || | ||||||||||||||||| |||||| ||||||||||| ||||||    
T  8734742 ataggcttccatc-tgaacaaataccttcattcttcacttcacctcttttcttacattttcttc 8734680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 265 - 428
Target Start/End: Complemental strand, 27114453 - 27114290
Alignment:
Q  265 cggaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataa 364  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  27114453 cggaaagattcagagccattaatgtgggtttggacggttacaaccaccaacacgttttcattgactgtattaatgacataggacttgttttaggctataa 27114354  T
Q  365 ataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 428  Q
    ||| |||||||||||||| | ||| ||||||||||||| |||||| ||||||| ||| ||||||    
T  27114353 ataggcttccatcttcaacaaatatcttcattcttcacttcacctcttttcttccattttcttc 27114290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 268 - 428
Target Start/End: Complemental strand, 37012970 - 37012810
Alignment:
Q  268 aaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaata 367  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||    
T  37012970 aaagattcagagccattaatgtgggtttggacggttacaaccactaacacgttttcattgactgtatgaatgacctagaacttgttttaggctataaata 37012871  T
Q  368 agcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 428  Q
     |||||||||||||| | |||| |||||||||||| |||||| ||||||| ||| ||||||    
T  37012870 ggcttccatcttcaacaaatactttcattcttcacttcacctcttttcttccattttcttc 37012810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 264 - 428
Target Start/End: Original strand, 13822057 - 13822224
Alignment:
Q  264 tcggaaagattcagagccattaatatgggtttggacggttacaa---ccactaacacgttttcattgactgtattaatgatctaggacttgttttaggct 360  Q
    |||||||||||||||||||||||| ||| |||| ||||||||||   ||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  13822057 tcggaaagattcagagccattaatgtggatttgaacggttacaacaaccactaacacgttttcattgactgtattaatgatctatgacttgttttaggct 13822156  T
Q  361 ataaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 428  Q
    ||||||| | |||||||||||| | ||||||||||||||||| |||||| ||||||||||| ||||||    
T  13822157 ataaataggtttccatcttcaacaaataccttcattcttcacctcacctcttttcttacattttcttc 13822224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 265 - 428
Target Start/End: Complemental strand, 8197560 - 8197394
Alignment:
Q  265 cggaaagattcagagccattaatatgggtttggacggttacaac---cactaacacgttttcattgactgtattaatgatctaggacttgttttaggcta 361  Q
    |||||||||| |||||||||||| ||||||||||||||||||||   |||||||||||||||||||||||||||||||| |||||||||||||||| |||    
T  8197560 cggaaagatttagagccattaatgtgggtttggacggttacaacaaccactaacacgttttcattgactgtattaatgacctaggacttgttttagacta 8197461  T
Q  362 taaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 428  Q
    |||||| |||||||||||||| | ||||||||||||||||| | |||| ||||||||||| ||||||    
T  8197460 taaataggcttccatcttcaacaaataccttcattcttcactttacctattttcttacattttcttc 8197394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 265 - 428
Target Start/End: Complemental strand, 12785306 - 12785140
Alignment:
Q  265 cggaaagattcagagccattaatatgggtttggacggttacaac---cactaacacgttttcattgactgtattaatgatctaggacttgttttaggcta 361  Q
    |||||||||||| |||| ||||| ||||||||||||||||||||   |||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  12785306 cggaaagattcatagccgttaatgtgggtttggacggttacaacaaccactaacacgttttcattgactgtattaatgacctaggacttgttttaggcta 12785207  T
Q  362 taaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 428  Q
    |||||| ||||| |||||||| | ||||||||||||||||| |||||| ||||||||||| ||||||    
T  12785206 taaataggcttcaatcttcaacaaataccttcattcttcacttcacctcttttcttacattttcttc 12785140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 276 - 428
Target Start/End: Original strand, 37030261 - 37030413
Alignment:
Q  276 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 375  Q
    |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  ||||||    
T  37030261 agagccattaatgtgggtttggatggttacaaccactaacacgttttcattgactgtattaatgacctaggacttgttttaggctataaatagacttcca 37030360  T
Q  376 tcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 428  Q
    ||||||| | ||||||||||||||||| |||||| ||||||| ||| ||||||    
T  37030361 tcttcaacaaataccttcattcttcacttcacctcttttcttccattttcttc 37030413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 268 - 428
Target Start/End: Complemental strand, 18809130 - 18808967
Alignment:
Q  268 aaagattcagagccattaatatgggtttggacggttacaac---cactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataa 364  Q
    |||||||||||||||||||| | ||||||||||||||||||   |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  18809130 aaagattcagagccattaatgtaggtttggacggttacaacaaccactaacacgttttcattgactgtattaatgacctatgacttgttttaggctataa 18809031  T
Q  365 ataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 428  Q
    |||  ||||||||||||| | ||||||||||||||||| |||||| ||||||||||| ||||||    
T  18809030 atagtcttccatcttcaacaaataccttcattcttcacttcacctcttttcttacattttcttc 18808967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 265 - 428
Target Start/End: Complemental strand, 12723823 - 12723657
Alignment:
Q  265 cggaaagattcagagccattaatatgggtttggacggttacaac---cactaacacgttttcattgactgtattaatgatctaggacttgttttaggcta 361  Q
    |||||||||||| || | ||||| ||||||||||||||||||||   |||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  12723823 cggaaagattcatagtcgttaatgtgggtttggacggttacaacaaccactaacacgttttcattgactgtattaatgacctaggacttgttttaggcta 12723724  T
Q  362 taaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 428  Q
    |||||| | || ||||||||| | ||||||||||||||||| |||||| ||||||||||| ||||||    
T  12723723 taaataggttttcatcttcaacaaataccttcattcttcacttcacctcttttcttacattttcttc 12723657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 265 - 428
Target Start/End: Complemental strand, 3556770 - 3556607
Alignment:
Q  265 cggaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataa 364  Q
    ||||||||||| ||||| ||| | |||||||||||| |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  3556770 cggaaagattcggagccgttattgtgggtttggacgattacaagcactaacacgttttcattgactgtattaatgacctaggacttgttttaggctataa 3556671  T
Q  365 ataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 428  Q
    ||| ||||||||||| || | || |||||||||||||| |||||| ||||||| ||| ||||||    
T  3556670 atatgcttccatctttaacaaattccttcattcttcacttcacctcttttcttccattttcttc 3556607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 276 - 428
Target Start/End: Complemental strand, 26279172 - 26279020
Alignment:
Q  276 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 375  Q
    |||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||||||||||||||| |||||||    
T  26279172 agagtcattaatgtaggtttggacggttacaaccactaacacgttttcattgactgtactaatgacccaggacttgttttaggctataaataggcttcca 26279073  T
Q  376 tcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 428  Q
    ||||||| | ||||||||||||||||| |||| | ||||||| ||| ||||||    
T  26279072 tcttcaacaaataccttcattcttcacttcacttcttttcttccattttcttc 26279020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 276 - 428
Target Start/End: Complemental strand, 37883562 - 37883410
Alignment:
Q  276 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 375  Q
    |||||||||||| |||||||||||||||||||||||||||| ||||||||||||| || |||||| ||| ||||||||||| |||||||||| |||||||    
T  37883562 agagccattaatgtgggtttggacggttacaaccactaacatgttttcattgactatagtaatgacctaagacttgttttaagctataaataggcttcca 37883463  T
Q  376 tcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 428  Q
    ||||||| | ||||||||||||||||| |||| | ||||||| ||| ||||||    
T  37883462 tcttcaacaaataccttcattcttcacttcacatcttttcttccattttcttc 37883410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 265 - 428
Target Start/End: Original strand, 38679438 - 38679604
Alignment:
Q  265 cggaaagattcagagccattaatatgggtttggacggttacaa---ccactaacacgttttcattgactgtattaatgatctaggacttgttttaggcta 361  Q
    ||||||||||||||||||||||| ||| |||||||||||||||   |||||||||| ||| ||||||||||||||||||  |||||||||||||||||||    
T  38679438 cggaaagattcagagccattaatgtggatttggacggttacaacaaccactaacacttttgcattgactgtattaatgacttaggacttgttttaggcta 38679537  T
Q  362 taaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 428  Q
    |||||| ||||| |||||||| | ||| || |||||||||| |||||| ||||||||||| ||||||    
T  38679538 taaataggcttcaatcttcaacaaatatctacattcttcacttcacctcttttcttacattttcttc 38679604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 276 - 428
Target Start/End: Original strand, 25977135 - 25977283
Alignment:
Q  276 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 375  Q
    |||| ||||||| | |||||||||| |||||||||||||||||||||||||||||||| ||||||  |||||||||||||||| |||||||| |||||||    
T  25977135 agagtcattaatgtaggtttggacgattacaaccactaacacgttttcattgactgtagtaatgacttaggacttgttttaggttataaataggcttcca 25977234  T
Q  376 tcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 428  Q
    ||||||    | ||||||||||||||| |||||| ||||||| ||| ||||||    
T  25977235 tcttca----acaccttcattcttcacttcacctcttttcttccattttcttc 25977283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 291 - 428
Target Start/End: Original strand, 9715327 - 9715464
Alignment:
Q  291 ggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatatacc 390  Q
    ||||||||||||||||||||| ||||||||||||||||||| | |||||| ||| ||||| ||||||||||||||||  ||||||||||||| | ||| |    
T  9715327 ggtttggacggttacaaccaccaacacgttttcattgactgcactaatgacctatgactttttttaggctataaatagacttccatcttcaacaaatagc 9715426  T
Q  391 ttcattcttcacatcaccttttttcttacatattcttc 428  Q
    |||||||||||| |||||| ||||||| ||| ||||||    
T  9715427 ttcattcttcacttcacctcttttcttccattttcttc 9715464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 276 - 428
Target Start/End: Original strand, 11719938 - 11720091
Alignment:
Q  276 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 375  Q
    |||||||||||| | |||||| |||||||| ||||||||||||||||||||||||||| |||||| ||||||||| |||||||| |||||||  ||| ||    
T  11719938 agagccattaatgtaggtttgaacggttacgaccactaacacgttttcattgactgtactaatgacctaggacttattttaggccataaatagactttca 11720037  T
Q  376 tcttcaagatataccttcattc-ttcacatcaccttttttcttacatattcttc 428  Q
    ||||||| | |||||||||||| ||||| |||||| ||||||| ||| ||||||    
T  11720038 tcttcaacaaataccttcattctttcacttcacctcttttctttcattttcttc 11720091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 267 - 428
Target Start/End: Original strand, 16513581 - 16513744
Alignment:
Q  267 gaaagattcagagccattaatatgggtttggacggtt--acaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataa 364  Q
    ||||||||||||||||||| | ||| |||| ||| |   |||||||||||||||||||||| |||||||||||||| ||| |||||||||||  ||||||    
T  16513581 gaaagattcagagccattattgtggttttgtacgttacaacaaccactaacacgttttcatcgactgtattaatgacctatgacttgttttaaactataa 16513680  T
Q  365 ataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 428  Q
    ||| ||||| || ||||| | ||||||||||||||||| |||||| ||||||| ||| ||||||    
T  16513681 ataggcttcaattttcaacaaataccttcattcttcacttcacctcttttcttccattttcttc 16513744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 265 - 367
Target Start/End: Original strand, 8299208 - 8299313
Alignment:
Q  265 cggaaagattcagagccattaatatgggtttggacggttacaac---cactaacacgttttcattgactgtattaatgatctaggacttgttttaggcta 361  Q
    ||||||||||||||| ||||||| |||||||| |||||||||||   ||| |||||||||| ||||||||||||||||| ||| || |||||||||||||    
T  8299208 cggaaagattcagagtcattaatttgggtttgaacggttacaacaaccaccaacacgtttttattgactgtattaatgacctaagaattgttttaggcta 8299307  T
Q  362 taaata 367  Q
    ||||||    
T  8299308 taaata 8299313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 352 - 428
Target Start/End: Complemental strand, 15858880 - 15858804
Alignment:
Q  352 ttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 428  Q
    |||||||||||||||| |||||||||||||| | |||||||||||||||||||||||| ||||||||||| ||||||    
T  15858880 ttttaggctataaataggcttccatcttcaacaaataccttcattcttcacatcacctcttttcttacattttcttc 15858804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 314 - 428
Target Start/End: Complemental strand, 27495261 - 27495147
Alignment:
Q  314 acacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcaccttttt 413  Q
    |||||||||  ||||||||| | || | ||| |||| |||| ||||||||||||  ||| ||||||||| |  |  ||||||||||||| |||||| |||    
T  27495261 acacgttttagttgactgtaattattacctatgactggtttaaggctataaatagactttcatcttcaacaattttcttcattcttcacttcacctcttt 27495162  T
Q  414 tcttacatattcttc 428  Q
    |||||||| ||||||    
T  27495161 tcttacattttcttc 27495147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 330 - 419
Target Start/End: Complemental strand, 23252558 - 23252469
Alignment:
Q  330 tgtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttac 419  Q
    |||| |||| || |||||||| |||||| |||||||||| ||| |||||| || | || |||||||||||||| | |||| |||||||||    
T  23252558 tgtaataattatttaggacttattttagactataaataaacttgcatcttaaacaaattccttcattcttcactttacctcttttcttac 23252469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 364 - 428
Target Start/End: Original strand, 2606076 - 2606140
Alignment:
Q  364 aataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 428  Q
    |||| |||||||||||||| | ||||||||||||||||| |||| | ||||||| ||| ||||||    
T  2606076 aataggcttccatcttcaacaaataccttcattcttcacttcacatcttttcttccattttcttc 2606140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 370 - 428
Target Start/End: Original strand, 8300864 - 8300922
Alignment:
Q  370 cttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 428  Q
    ||||||||||||| | |||||| |||||||||| |||| | ||||||||||| ||||||    
T  8300864 cttccatcttcaacaaatacctacattcttcacttcacatcttttcttacattttcttc 8300922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 325 - 427
Target Start/End: Original strand, 27690482 - 27690584
Alignment:
Q  325 ttgactgtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatatt 424  Q
    ||||||||| | ||| |||||||||  ||| |||||||||||| |||| ||||||||| |  | | |||||||||||| || | | ||||||||||| ||    
T  27690482 ttgactgtagttatggtctaggactgatttaaggctataaatatgcttgcatcttcaacaatttcattcattcttcacttcccatcttttcttacatttt 27690581  T
Q  425 ctt 427  Q
    |||    
T  27690582 ctt 27690584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 109; Significance: 1e-54; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 265 - 428
Target Start/End: Original strand, 31722857 - 31723023
Alignment:
Q  265 cggaaagattcagagccattaatatgggtttggacggttacaa---ccactaacacgttttcattgactgtattaatgatctaggacttgttttaggcta 361  Q
    ||||||||||||||||||||||| |||||||||| ||||||||   ||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  31722857 cggaaagattcagagccattaatgtgggtttggatggttacaacaaccactaacacgttttcattgactgtattaatgacctaggacttgttttaggcta 31722956  T
Q  362 taaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 428  Q
    |||||| |||||||||||||| | | ||||||||||||||| ||| || ||||||||||| ||||||    
T  31722957 taaataggcttccatcttcaacaaagaccttcattcttcacttcatctcttttcttacattttcttc 31723023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 277 - 428
Target Start/End: Complemental strand, 31318671 - 31318520
Alignment:
Q  277 gagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttccat 376  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |||| |||    
T  31318671 gagccattaatgtgggtttggacggttacaaccactaacacgttttcattgactgtagtaatgacctaggacttgttttaggctataaataggctttcat 31318572  T
Q  377 cttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 428  Q
    |||||| | ||||||||||||||||| |||||| ||||||| ||| ||||||    
T  31318571 cttcaacaaataccttcattcttcacttcacctcttttcttccattttcttc 31318520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 267 - 428
Target Start/End: Complemental strand, 31271496 - 31271335
Alignment:
Q  267 gaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaat 366  Q
    ||||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||||| ||||||||||||| ||| |||||||||||||||||||||    
T  31271496 gaaagattcagagccattaatgtgggtttggacgattacaaccacttacacgttttcattaactgtattaatgacctatgacttgttttaggctataaat 31271397  T
Q  367 aagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 428  Q
    | |||||||||||||| | |||| |||||| ||||| |||||| ||||||| ||| ||||||    
T  31271396 aggcttccatcttcaacaaatactttcatttttcacttcacctcttttcttccattttcttc 31271335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 265 - 428
Target Start/End: Original strand, 9304942 - 9305105
Alignment:
Q  265 cggaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataa 364  Q
    ||||||||||||||||||||| | ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  9304942 cggaaagattcagagccattattgtgggttttgacggttacaaccactaacacgttttcattgactgtattaatgacctaggacttgttttaggctataa 9305041  T
Q  365 ataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 428  Q
    ||| ||||  | ||| || | |||||||||||| |||| |||||| |||| || ||| ||||||    
T  9305042 ataggcttttaccttaaacaaataccttcattcatcacttcacctcttttattccattttcttc 9305105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 268 - 428
Target Start/End: Complemental strand, 439180 - 439017
Alignment:
Q  268 aaagattcagagccattaatatgggtttggacggttacaac---cactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataa 364  Q
    ||||||||| || ||||||| ||||||||||||||||||||   ||||||||||||||| |||||| || |||||| |||||||||||||||||||||||    
T  439180 aaagattcaaagtcattaatgtgggtttggacggttacaacaaccactaacacgttttcgttgactatactaatgacctaggacttgttttaggctataa 439081  T
Q  365 ataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 428  Q
    |||  ||||||||||||| | ||||||||||||||||| |||||| ||||||||||| ||||||    
T  439080 atagacttccatcttcaacaaataccttcattcttcacttcacctcttttcttacattttcttc 439017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 265 - 428
Target Start/End: Complemental strand, 16395467 - 16395301
Alignment:
Q  265 cggaaagattcagagccattaatatgggtttggacggttacaac---cactaacacgttttcattgactgtattaatgatctaggacttgttttaggcta 361  Q
    |||||| ||||| |||||||||| |||||||||| |||||||||   |||||||||||||||||||||| |||||||||  |||||||||||||||||||    
T  16395467 cggaaatattcaaagccattaatgtgggtttggatggttacaacaaccactaacacgttttcattgactatattaatgacataggacttgttttaggcta 16395368  T
Q  362 taaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 428  Q
    |||||| ||||||||| |||| | |||| |||||||||||| |||||| ||||||| ||| ||||||    
T  16395367 taaataggcttccatcgtcaacaaatactttcattcttcacttcacctcttttcttccattttcttc 16395301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 267 - 428
Target Start/End: Complemental strand, 303904 - 303740
Alignment:
Q  267 gaaagattcagagccattaatatgggtttggacggtta---caaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctata 363  Q
    |||| |||||||| ||||||| |  |||||||||||||   ||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||    
T  303904 gaaacattcagagtcattaatgtaagtttggacggttataacaaccaccaacacgttttcattgattgtattaatgacctaggacttgttttaggctata 303805  T
Q  364 aataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 428  Q
    |||| |||||||| ||||| | ||||||||||||||||| |||||| ||||||| ||| ||||||    
T  303804 aataggcttccattttcaacaaataccttcattcttcacttcacctcttttcttccattttcttc 303740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 293 - 428
Target Start/End: Complemental strand, 20818653 - 20818518
Alignment:
Q  293 tttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatatacctt 392  Q
    ||||||||||||  ||||| |||||||||||||||| |||| | ||||  || ||||| |||||| |||||||||  ||||||||||||| | || ||||    
T  20818653 tttggacggttagcaccacaaacacgttttcattgattgtacttatgacgtatgacttattttagactataaatatacttccatcttcaacaaattcctt 20818554  T
Q  393 cattcttcacatcaccttttttcttacatattcttc 428  Q
    ||||||| || |||||| ||||||||||| ||||||    
T  20818553 cattctttacttcacctcttttcttacattttcttc 20818518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 325 - 428
Target Start/End: Complemental strand, 17519942 - 17519839
Alignment:
Q  325 ttgactgtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatatt 424  Q
    ||||||||| | |||||||| |||||||||||||||||||||| | || ||| ||||||| || ||| |||||||||| ||| || ||| ||||| | ||    
T  17519942 ttgactgtagttatgatctatgacttgttttaggctataaatatgtttgcatgttcaagaaattcctccattcttcacttcatctctttccttacttttt 17519843  T
Q  425 cttc 428  Q
    ||||    
T  17519842 cttc 17519839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 325 - 427
Target Start/End: Original strand, 6837248 - 6837350
Alignment:
Q  325 ttgactgtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatatt 424  Q
    ||||||||| | |||||||||||||  ||| || ||||||||| |  |  |||||||| |  | |||||||||||||| |||||| ||||||||||| ||    
T  6837248 ttgactgtagttatgatctaggactgatttaagactataaatagggctggatcttcaataatttccttcattcttcacttcacctcttttcttacatttt 6837347  T
Q  425 ctt 427  Q
    |||    
T  6837348 ctt 6837350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1301 (Bit Score: 88; Significance: 4e-42; HSPs: 1)
Name: scaffold1301
Description:

Target: scaffold1301; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 265 - 428
Target Start/End: Complemental strand, 1804 - 1641
Alignment:
Q  265 cggaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataa 364  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||  |||||| ||||||||||||||||  || | |||||||||| ||||||    
T  1804 cggaaagattcagagccattaatgtgggtttggacggttacaaccactaacttgttttcgttgactgtattaatgacttaaggcttgttttagactataa 1705  T
Q  365 ataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 428  Q
    ||| ||||||| |||||| | ||||||||||||||||  |||||| ||||| | ||| ||||||    
T  1704 ataggcttccaacttcaacaaataccttcattcttcagttcacctattttcctccattttcttc 1641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 321 - 428
Target Start/End: Original strand, 19067 - 19174
Alignment:
Q  321 ttcattgactgtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttaca 420  Q
    ||||||||||||| | |||| ||| |||||||||||||||||||||| |||  ||||||||| | || |||||||||||||| ||| || ||||||||||    
T  19067 ttcattgactgtacttatgacctaagacttgttttaggctataaataggctctcatcttcaacaaattccttcattcttcacttcaactcttttcttaca 19166  T
Q  421 tattcttc 428  Q
    | ||||||    
T  19167 ttttcttc 19174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0160 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 337 - 433
Target Start/End: Original strand, 17301 - 17397
Alignment:
Q  337 atgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttcgacat 433  Q
    ||||||||||||||||||||||||||||||| | ||  |||||||| | || | |||||||||||| |||||| ||||||||| | |||||| ||||    
T  17301 atgatctaggacttgttttaggctataaataggtttgtatcttcaacaaattctttcattcttcacttcacctattttcttactttttcttcaacat 17397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 337 - 428
Target Start/End: Complemental strand, 51916 - 51827
Alignment:
Q  337 atgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 428  Q
    ||||||||||||||||||||||||||||||| | || ||||||||  | || ||||||||||| || |||||| ||||||||| | ||||||    
T  51916 atgatctaggacttgttttaggctataaataggtttgcatcttca--acattccttcattcttaacttcacctcttttcttactttttcttc 51827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0210 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0210
Description:

Target: scaffold0210; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 325 - 421
Target Start/End: Original strand, 8159 - 8255
Alignment:
Q  325 ttgactgtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacat 421  Q
    |||| |||||| ||||||||||||| |||| ||||||||| || ||||  ||||| || |  | |||||||||||||| |||||| |||||||||||    
T  8159 ttgattgtatttatgatctaggactggtttaaggctataactaggcttggatctttaacaatttccttcattcttcacttcacctcttttcttacat 8255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 313 - 419
Target Start/End: Original strand, 427220 - 427326
Alignment:
Q  313 aacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcacctttt 412  Q
    ||||||||||  ||||||| | | ||||||||||| | || | |||||||||||| |||| ||||||||| |  | |||||||||||||| |||||| ||    
T  427220 aacacgttttatttgactgcacttatgatctaggaatggtctaaggctataaataggcttgcatcttcaacaatttccttcattcttcacttcacctctt 427319  T
Q  413 ttcttac 419  Q
    || ||||    
T  427320 ttgttac 427326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University