View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1345_high_85 (Length: 436)

Name: NF1345_high_85
Description: NF1345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1345_high_85
NF1345_high_85
[»] chr2 (24 HSPs)
chr2 (265-421)||(44760085-44760241)
chr2 (266-421)||(6404108-6404263)
chr2 (265-421)||(15911768-15911927)
chr2 (276-417)||(13278690-13278831)
chr2 (265-421)||(17308950-17309108)
chr2 (267-421)||(30490668-30490825)
chr2 (265-421)||(38703573-38703731)
chr2 (265-417)||(17137691-17137850)
chr2 (276-417)||(31994077-31994218)
chr2 (276-417)||(1209930-1210072)
chr2 (267-380)||(45117111-45117224)
chr2 (276-417)||(7942742-7942883)
chr2 (280-417)||(18137585-18137722)
chr2 (29-116)||(44934918-44935003)
chr2 (331-421)||(38207477-38207567)
chr2 (313-421)||(21485295-21485403)
chr2 (310-399)||(1114722-1114811)
chr2 (266-335)||(38208410-38208482)
chr2 (325-419)||(33945922-33946016)
chr2 (325-419)||(37127941-37128035)
chr2 (325-418)||(21649729-21649822)
chr2 (336-421)||(16739457-16739539)
chr2 (199-238)||(44929408-44929447)
chr2 (151-185)||(44929727-44929761)
[»] chr7 (20 HSPs)
chr7 (265-421)||(35794471-35794627)
chr7 (267-421)||(46254858-46255015)
chr7 (267-417)||(14816644-14816794)
chr7 (267-417)||(15263640-15263790)
chr7 (265-421)||(34847861-34848020)
chr7 (264-417)||(43458183-43458335)
chr7 (267-417)||(25529097-25529247)
chr7 (265-421)||(33950923-33951082)
chr7 (265-421)||(36312068-36312226)
chr7 (293-408)||(1377355-1377470)
chr7 (313-421)||(1852142-1852250)
chr7 (330-430)||(42321186-42321286)
chr7 (340-417)||(44863013-44863090)
chr7 (313-421)||(19646938-19647046)
chr7 (325-419)||(31326669-31326763)
chr7 (310-413)||(26188205-26188308)
chr7 (265-308)||(44866155-44866198)
chr7 (325-419)||(1906577-1906671)
chr7 (337-419)||(3601033-3601115)
chr7 (346-400)||(35585120-35585174)
[»] chr3 (26 HSPs)
chr3 (265-421)||(47646909-47647068)
chr3 (268-421)||(47013707-47013860)
chr3 (276-417)||(6936464-6936605)
chr3 (265-421)||(10509207-10509366)
chr3 (276-417)||(32529796-32529937)
chr3 (265-421)||(36402696-36402855)
chr3 (264-417)||(40937214-40937367)
chr3 (265-417)||(149323-149475)
chr3 (273-417)||(227626-227770)
chr3 (265-428)||(39586559-39586722)
chr3 (265-417)||(26502177-26502332)
chr3 (276-417)||(41193717-41193858)
chr3 (276-417)||(39353294-39353435)
chr3 (276-417)||(49166110-49166250)
chr3 (281-417)||(31765207-31765343)
chr3 (310-421)||(41174802-41174913)
chr3 (293-421)||(33843509-33843637)
chr3 (337-421)||(42899210-42899294)
chr3 (337-421)||(51328989-51329073)
chr3 (337-419)||(25214595-25214677)
chr3 (265-308)||(41182006-41182049)
chr3 (340-400)||(44207641-44207701)
chr3 (346-402)||(53393957-53394013)
chr3 (313-400)||(21979926-21980013)
chr3 (313-400)||(22002357-22002444)
chr3 (359-421)||(10494800-10494862)
[»] chr4 (34 HSPs)
chr4 (265-421)||(40728019-40728175)
chr4 (265-421)||(45229063-45229219)
chr4 (266-421)||(28780765-28780920)
chr4 (265-417)||(35158716-35158868)
chr4 (267-417)||(33281083-33281233)
chr4 (265-421)||(52416919-52417078)
chr4 (265-421)||(16023866-16024022)
chr4 (265-417)||(31093103-31093255)
chr4 (265-417)||(1602781-1602932)
chr4 (265-417)||(45462248-45462400)
chr4 (276-417)||(2013733-2013874)
chr4 (276-417)||(4189874-4190015)
chr4 (276-417)||(38551270-38551411)
chr4 (265-417)||(49374315-49374466)
chr4 (265-417)||(51538642-51538794)
chr4 (265-417)||(30003608-30003762)
chr4 (276-417)||(4048130-4048271)
chr4 (276-417)||(168540-168681)
chr4 (276-417)||(6963451-6963592)
chr4 (292-417)||(16451927-16452052)
chr4 (268-421)||(55136658-55136814)
chr4 (268-428)||(9036089-9036251)
chr4 (276-417)||(15542841-15542981)
chr4 (276-417)||(45924595-45924736)
chr4 (265-421)||(38218251-38218410)
chr4 (265-421)||(43841863-43842022)
chr4 (265-394)||(56463635-56463767)
chr4 (276-414)||(28310890-28311029)
chr4 (276-417)||(35319896-35320037)
chr4 (337-421)||(39807338-39807422)
chr4 (313-419)||(34953601-34953707)
chr4 (337-419)||(40602736-40602818)
chr4 (313-401)||(20516682-20516770)
chr4 (337-419)||(56084107-56084189)
[»] chr1 (29 HSPs)
chr1 (265-421)||(42882579-42882735)
chr1 (265-418)||(37952296-37952449)
chr1 (276-417)||(41091164-41091305)
chr1 (276-417)||(50261992-50262133)
chr1 (265-417)||(44496482-44496634)
chr1 (264-421)||(29961390-29961547)
chr1 (276-417)||(38860673-38860814)
chr1 (276-417)||(41086396-41086537)
chr1 (276-417)||(41900288-41900429)
chr1 (266-421)||(12700526-12700684)
chr1 (265-421)||(14587326-14587488)
chr1 (276-417)||(12528442-12528583)
chr1 (266-421)||(33801356-33801514)
chr1 (278-428)||(52632362-52632512)
chr1 (276-417)||(11952421-11952562)
chr1 (276-417)||(49851705-49851846)
chr1 (265-421)||(3517564-3517720)
chr1 (292-417)||(27216795-27216920)
chr1 (276-417)||(23984039-23984177)
chr1 (268-417)||(41723525-41723676)
chr1 (326-421)||(44757581-44757676)
chr1 (268-334)||(48964920-48964986)
chr1 (337-419)||(34549849-34549931)
chr1 (370-421)||(22858750-22858801)
chr1 (265-312)||(22858800-22858847)
chr1 (360-421)||(48964984-48965045)
chr1 (313-372)||(29913869-29913928)
chr1 (343-402)||(30518205-30518264)
chr1 (346-400)||(22334962-22335016)
[»] chr8 (21 HSPs)
chr8 (265-417)||(8239976-8240128)
chr8 (265-417)||(39318584-39318736)
chr8 (265-417)||(35684004-35684156)
chr8 (265-417)||(40105238-40105390)
chr8 (276-417)||(43098545-43098686)
chr8 (276-417)||(6347292-6347433)
chr8 (264-417)||(11076225-11076378)
chr8 (276-417)||(37098330-37098471)
chr8 (265-421)||(39260278-39260437)
chr8 (276-417)||(32337807-32337948)
chr8 (276-407)||(20091867-20091998)
chr8 (276-417)||(31701047-31701185)
chr8 (276-417)||(23144107-23144249)
chr8 (276-417)||(627371-627512)
chr8 (293-417)||(586428-586552)
chr8 (310-421)||(32947072-32947183)
chr8 (265-308)||(42131889-42131932)
chr8 (316-415)||(28284449-28284548)
chr8 (276-326)||(13546259-13546309)
chr8 (276-326)||(13678164-13678214)
chr8 (339-422)||(11457017-11457100)
[»] chr5 (23 HSPs)
chr5 (265-421)||(8734687-8734842)
chr5 (265-417)||(27114301-27114453)
chr5 (268-417)||(37012821-37012970)
chr5 (264-421)||(13822057-13822217)
chr5 (265-421)||(8197401-8197560)
chr5 (265-421)||(12785147-12785306)
chr5 (276-417)||(37030261-37030402)
chr5 (268-421)||(18808974-18809130)
chr5 (265-421)||(12723664-12723823)
chr5 (265-417)||(3556618-3556770)
chr5 (276-417)||(26279031-26279172)
chr5 (276-417)||(37883421-37883562)
chr5 (265-421)||(38679438-38679597)
chr5 (276-417)||(25977135-25977272)
chr5 (291-417)||(9715327-9715453)
chr5 (276-417)||(11719938-11720080)
chr5 (267-417)||(16513581-16513733)
chr5 (265-367)||(8299208-8299313)
chr5 (352-421)||(15858811-15858880)
chr5 (330-419)||(23252469-23252558)
chr5 (314-421)||(27495154-27495261)
chr5 (364-417)||(2606076-2606129)
chr5 (325-421)||(27690482-27690578)
[»] chr6 (10 HSPs)
chr6 (265-421)||(31722857-31723016)
chr6 (277-417)||(31318531-31318671)
chr6 (267-417)||(31271346-31271496)
chr6 (265-414)||(9304942-9305091)
chr6 (268-421)||(439024-439180)
chr6 (265-417)||(16395312-16395467)
chr6 (267-417)||(303751-303904)
chr6 (293-421)||(20818525-20818653)
chr6 (325-419)||(17519848-17519942)
chr6 (325-421)||(6837248-6837344)
[»] scaffold1301 (1 HSPs)
scaffold1301 (265-415)||(1654-1804)
[»] scaffold0054 (1 HSPs)
scaffold0054 (321-421)||(19067-19167)
[»] scaffold0160 (1 HSPs)
scaffold0160 (337-419)||(17301-17383)
[»] scaffold0048 (1 HSPs)
scaffold0048 (337-419)||(51836-51916)
[»] scaffold0210 (1 HSPs)
scaffold0210 (325-421)||(8159-8255)
[»] scaffold0001 (1 HSPs)
scaffold0001 (313-419)||(427220-427326)


Alignment Details
Target: chr2 (Bit Score: 141; Significance: 9e-74; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 265 - 421
Target Start/End: Complemental strand, 44760241 - 44760085
Alignment:
Q  265 cggaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataa 364  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  44760241 cggaaagattcagagccattaatgtgggtttggacggttacaaccactaacacgttttcattgactgtattaatgacctaggacttgttttaggctataa 44760142  T
Q  365 ataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacat 421  Q
    |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||    
T  44760141 ataagcttccatcttcaagatataccttcattattcacatcacctcttttcttacat 44760085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 266 - 421
Target Start/End: Complemental strand, 6404263 - 6404108
Alignment:
Q  266 ggaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaa 365  Q
    ||||||||| ||||||||||||  |||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||    
T  6404263 ggaaagatttagagccattaatgcgggtttggacggttacaaccactaacacgttttcgttgaccgtattaatgacctaggacttgttttaggctataaa 6404164  T
Q  366 taagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacat 421  Q
    || |||||||||||||| | |||||||||||||||||||||||| |||||||||||    
T  6404163 taggcttccatcttcaacaaataccttcattcttcacatcacctcttttcttacat 6404108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 265 - 421
Target Start/End: Complemental strand, 15911927 - 15911768
Alignment:
Q  265 cggaaagattcagagccattaatatgggtttggacggttacaac---cactaacacgttttcattgactgtattaatgatctaggacttgttttaggcta 361  Q
    ||||||||||||||||||||||| ||||||||||||||||||||   ||||||||| |||||||||||||||||||||| ||||||||||||||||||||    
T  15911927 cggaaagattcagagccattaatgtgggtttggacggttacaacaaccactaacacattttcattgactgtattaatgacctaggacttgttttaggcta 15911828  T
Q  362 taaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacat 421  Q
    |||||| |||||||||||||| | ||||||| ||||||||| |||||| |||||||||||    
T  15911827 taaataggcttccatcttcaacaaataccttgattcttcacttcacctcttttcttacat 15911768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 276 - 417
Target Start/End: Complemental strand, 13278831 - 13278690
Alignment:
Q  276 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 375  Q
    |||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||| |||||||    
T  13278831 agagccattaatgtggggttggacggttacaaccactaacacgttttcattgactgtattaatgacaaaggacttgttttaggctataaataggcttcca 13278732  T
Q  376 tcttcaagatataccttcattcttcacatcaccttttttctt 417  Q
    ||||||| | ||||||||||||||||| |||||| |||||||    
T  13278731 tcttcaacaaataccttcattcttcacttcacctcttttctt 13278690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 265 - 421
Target Start/End: Complemental strand, 17309108 - 17308950
Alignment:
Q  265 cggaaagattcagagccattaatatgggtttggacggttacaac---cactaacacgttttcattgactgtattaatgatctaggacttgttttaggcta 361  Q
    ||||||||||||||||||||||| ||||||||||||||||||||   |||||||||||||||||||||||||||||||| ||| |||||||||| |||||    
T  17309108 cggaaagattcagagccattaatgtgggtttggacggttacaacaaccactaacacgttttcattgactgtattaatgacctatgacttgttttcggcta 17309009  T
Q  362 taaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacat 421  Q
    |||||| |||||||||||| | | ||||||||||||||||| |||||| |||||||||||    
T  17309008 taaataggcttccatcttc-acaaataccttcattcttcacttcacctcttttcttacat 17308950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 267 - 421
Target Start/End: Original strand, 30490668 - 30490825
Alignment:
Q  267 gaaagattcagagccattaatatgggtttggacggttacaa---ccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctata 363  Q
    ||||||||||||||||||||| |||||||||||||||||||   ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||    
T  30490668 gaaagattcagagccattaatgtgggtttggacggttacaacaaccactaacacgttttcattgactgtattaatgacctaggacttgttttaggccata 30490767  T
Q  364 aataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacat 421  Q
    |||| |||| ||||||||| | |||||| |||||||||| ||| || |||||||||||    
T  30490768 aataggctttcatcttcaacaaatacctacattcttcacctcagctcttttcttacat 30490825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 265 - 421
Target Start/End: Original strand, 38703573 - 38703731
Alignment:
Q  265 cggaaagattcagagccattaatatgggtttggacggttacaa---ccactaacacgttttcattgactgtattaatgatctaggacttgttttaggcta 361  Q
    ||||||||||||||| ||||||| |||||||||||||||||||   ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||    
T  38703573 cggaaagattcagagtcattaatgtgggtttggacggttacaacaaccactaacacgttttcattgactgtattaatgacctaggacttcttttaggcta 38703672  T
Q  362 taaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacat 421  Q
    |||||  |||||||||||||| | ||||||| ||||||||| |||||| |||||||||||    
T  38703673 taaat-ggcttccatcttcaacaaatacctttattcttcacttcacctcttttcttacat 38703731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 265 - 417
Target Start/End: Original strand, 17137691 - 17137850
Alignment:
Q  265 cggaaagattcagagccattaatatgggtttggacggttacaa---ccactaacacgttttcattgactgtattaatgatctaggacttgttttaggcta 361  Q
    |||||| ||| |||||||||||| |||||||||||||||||||   ||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  17137691 cggaaacatttagagccattaatgtgggtttggacggttacaacaaccactaacacgttttcattgactgtattaatgacctaggacttgttttaggcta 17137790  T
Q  362 taaataa----gcttccatcttcaagatataccttcattcttcacatcaccttttttctt 417  Q
    |||||||    ||||| |||||||| | ||||||||||||||||| |||||| |||||||    
T  17137791 taaataaacaggcttctatcttcaacaaataccttcattcttcacttcacctcttttctt 17137850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 276 - 417
Target Start/End: Original strand, 31994077 - 31994218
Alignment:
Q  276 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 375  Q
    |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| | |||||    
T  31994077 agagccattaatgtaggtttggacggttacaaccactaacacgttttcattgactgtagtaatgacctaggacttgttttaggctataaataggtttcca 31994176  T
Q  376 tcttcaagatataccttcattcttcacatcaccttttttctt 417  Q
    | ||||| | ||| |||||||| |||| |||||| |||||||    
T  31994177 tattcaacaaatatcttcattcatcacttcacctcttttctt 31994218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 276 - 417
Target Start/End: Original strand, 1209930 - 1210072
Alignment:
Q  276 agagccattaa-tatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcc 374  Q
    ||||||||||| | |||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||| ||||||    
T  1209930 agagccattaaatgtgggtttggacggttacaaccactaacacgttttcattgactttattaatgacctaggacttgttttaagctataaataggcttcc 1210029  T
Q  375 atcttcaagatataccttcattcttcacatcaccttttttctt 417  Q
    |||||| | | |||||| |||||||||| |||| | |||||||    
T  1210030 atcttcgacaaatacctgcattcttcacttcacatcttttctt 1210072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 267 - 380
Target Start/End: Complemental strand, 45117224 - 45117111
Alignment:
Q  267 gaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaat 366  Q
    ||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||    
T  45117224 gaaagattcagagccgttaatgtggatttggacggttacaaccactaacacgttttcattgactctattaatgacctaagacttgttttaggctataaat 45117125  T
Q  367 aagcttccatcttc 380  Q
    | ||||||||||||    
T  45117124 aggcttccatcttc 45117111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 276 - 417
Target Start/End: Original strand, 7942742 - 7942883
Alignment:
Q  276 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 375  Q
    |||||||||||| | |||||||||||||||||||||||||| |||||||||||||||| ||| || ||||||||||||||| |||||||| |  ||||||    
T  7942742 agagccattaatgtaggtttggacggttacaaccactaacatgttttcattgactgtagtaaggacctaggacttgttttatgctataaacagacttcca 7942841  T
Q  376 tcttcaagatataccttcattcttcacatcaccttttttctt 417  Q
    ||||||| | ||||||||||| ||||| |||||| |||||||    
T  7942842 tcttcaacaaataccttcattgttcacttcacctcttttctt 7942883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 280 - 417
Target Start/End: Complemental strand, 18137722 - 18137585
Alignment:
Q  280 ccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttccatctt 379  Q
    |||||||| | |||| ||||||||||||||||||||||||||||||||| |||| |||||| ||||||||| |||||||||||||||| ||||  |||||    
T  18137722 ccattaatgtaggttgggacggttacaaccactaacacgttttcattgattgtactaatgacctaggacttattttaggctataaataggcttttatctt 18137623  T
Q  380 caagatataccttcattcttcacatcaccttttttctt 417  Q
    ||| | ||||||||||||||||| ||| ||||||||||    
T  18137622 caacaaataccttcattcttcacttcatcttttttctt 18137585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 29 - 116
Target Start/End: Complemental strand, 44935003 - 44934918
Alignment:
Q  29 atgtcattcccggtggaactcatgtatgtagctaaagaagtctattctagagctatacaaaaccaaatgaaattcaagccacagattc 116  Q
    |||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44935003 atgtcattcccggtggaacc--tgtatgtagctaaagaagtctattctagagctatacaaaaccaaatgaaattcaagccacagattc 44934918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 331 - 421
Target Start/End: Complemental strand, 38207567 - 38207477
Alignment:
Q  331 gtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacat 421  Q
    |||||||||| |||||||||||||||||||||||||| |||| ||||||||| | ||||||||||||||||| |||||| |||||||||||    
T  38207567 gtattaatgacctaggacttgttttaggctataaatatgcttacatcttcaacaaataccttcattcttcacttcacctcttttcttacat 38207477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 313 - 421
Target Start/End: Original strand, 21485295 - 21485403
Alignment:
Q  313 aacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcacctttt 412  Q
    |||||||||| ||||| |||| | |||| ||||||||||||||||||||||||||||||| ||| ||||| | || | |||||||||||| |||||| ||    
T  21485295 aacacgtttttattgattgtacttatgacctaggacttgttttaggctataaataagctttcatattcaacaaattctttcattcttcacttcacctctt 21485394  T
Q  413 ttcttacat 421  Q
    |||||||||    
T  21485395 ttcttacat 21485403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 310 - 399
Target Start/End: Complemental strand, 1114811 - 1114722
Alignment:
Q  310 actaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattctt 399  Q
    ||||| ||||||||||||||| || |||||| ||||||||||||||| |||||||||| |||| ||||||||| | ||||||||||||||    
T  1114811 actaatacgttttcattgactatactaatgacctaggacttgttttaagctataaataggctttcatcttcaacaaataccttcattctt 1114722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 266 - 335
Target Start/End: Complemental strand, 38208482 - 38208410
Alignment:
Q  266 ggaaagattcagagccattaatatgggtttggacggtt---acaaccactaacacgttttcattgactgtatt 335  Q
    |||||||||||||||||||||| |||||||||||||||   |||||||||||||||||||||||||| |||||    
T  38208482 ggaaagattcagagccattaatgtgggtttggacggttgcaacaaccactaacacgttttcattgaccgtatt 38208410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 325 - 419
Target Start/End: Complemental strand, 33946016 - 33945922
Alignment:
Q  325 ttgactgtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttac 419  Q
    ||||||||| | ||||||||||||||||||||||||||| ||| | || ||||||||| | || |||||||||||||| |||||  |||||||||    
T  33946016 ttgactgtagttatgatctaggacttgttttaggctatatataggtttgcatcttcaacaaattccttcattcttcacttcaccacttttcttac 33945922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 325 - 419
Target Start/End: Original strand, 37127941 - 37128035
Alignment:
Q  325 ttgactgtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttac 419  Q
    ||||||||||| || || |||||||||||||||||||||||||||||| ||| || || | || | |||||||||||| |||||| |||||||||    
T  37127941 ttgactgtatttatcatataggacttgttttaggctataaataagcttgcatttttaacaaattctttcattcttcacttcacctattttcttac 37128035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 325 - 418
Target Start/End: Original strand, 21649729 - 21649822
Alignment:
Q  325 ttgactgtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcaccttttttctta 418  Q
    ||||||||| | || ||||||||||||||| ||||||||||||  ||||||||||||  | ||  ||||||||||||| |||||||||||||||    
T  21649729 ttgactgtagttataatctaggacttgtttaaggctataaatagtcttccatcttcatcaaatttcttcattcttcacttcaccttttttctta 21649822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 336 - 421
Target Start/End: Original strand, 16739457 - 16739539
Alignment:
Q  336 aatgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacat 421  Q
    ||||| |||||||||||||||||||||||| | ||||  |||||||| || | |||| |||||||   |||||| |||||||||||    
T  16739457 aatgacctaggacttgttttaggctataaaaaggcttggatcttcaacattttcctttattcttc---tcacctcttttcttacat 16739539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 199 - 238
Target Start/End: Complemental strand, 44929447 - 44929408
Alignment:
Q  199 aaatgatgtgtccaaatacttatgaccagttaggactttc 238  Q
    ||||||||||||||||||||| ||| ||||||||||||||    
T  44929447 aaatgatgtgtccaaatacttgtgatcagttaggactttc 44929408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 151 - 185
Target Start/End: Complemental strand, 44929761 - 44929727
Alignment:
Q  151 atattgctttctttttgtaagtaaattgatataga 185  Q
    |||||||||||||||||||||||||||||| ||||    
T  44929761 atattgctttctttttgtaagtaaattgatttaga 44929727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 121; Significance: 8e-62; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 265 - 421
Target Start/End: Complemental strand, 35794627 - 35794471
Alignment:
Q  265 cggaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataa 364  Q
    |||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  35794627 cggaaagatttagagccattaatatggatttggacggttacaaccactaacacgttttcattgactgtattaatgacctatgacttgttttaggctataa 35794528  T
Q  365 ataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacat 421  Q
    ||| |||||||||||||| | ||||||||||||||||||||| || |||||||||||    
T  35794527 ataggcttccatcttcaacaaataccttcattcttcacatcagctcttttcttacat 35794471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 267 - 421
Target Start/End: Complemental strand, 46255015 - 46254858
Alignment:
Q  267 gaaagattcagagccattaatatgggtttggacggttacaac---cactaacacgttttcattgactgtattaatgatctaggacttgttttaggctata 363  Q
    ||||||||||||||||||||| ||||||||||||||||||||   |||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  46255015 gaaagattcagagccattaatgtgggtttggacggttacaacaaccactaacacgttttcattgactgtattaatgacctaggacttgttttaggctata 46254916  T
Q  364 aataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacat 421  Q
    |||| |||||||||||||| | ||||||||||||||||| |||||| |||||||||||    
T  46254915 aataggcttccatcttcaacaaataccttcattcttcacttcacctcttttcttacat 46254858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 267 - 417
Target Start/End: Original strand, 14816644 - 14816794
Alignment:
Q  267 gaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaat 366  Q
    ||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||    
T  14816644 gaaagatccagagccattaatgtgggtttggacggttacaaccactaacacgttttcattgactgtattaatgacctaggacttgttttagcctataaat 14816743  T
Q  367 aagcttccatcttcaagatataccttcattcttcacatcaccttttttctt 417  Q
    | |||||||||||||| | ||||||||||||||||| |||||| |||||||    
T  14816744 aggcttccatcttcaacaaataccttcattcttcacttcacctcttttctt 14816794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 267 - 417
Target Start/End: Original strand, 15263640 - 15263790
Alignment:
Q  267 gaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaat 366  Q
    ||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||    
T  15263640 gaaagatccagagccattaatgtgggtttggacggttacaaccactaacacgttttcattgactgtattaatgacctaggacttgttttagcctataaat 15263739  T
Q  367 aagcttccatcttcaagatataccttcattcttcacatcaccttttttctt 417  Q
    | |||||||||||||| | ||||||||||||||||| |||||| |||||||    
T  15263740 aggcttccatcttcaacaaataccttcattcttcacttcacctcttttctt 15263790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 265 - 421
Target Start/End: Original strand, 34847861 - 34848020
Alignment:
Q  265 cggaaagattcagagccattaatatgggtttggacggttacaa---ccactaacacgttttcattgactgtattaatgatctaggacttgttttaggcta 361  Q
    ||||||||||||||||||||||| ||||||||||| |||||||   ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  34847861 cggaaagattcagagccattaatgtgggtttggacagttacaacaaccactaacacgttttcattgactgtattaatgacctaggacttgttttatgcta 34847960  T
Q  362 taaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacat 421  Q
    |||||| |||||||||||||| | ||||||||||||||||| |||||| |||||||||||    
T  34847961 taaataggcttccatcttcaacagataccttcattcttcacttcacctcttttcttacat 34848020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 264 - 417
Target Start/End: Complemental strand, 43458335 - 43458183
Alignment:
Q  264 tcggaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctata 363  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  43458335 tcggaaagattcagagccattaatgtgggtttggacggttacaaccactaacacgttttcattgactgtattaatgacataggacttgttttaggctata 43458236  T
Q  364 aataagcttccatcttcaagatataccttcattcttcacatcaccttttttctt 417  Q
    |||| || | ||||||||| | ||||||||||||||||| |||||| |||||||    
T  43458235 aataggc-tacatcttcaacaaataccttcattcttcacttcacctcttttctt 43458183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 267 - 417
Target Start/End: Original strand, 25529097 - 25529247
Alignment:
Q  267 gaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaat 366  Q
    ||||||||||||| ||||||| |||||||||||||||||||||||| |||||| |||||||| ||||||||||| |||||||||||||||||||||||||    
T  25529097 gaaagattcagagtcattaatgtgggtttggacggttacaaccactgacacgtattcattgattgtattaatgacctaggacttgttttaggctataaat 25529196  T
Q  367 aagcttccatcttcaagatataccttcattcttcacatcaccttttttctt 417  Q
    | |||||||||||||| | ||||||||||||||||| |||||| |||||||    
T  25529197 aggcttccatcttcaacaaataccttcattcttcacttcacctcttttctt 25529247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 265 - 421
Target Start/End: Complemental strand, 33951082 - 33950923
Alignment:
Q  265 cggaaagattcagagccattaatatgggtttggacggttacaac---cactaacacgttttcattgactgtattaatgatctaggacttgttttaggcta 361  Q
    ||||| ||||||||||||||||| |||||||||| |||||||||   |||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  33951082 cggaacgattcagagccattaatgtgggtttggatggttacaacaaccactaacacgttttcattgactgtattaatgacctaggacttgttttaggcta 33950983  T
Q  362 taaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacat 421  Q
    |||||||| ||| |||||||| | ||||||| ||||||||| | |||| |||||||||||    
T  33950982 taaataagtttctatcttcaacaaatacctttattcttcactttacctcttttcttacat 33950923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 265 - 421
Target Start/End: Original strand, 36312068 - 36312226
Alignment:
Q  265 cggaaagattcagagccattaatatgggtttggacggttacaa---ccactaacacgttttcattgactgtattaatgatctaggacttgttttaggcta 361  Q
    ||||||||||||||||||||||| |||||||||||||||||||   ||||||||||||||| ||||||||||||||||| |||| |||||||||||||||    
T  36312068 cggaaagattcagagccattaatgtgggtttggacggttacaacaaccactaacacgtttttattgactgtattaatgacctagaacttgttttaggcta 36312167  T
Q  362 taaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacat 421  Q
    | ||||  ||||||||||||| | ||| ||||||| ||||| |||||| |||||||||||    
T  36312168 t-aatagacttccatcttcaacaaatatcttcattgttcacttcacctcttttcttacat 36312226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 293 - 408
Target Start/End: Complemental strand, 1377470 - 1377355
Alignment:
Q  293 tttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatatacctt 392  Q
    |||||| |||||  ||||| ||||||||||||||||||||| | ||||  || ||||| |||||||||||||||| |||||||||||||| | ||  |||    
T  1377470 tttggatggttagcaccacaaacacgttttcattgactgtacttatgacatatgacttattttaggctataaataggcttccatcttcaacaaatttctt 1377371  T
Q  393 cattcttcacatcacc 408  Q
    |||||||||| |||||    
T  1377370 cattcttcacttcacc 1377355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 313 - 421
Target Start/End: Complemental strand, 1852250 - 1852142
Alignment:
Q  313 aacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcacctttt 412  Q
    |||||||||||||||| |||| | |||| |||||  ||||||||||||||| |||||||| |||||| || | |  |||||||||||||| |||||| ||    
T  1852250 aacacgttttcattgattgtacttatgacctaggtattgttttaggctatatataagcttgcatcttgaacaaagtccttcattcttcacttcacctctt 1852151  T
Q  413 ttcttacat 421  Q
    |||||||||    
T  1852150 ttcttacat 1852142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 330 - 430
Target Start/End: Original strand, 42321186 - 42321286
Alignment:
Q  330 tgtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattattcg 429  Q
    ||||||||| | ||| ||||||||||||| |||||||| |||||||||||||| | ||| ||||||||||||| |||||| ||||||| ||| || ||||    
T  42321186 tgtattaataacctatgacttgttttaggttataaataggcttccatcttcaacaaatatcttcattcttcacttcacctcttttcttccattttcttcg 42321285  T
Q  430 a 430  Q
    |    
T  42321286 a 42321286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 340 - 417
Target Start/End: Complemental strand, 44863090 - 44863013
Alignment:
Q  340 atctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcaccttttttctt 417  Q
    ||||||||||||||||| |||||||||| ||||| ||||| || | ||||||||||||||||| |||||| |||||||    
T  44863090 atctaggacttgttttaagctataaatatgcttcaatcttgaacaaataccttcattcttcacttcacctcttttctt 44863013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 313 - 421
Target Start/End: Complemental strand, 19647046 - 19646938
Alignment:
Q  313 aacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcacctttt 412  Q
    ||||||||||  ||||||||| | ||||||||||||| |||| || ||||||||| ||||  |||||||| |  | ||||||||||| || |||||| ||    
T  19647046 aacacgttttacttgactgtaattatgatctaggactggtttaagactataaatatgcttgaatcttcaacaatttccttcattctttacttcacctctt 19646947  T
Q  413 ttcttacat 421  Q
    |||||||||    
T  19646946 ttcttacat 19646938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 325 - 419
Target Start/End: Original strand, 31326669 - 31326763
Alignment:
Q  325 ttgactgtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttac 419  Q
    ||||||||| | ||||| ||||||||||||||  ||||||||| | || ||||||||| | ||  ||||||||||||| |||||| |||||||||    
T  31326669 ttgactgtaattatgatttaggacttgttttatactataaataggtttgcatcttcaacaaatttcttcattcttcacttcacctcttttcttac 31326763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 310 - 413
Target Start/End: Original strand, 26188205 - 26188308
Alignment:
Q  310 actaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcacct 409  Q
    ||||||| |||||  |||| |||| | |||| ||||||| ||||||||| |||||||| || | ||| ||||| | || |||||||||||||| ||||||    
T  26188205 actaacatgttttgcttgattgtacttatgacctaggacatgttttaggttataaataggcatgcatgttcaacaaattccttcattcttcacttcacct 26188304  T
Q  410 tttt 413  Q
    ||||    
T  26188305 tttt 26188308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 265 - 308
Target Start/End: Complemental strand, 44866198 - 44866155
Alignment:
Q  265 cggaaagattcagagccattaatatgggtttggacggttacaac 308  Q
    ||||||||||||||||||||| | ||||||||||||||||||||    
T  44866198 cggaaagattcagagccattattgtgggtttggacggttacaac 44866155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 325 - 419
Target Start/End: Original strand, 1906577 - 1906671
Alignment:
Q  325 ttgactgtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttac 419  Q
    ||||||||| |  ||||||||||| ||||| || ||||||||| ||||  |||||||| |  | ||| |||||||||| |||||| |||||||||    
T  1906577 ttgactgtagttgtgatctaggacatgtttaagactataaataggcttgaatcttcaacaagttcctgcattcttcacttcacctcttttcttac 1906671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 419
Target Start/End: Original strand, 3601033 - 3601115
Alignment:
Q  337 atgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttac 419  Q
    |||||| |||| |||||||||||||||||||  ||| ||||||||| | ||  |||| |||||||| ||| || |||||||||    
T  3601033 atgatcaaggatttgttttaggctataaatagacttgcatcttcaacaaatttcttcgttcttcacttcaactcttttcttac 3601115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 346 - 400
Target Start/End: Original strand, 35585120 - 35585174
Alignment:
Q  346 gacttgttttaggctataaataagcttccatcttcaagatataccttcattcttc 400  Q
    |||||||||||||||||||| ||||||  |||||||| || | ||||||||||||    
T  35585120 gacttgttttaggctataaaaaagcttggatcttcaacattttccttcattcttc 35585174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 118; Significance: 5e-60; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 265 - 421
Target Start/End: Complemental strand, 47647068 - 47646909
Alignment:
Q  265 cggaaagattcagagccattaatatgggtttggacggttacaac---cactaacacgttttcattgactgtattaatgatctaggacttgttttaggcta 361  Q
    ||||||||||||||||||||||| ||||||||||||||||||||   |||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  47647068 cggaaagattcagagccattaatgtgggtttggacggttacaacaaccactaacacgttttcattgactgtattaatgacctaggacttgttttaggcta 47646969  T
Q  362 taaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacat 421  Q
    |||||| |||||||||||||| | ||||||||||||||||| |||||| |||||||||||    
T  47646968 taaataggcttccatcttcaacaaataccttcattcttcacttcacctcttttcttacat 47646909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 268 - 421
Target Start/End: Original strand, 47013707 - 47013860
Alignment:
Q  268 aaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaata 367  Q
    |||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||    
T  47013707 aaagattcagagccattaatgtgggtttggatggttacaaccactaacacgttttcattgaccgtattaatgacctaggacttgttttaggctataaata 47013806  T
Q  368 agcttccatcttcaagatataccttcattcttcacatcaccttttttcttacat 421  Q
     | |||||||||||| | ||||||||||||||||| |||||| |||||||||||    
T  47013807 ggtttccatcttcaacaaataccttcattcttcacttcacctcttttcttacat 47013860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 276 - 417
Target Start/End: Complemental strand, 6936605 - 6936464
Alignment:
Q  276 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 375  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| |||||||    
T  6936605 agagccattaatatgggtttgggcggttacaaccactaacacgttttcattgactgtattaatgacttaggacttgttttaggctataaataggcttcca 6936506  T
Q  376 tcttcaagatataccttcattcttcacatcaccttttttctt 417  Q
    ||||||| | |||| |||||||||||| ||||||||||||||    
T  6936505 tcttcaacaaatacattcattcttcacttcaccttttttctt 6936464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 265 - 421
Target Start/End: Original strand, 10509207 - 10509366
Alignment:
Q  265 cggaaagattcagagccattaatatgggtttggacggttacaa---ccactaacacgttttcattgactgtattaatgatctaggacttgttttaggcta 361  Q
    ||||||||||||||||||||||| |||||||||||||||||||   ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||    
T  10509207 cggaaagattcagagccattaatgtgggtttggacggttacaacaaccactaacacgttttcattgactgtattaatgacctaggacttcttttaggcta 10509306  T
Q  362 taaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacat 421  Q
    |||||| ||||| |||||||| | ||||||||||||||||| |||||| |||||||||||    
T  10509307 taaataggcttctatcttcaacaaataccttcattcttcacttcacctcttttcttacat 10509366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 276 - 417
Target Start/End: Complemental strand, 32529937 - 32529796
Alignment:
Q  276 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 375  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| |||||||    
T  32529937 agagccattaatgtgggtttggacggttacaaccactaacacgttttcattaactgtattaatgacctaggacttgttttaggctataaataggcttcca 32529838  T
Q  376 tcttcaagatataccttcattcttcacatcaccttttttctt 417  Q
    ||||||| | ||||||||||||||||| |||||| |||||||    
T  32529837 tcttcaacaaataccttcattcttcacttcacctcttttctt 32529796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 265 - 421
Target Start/End: Original strand, 36402696 - 36402855
Alignment:
Q  265 cggaaagattcagagccattaatatgggtttggacggttacaa---ccactaacacgttttcattgactgtattaatgatctaggacttgttttaggcta 361  Q
    ||||||||||||||| ||||||| |||||||||||||||||||   ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||    
T  36402696 cggaaagattcagagtcattaatgtgggtttggacggttacaacaaccactaacacgttttcattgactgtattaatgacctaggacttgttttaggtta 36402795  T
Q  362 taaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacat 421  Q
    |||||| |||||||||||||| | ||||||||||||||||| |||||| |||||||||||    
T  36402796 taaataggcttccatcttcaacaaataccttcattcttcacttcacctcttttcttacat 36402855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 264 - 417
Target Start/End: Complemental strand, 40937367 - 40937214
Alignment:
Q  264 tcggaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctata 363  Q
    |||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||    
T  40937367 tcggaaagattcagagtctttaatgtgggtttggacggttacaaccactaacacgttttcattgactgtattaatgacctaggatttgttttaggctata 40937268  T
Q  364 aataagcttccatcttcaagatataccttcattcttcacatcaccttttttctt 417  Q
    |||| |||||||||||||| | |||| |||||| ||||| |||||| |||||||    
T  40937267 aataggcttccatcttcaacaaatactttcatttttcacttcacctcttttctt 40937214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 265 - 417
Target Start/End: Complemental strand, 149475 - 149323
Alignment:
Q  265 cggaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataa 364  Q
    ||||||||||||||| ||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  149475 cggaaagattcagagtcattaacgtgggtttggacggttacaaccactaacacgttttcattgactgtattaatgacctatgacttgttttaggctataa 149376  T
Q  365 ataagcttccatcttcaagatataccttcattcttcacatcaccttttttctt 417  Q
    ||| |||||||||||||| | |||| | |||||||||| |||||| |||||||    
T  149375 ataggcttccatcttcaacaaatacttacattcttcacttcacctcttttctt 149323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 273 - 417
Target Start/End: Complemental strand, 227770 - 227626
Alignment:
Q  273 ttcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagctt 372  Q
    |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  |||    
T  227770 ttcagagccattgatgtgggtttggacggttacaaccactaacacgttttcattgactgtattaatgacctaggacttgttttaggctataaatagactt 227671  T
Q  373 ccatcttcaagatataccttcattcttcacatcaccttttttctt 417  Q
    ||||||| || | ||||||||||||||||| |||||| |||||||    
T  227670 ccatctttaacaaataccttcattcttcacttcacctcttttctt 227626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 265 - 428
Target Start/End: Complemental strand, 39586722 - 39586559
Alignment:
Q  265 cggaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataa 364  Q
    ||||||||||||||||||||||| |||||||||| ||||||||||||||||||| ||||||||||||||||||||| |||||| |||||||| |||||||    
T  39586722 cggaaagattcagagccattaatgtgggtttggatggttacaaccactaacacggtttcattgactgtattaatgacctaggatttgttttaagctataa 39586623  T
Q  365 ataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattattc 428  Q
    ||| |||||||| ||||| | |||| |||||||||||  |||||| ||||||||||| ||||||    
T  39586622 ataggcttccattttcaacaaatactttcattcttcaattcacctattttcttacattttattc 39586559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 265 - 417
Target Start/End: Original strand, 26502177 - 26502332
Alignment:
Q  265 cggaaagattcagagccattaatatgggtttggacggttacaa---ccactaacacgttttcattgactgtattaatgatctaggacttgttttaggcta 361  Q
    ||||||||||||||||||||||| ||||||||||| |||||||   ||||||||||||||||||||||||||||||||| |||||||||||||||| |||    
T  26502177 cggaaagattcagagccattaatgtgggtttggacagttacaacaaccactaacacgttttcattgactgtattaatgacctaggacttgttttagacta 26502276  T
Q  362 taaataagcttccatcttcaagatataccttcattcttcacatcaccttttttctt 417  Q
    |||||| |||||||||||||| | |||||| |||||||||| |||||| |||||||    
T  26502277 taaataggcttccatcttcaacaaatacctacattcttcacttcacctcttttctt 26502332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 276 - 417
Target Start/End: Original strand, 41193717 - 41193858
Alignment:
Q  276 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 375  Q
    ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |||||||    
T  41193717 agagctattaatgtgggtttggacggttacaaccactaacacgttttcattgactgtagtaatgacctaggacttgttttaggctataaatatgcttcca 41193816  T
Q  376 tcttcaagatataccttcattcttcacatcaccttttttctt 417  Q
    ||||||| | ||||||||||||| ||| |||||| |||||||    
T  41193817 tcttcaacaaataccttcattctccacttcacctcttttctt 41193858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 276 - 417
Target Start/End: Complemental strand, 39353435 - 39353294
Alignment:
Q  276 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 375  Q
    |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |||||||    
T  39353435 agagtcattaatgtgggtttggacggttacaaccactaacacgttttcattgactgtattaatgacctaggatttgttttaggctataaataggcttcca 39353336  T
Q  376 tcttcaagatataccttcattcttcacatcaccttttttctt 417  Q
    ||||||| | |||| |||||||||||| || ||| |||||||    
T  39353335 tcttcaacagatacattcattcttcacttcgcctcttttctt 39353294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 276 - 417
Target Start/End: Original strand, 49166110 - 49166250
Alignment:
Q  276 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 375  Q
    |||| ||||||| | |||| ||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||    
T  49166110 agagtcattaatgtaggttaggacggttacaaccactaacatgttttcattgactgtagtaatgatctaggacttgttttaggctataaataggcttcca 49166209  T
Q  376 tcttcaagatataccttcattcttcacatcaccttttttctt 417  Q
    ||||| | | ||||||||||||||||| |||| | |||||||    
T  49166210 tcttc-acaaataccttcattcttcacttcacatcttttctt 49166250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 281 - 417
Target Start/End: Original strand, 31765207 - 31765343
Alignment:
Q  281 cattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttccatcttc 380  Q
    ||||||| | |||||| ||||||||||||||||||||||||| |||||||| | |||||| ||||||||||||||||| |||||||| ||||||||||||    
T  31765207 cattaatgtaggtttgaacggttacaaccactaacacgtttttattgactgcactaatgacctaggacttgttttaggttataaataggcttccatcttc 31765306  T
Q  381 aagatataccttcattcttcacatcaccttttttctt 417  Q
    || | ||||||||||||||||| ||||||| ||||||    
T  31765307 aacaaataccttcattcttcacttcaccttctttctt 31765343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 310 - 421
Target Start/End: Complemental strand, 41174913 - 41174802
Alignment:
Q  310 actaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcacct 409  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||| |||| |    
T  41174913 actaacacgttttcattgactgtattaatgacataggacttgttttaggctataaataggcttccatcttcaacaaataccttcattcttcacttcacat 41174814  T
Q  410 tttttcttacat 421  Q
     |||||||||||    
T  41174813 cttttcttacat 41174802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 293 - 421
Target Start/End: Complemental strand, 33843637 - 33843509
Alignment:
Q  293 tttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatatacctt 392  Q
    ||||||| ||||  ||||| ||||||||||  ||||||||  | ||||||||||||||||||||||||||||||| | |||||||||||| | || ||||    
T  33843637 tttggacagttagcaccacaaacacgttttatttgactgtggttatgatctaggacttgttttaggctataaataggtttccatcttcaacaaattcctt 33843538  T
Q  393 cattcttcacatcaccttttttcttacat 421  Q
    |||||||||| |||||| |||| ||||||    
T  33843537 cattcttcacttcacctctttttttacat 33843509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 337 - 421
Target Start/End: Complemental strand, 42899294 - 42899210
Alignment:
Q  337 atgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacat 421  Q
    ||||| || |||||||||||||||||||||| |||| ||| ||||| | || |||||||||||||| ||||||||||||||||||    
T  42899294 atgatatatgacttgttttaggctataaataggcttgcattttcaacaaattccttcattcttcacttcaccttttttcttacat 42899210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 337 - 421
Target Start/End: Original strand, 51328989 - 51329073
Alignment:
Q  337 atgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacat 421  Q
    |||| |||||||||||||||||||||||||| |||| ||| ||||| | || |||||||||||||| |||||| |||| ||||||    
T  51328989 atgaactaggacttgttttaggctataaataggcttgcatgttcaacaaattccttcattcttcacttcacctcttttattacat 51329073  T

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Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 337 - 419
Target Start/End: Original strand, 25214595 - 25214677
Alignment:
Q  337 atgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttac 419  Q
    |||||||||||||||||||||||||||||||  ||| |||||| || | || |||||||||||||  |||||  |||||||||    
T  25214595 atgatctaggacttgttttaggctataaatagacttacatctttaacaaattccttcattcttcaattcaccacttttcttac 25214677  T

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Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 265 - 308
Target Start/End: Complemental strand, 41182049 - 41182006
Alignment:
Q  265 cggaaagattcagagccattaatatgggtttggacggttacaac 308  Q
    ||||||||||||||||||||||| |||||||||| |||||||||    
T  41182049 cggaaagattcagagccattaatgtgggtttggatggttacaac 41182006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 340 - 400
Target Start/End: Original strand, 44207641 - 44207701
Alignment:
Q  340 atctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttc 400  Q
    ||||| |||||||||||||||||||| ||||||  |||||||| || | ||||||||||||    
T  44207641 atctatgacttgttttaggctataaaaaagcttggatcttcaacattttccttcattcttc 44207701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 346 - 402
Target Start/End: Complemental strand, 53394013 - 53393957
Alignment:
Q  346 gacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcac 402  Q
    |||||||||||||||||||||| |||| ||| ||||| | || ||||||||||||||    
T  53394013 gacttgttttaggctataaataggcttgcatgttcaacaaattccttcattcttcac 53393957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 313 - 400
Target Start/End: Original strand, 21979926 - 21980013
Alignment:
Q  313 aacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttc 400  Q
    ||||||||||  ||||||||| | | || ||| ||||| ||| |||||||||| ||||||  ||||||||||| | ||||||||||||    
T  21979926 aacacgttttatttgactgtaattaagacctatgacttatttaaggctataaaaaagcttggatcttcaagattttccttcattcttc 21980013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 313 - 400
Target Start/End: Original strand, 22002357 - 22002444
Alignment:
Q  313 aacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttc 400  Q
    ||||||||||  ||||||||| | | || ||| ||||| ||| |||||||||| ||||||  ||||||||||| | ||||||||||||    
T  22002357 aacacgttttatttgactgtaattaagacctatgacttatttaaggctataaaaaagcttggatcttcaagattttccttcattcttc 22002444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 359 - 421
Target Start/End: Original strand, 10494800 - 10494862
Alignment:
Q  359 ctataaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacat 421  Q
    ||||||||| ||||  |||||||| |  | |||||||||||||| ||||||||||||||||||    
T  10494800 ctataaatatgcttagatcttcaacaatttccttcattcttcacttcaccttttttcttacat 10494862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 117; Significance: 2e-59; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 265 - 421
Target Start/End: Complemental strand, 40728175 - 40728019
Alignment:
Q  265 cggaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataa 364  Q
    |||||||||||| |||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  40728175 cggaaagattcatagccattaatgtgggtatggatggttacaaccactaacacgttttcattgactgtattaatgacctaggacttgttttaggctataa 40728076  T
Q  365 ataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacat 421  Q
    ||| |||| ||||||||| | |||||||||||||||||||||||| |||||||||||    
T  40728075 ataggctttcatcttcaacaaataccttcattcttcacatcacctcttttcttacat 40728019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 265 - 421
Target Start/End: Complemental strand, 45229219 - 45229063
Alignment:
Q  265 cggaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataa 364  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||    
T  45229219 cggaaagattcagagccattaatgtgggtttggacggttacaaccactaacacgttttcatggactgtattaatgacctaggacttgttttaggctataa 45229120  T
Q  365 ataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacat 421  Q
    ||| | |||||||||||| | |||  ||||||||||||||||||| |||||||||||    
T  45229119 ataggattccatcttcaacaaatatattcattcttcacatcacctcttttcttacat 45229063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 266 - 421
Target Start/End: Original strand, 28780765 - 28780920
Alignment:
Q  266 ggaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaa 365  Q
    |||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||  || ||||||||||||||||||||    
T  28780765 ggaaagattcagagccattaatgtggttttgggcggttacaaccactaacacgttttcattgactgtattaatgacatatgacttgttttaggctataaa 28780864  T
Q  366 taagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacat 421  Q
    || |||||||||||||| | |||||||||||||||||||||||| |||||||||||    
T  28780865 taggcttccatcttcaacaaataccttcattcttcacatcacctcttttcttacat 28780920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 265 - 417
Target Start/End: Complemental strand, 35158868 - 35158716
Alignment:
Q  265 cggaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataa 364  Q
    ||||||||||||||||||||| | |||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||    
T  35158868 cggaaagattcagagccattattgtgggtttggacggttagaaccactaacacgttttcatttactgtattaatgacctaggacttgttttaggctataa 35158769  T
Q  365 ataagcttccatcttcaagatataccttcattcttcacatcaccttttttctt 417  Q
    ||| |||||||||||||| | ||||||||||||||||| |||||| |||||||    
T  35158768 ataggcttccatcttcaacaaataccttcattcttcacttcacctcttttctt 35158716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 267 - 417
Target Start/End: Complemental strand, 33281233 - 33281083
Alignment:
Q  267 gaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaat 366  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||    
T  33281233 gaaagattcagagccattaatgtgggtttggacggttacaaccactaacacgttttcattgattgtattaatgacctaagacttgttttaggctataaat 33281134  T
Q  367 aagcttccatcttcaagatataccttcattcttcacatcaccttttttctt 417  Q
    | |||| ||||||||| | ||||||||||||||||| |||||| |||||||    
T  33281133 aggcttacatcttcaacaaataccttcattcttcacttcacctcttttctt 33281083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 265 - 421
Target Start/End: Original strand, 52416919 - 52417078
Alignment:
Q  265 cggaaagattcagagccattaatatgggtttggacggttacaa---ccactaacacgttttcattgactgtattaatgatctaggacttgttttaggcta 361  Q
    ||||||||||||||||||||||| |||||||||||||||||||   ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||    
T  52416919 cggaaagattcagagccattaatgtgggtttggacggttacaacaaccactaacacgttttcattgactgtattaatgacctaagacttgttttaggcta 52417018  T
Q  362 taaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacat 421  Q
    |||||| |||||||||||||| | ||||| ||||||||||| |||||| |||||||||||    
T  52417019 taaataggcttccatcttcaacaaataccctcattcttcacttcacctcttttcttacat 52417078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 265 - 421
Target Start/End: Complemental strand, 16024022 - 16023866
Alignment:
Q  265 cggaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataa 364  Q
    ||||||||||||||| ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||    
T  16024022 cggaaagattcagagtcattaatgtgggtttggacggttgcaaccactaacacgttttcattgactgtattaataacctatgacttgttttaggctataa 16023923  T
Q  365 ataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacat 421  Q
    ||| |||||||| ||||| | ||||||||||||||||| |||||| |||||||||||    
T  16023922 ataggcttccatattcaacaaataccttcattcttcacttcacctcttttcttacat 16023866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 265 - 417
Target Start/End: Complemental strand, 31093255 - 31093103
Alignment:
Q  265 cggaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataa 364  Q
    ||||||||||||||||||||| | |||||||||||||||||||||||||||||| | ||||||||||||||||||| ||| |||||||||||||||||||    
T  31093255 cggaaagattcagagccattattgtgggtttggacggttacaaccactaacacgatctcattgactgtattaatgacctatgacttgttttaggctataa 31093156  T
Q  365 ataagcttccatcttcaagatataccttcattcttcacatcaccttttttctt 417  Q
    ||| |||||||||||||| | ||||||||||||||||| |||||| |||||||    
T  31093155 ataggcttccatcttcaacaaataccttcattcttcacttcacctcttttctt 31093103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 265 - 417
Target Start/End: Complemental strand, 1602932 - 1602781
Alignment:
Q  265 cggaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataa 364  Q
    ||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||    
T  1602932 cggaaagattcagagtcattaatgtggatttggacggttacaaccactaacacgtttt-attgactgtattaatgacctaggacttgttttaggctataa 1602834  T
Q  365 ataagcttccatcttcaagatataccttcattcttcacatcaccttttttctt 417  Q
    ||| |||| ||||||||| | ||||||||||||||||| |||||| |||||||    
T  1602833 ataggctttcatcttcaacaaataccttcattcttcacttcacctcttttctt 1602781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 265 - 417
Target Start/End: Complemental strand, 45462400 - 45462248
Alignment:
Q  265 cggaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataa 364  Q
    ||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  45462400 cggaaagattcagagccattattgtgggtttggacggttacaaccactgacacgttttcattgactgtattaatgatctatgacttgttttaggctataa 45462301  T
Q  365 ataagcttccatcttcaagatataccttcattcttcacatcaccttttttctt 417  Q
    |||  ||| ||||||||| | ||| ||||||||||||| |||||| |||||||    
T  45462300 atagactttcatcttcaacaaatatcttcattcttcacttcacctattttctt 45462248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 276 - 417
Target Start/End: Original strand, 2013733 - 2013874
Alignment:
Q  276 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 375  Q
    |||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||  |||||||    
T  2013733 agagtcattaatgtggatttggacggttacaaccactaacacgttttcattgactgtattaatgacctaggacttgttttaggctataaattggcttcca 2013832  T
Q  376 tcttcaagatataccttcattcttcacatcaccttttttctt 417  Q
    ||||||| | ||||||||||||||||| |||||| |||||||    
T  2013833 tcttcaacaaataccttcattcttcacttcacctcttttctt 2013874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 276 - 417
Target Start/End: Original strand, 4189874 - 4190015
Alignment:
Q  276 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 375  Q
    |||| ||||||| |||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||| |||||||    
T  4189874 agagtcattaatgtgggtttggacggttacaaccactaacacgtttttattgactatattaatgacctaggacttgttttaggctataaataggcttcca 4189973  T
Q  376 tcttcaagatataccttcattcttcacatcaccttttttctt 417  Q
    ||||||| | ||||||||||||||||| |||||| |||||||    
T  4189974 tcttcaacaaataccttcattcttcacttcacctcttttctt 4190015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 276 - 417
Target Start/End: Original strand, 38551270 - 38551411
Alignment:
Q  276 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 375  Q
    |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |||||||    
T  38551270 agagccattaatgtaggtttggacggttacaaccactaacacgttttcattgactgtactaatgacctaggacttgttttaggctataaataggcttcca 38551369  T
Q  376 tcttcaagatataccttcattcttcacatcaccttttttctt 417  Q
    ||||||| | ||||||||||||||||| |||| | |||||||    
T  38551370 tcttcaacaaataccttcattcttcacttcacatcttttctt 38551411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 265 - 417
Target Start/End: Complemental strand, 49374466 - 49374315
Alignment:
Q  265 cggaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataa 364  Q
    ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |||||| ||| |||||||||||||||||||    
T  49374466 cggaaagattcagagccattaatgtgggtttggacagttacaaccactaacacgttttcattgactgta-taatgacctatgacttgttttaggctataa 49374368  T
Q  365 ataagcttccatcttcaagatataccttcattcttcacatcaccttttttctt 417  Q
    ||| |||||||||||||| | | |||| |||||||||| |||||| |||||||    
T  49374367 ataggcttccatcttcaacaaaaacctccattcttcacttcacctcttttctt 49374315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 265 - 417
Target Start/End: Complemental strand, 51538794 - 51538642
Alignment:
Q  265 cggaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataa 364  Q
    ||||||||||||| ||||||||| ||||||||||| ||| ||||||| |||| |||||||||||||||||||||||  ||||||||||||||||||||||    
T  51538794 cggaaagattcagggccattaatgtgggtttggacagttgcaaccaccaacatgttttcattgactgtattaatgacttaggacttgttttaggctataa 51538695  T
Q  365 ataagcttccatcttcaagatataccttcattcttcacatcaccttttttctt 417  Q
    ||| |||||||||||||| | ||||||||||||||||| |||||| |||||||    
T  51538694 atatgcttccatcttcaacaaataccttcattcttcacttcacctcttttctt 51538642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 265 - 417
Target Start/End: Complemental strand, 30003762 - 30003608
Alignment:
Q  265 cggaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgtt--ttaggctat 362  Q
    ||||||||||||||| ||||| | ||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||  |||||||||    
T  30003762 cggaaagattcagagtcattattgtgggtttggacggttacaagcaataacacgttttcattgactgtattaatgacctaggacttgtttattaggctat 30003663  T
Q  363 aaataagcttccatcttcaagatataccttcattcttcacatcaccttttttctt 417  Q
    ||||| |||||||||||||| | ||||||||||||||||| |||||| |||||||    
T  30003662 aaataggcttccatcttcaacaaataccttcattcttcacttcacctcttttctt 30003608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 276 - 417
Target Start/End: Complemental strand, 4048271 - 4048130
Alignment:
Q  276 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 375  Q
    |||| ||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||| |||||||    
T  4048271 agagtcattaatgtaggtttggacggttacaaccactaacacgttttcattgattgtattaataacctaggacttgttttaggctataaataggcttcca 4048172  T
Q  376 tcttcaagatataccttcattcttcacatcaccttttttctt 417  Q
    ||||||| | ||||||||||||||||| |||||| |||||||    
T  4048171 tcttcaacaaataccttcattcttcacttcacctcttttctt 4048130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 276 - 417
Target Start/End: Original strand, 168540 - 168681
Alignment:
Q  276 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 375  Q
    ||||||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |||||||||  ||||||    
T  168540 agagccactaatgtgggtttggacgtttacaaccactaacacgttttcattgactgtattaatgacctatgacttgttttagactataaatagccttcca 168639  T
Q  376 tcttcaagatataccttcattcttcacatcaccttttttctt 417  Q
    ||||||| | ||||||||||||||||| |||||| |||||||    
T  168640 tcttcaacaaataccttcattcttcacttcacctcttttctt 168681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 276 - 417
Target Start/End: Complemental strand, 6963592 - 6963451
Alignment:
Q  276 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 375  Q
    |||||||||||| ||||||||||||||||||| ||||||||| |||||||||||| || |||||| ||||||||| |||||||||||||||| |||||||    
T  6963592 agagccattaatgtgggtttggacggttacaatcactaacacattttcattgactatagtaatgacctaggacttattttaggctataaataggcttcca 6963493  T
Q  376 tcttcaagatataccttcattcttcacatcaccttttttctt 417  Q
    ||||||| | ||||||||||||||||| |||||| |||||||    
T  6963492 tcttcaacaaataccttcattcttcacttcacctcttttctt 6963451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 292 - 417
Target Start/End: Complemental strand, 16452052 - 16451927
Alignment:
Q  292 gtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatatacct 391  Q
    ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||  | ||||||    
T  16452052 gtttgaacggttacaaccactaacacgttttcattgactgtagtaatgatctaggacttgttttaggctataaataggcttccatcttcagcagatacct 16451953  T
Q  392 tcattcttcacatcaccttttttctt 417  Q
    ||||||||||| |||||| |||||||    
T  16451952 tcattcttcacttcacctcttttctt 16451927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 268 - 421
Target Start/End: Complemental strand, 55136814 - 55136658
Alignment:
Q  268 aaagattcagagccattaatatgggtttggacggttacaac---cactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataa 364  Q
    ||||||||| | |||||||| ||||||||||||||||||||   |||||||||||| ||||||| ||||||||||| ||| |||||||||||||||||||    
T  55136814 aaagattcaaatccattaatgtgggtttggacggttacaacaaccactaacacgttatcattgattgtattaatgacctatgacttgttttaggctataa 55136715  T
Q  365 ataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacat 421  Q
    ||| |||| ||||||||| | ||||||||||||||||| |||||| |||||||||||    
T  55136714 ataggctttcatcttcaacaaataccttcattcttcacttcacctcttttcttacat 55136658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 268 - 428
Target Start/End: Original strand, 9036089 - 9036251
Alignment:
Q  268 aaagattcagagccattaatatgggtttggacggttacaac---cactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataa 364  Q
    |||||||||||| ||||||| ||||||||||||||||||||   ||||||||||||||||||||||||||||||||  |||||||| |||||||||||||    
T  9036089 aaagattcagagtcattaatgtgggtttggacggttacaacaaccactaacacgttttcattgactgtattaatgacttaggactt-ttttaggctataa 9036187  T
Q  365 ataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattattc 428  Q
    ||| |||| ||||||||| | |||| |||||||||||  |||||| ||||||||||| ||||||    
T  9036188 ataggctttcatcttcaacaaatacattcattcttcatttcacctcttttcttacattttattc 9036251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 276 - 417
Target Start/End: Original strand, 15542841 - 15542981
Alignment:
Q  276 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 375  Q
    ||||| |||||| |||||||||||||||| ||| ||||||||||||||||||||| || |||||| |||||||||||||||||||||||||| |||||||    
T  15542841 agagcaattaatgtgggtttggacggttaaaac-actaacacgttttcattgactatagtaatgacctaggacttgttttaggctataaataggcttcca 15542939  T
Q  376 tcttcaagatataccttcattcttcacatcaccttttttctt 417  Q
    ||||||| | ||||||||||||||||| |||||| |||||||    
T  15542940 tcttcaacaaataccttcattcttcacttcacctcttttctt 15542981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 276 - 417
Target Start/End: Complemental strand, 45924736 - 45924595
Alignment:
Q  276 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 375  Q
    |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| | ||| |    
T  45924736 agagccattaatgtgggtttggacggttgcaaccactaacacgttttcattgactgtattaatgacctatgacttgttttaggctataaataggtttcaa 45924637  T
Q  376 tcttcaagatataccttcattcttcacatcaccttttttctt 417  Q
    ||||||| | |||||||||||| |||| | |||| |||||||    
T  45924636 tcttcaacaaataccttcattcctcacttaacctcttttctt 45924595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 265 - 421
Target Start/End: Original strand, 38218251 - 38218410
Alignment:
Q  265 cggaaagattcagagccattaatatgggtttggacggttacaa---ccactaacacgttttcattgactgtattaatgatctaggacttgttttaggcta 361  Q
    ||||||| || ||||||| |||| |||||||||||| ||||||   ||||||||||||||||||||||||||||||||| |||| ||||||||||| |||    
T  38218251 cggaaaggtttagagccactaatgtgggtttggacgattacaacaaccactaacacgttttcattgactgtattaatgacctagaacttgttttagccta 38218350  T
Q  362 taaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacat 421  Q
    |||||| |||||||||||||| | |||||| |||||||||| |||||| |||| ||||||    
T  38218351 taaataggcttccatcttcaacaaatacctacattcttcacttcacctctttttttacat 38218410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 265 - 421
Target Start/End: Original strand, 43841863 - 43842022
Alignment:
Q  265 cggaaagattcagagccattaatatgggtttggacggttacaa---ccactaacacgttttcattgactgtattaatgatctaggacttgttttaggcta 361  Q
    |||||||||||| |||||||||| |||||||||||||||||||   ||||||| ||||||| ||||||||||||||||| ||| ||||||||||||||||    
T  43841863 cggaaagattcatagccattaatgtgggtttggacggttacaacaaccactaagacgttttaattgactgtattaatgacctatgacttgttttaggcta 43841962  T
Q  362 taaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacat 421  Q
    ||||||  ||| ||||||||| | |||| |||||||||||  |||||| |||||||||||    
T  43841963 taaatagactttcatcttcaacaaatacattcattcttcaattcacctattttcttacat 43842022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 265 - 394
Target Start/End: Original strand, 56463635 - 56463767
Alignment:
Q  265 cggaaagattcagagccattaatatgggtttggacggttacaa---ccactaacacgttttcattgactgtattaatgatctaggacttgttttaggcta 361  Q
    |||||||| || ||||||||||| |||||||||||||||||||   |||||||||| |||||||||||||||||||||| |  |||||||||||||||||    
T  56463635 cggaaagactcggagccattaatgtgggtttggacggttacaacaaccactaacacattttcattgactgtattaatgaccgtggacttgttttaggcta 56463734  T
Q  362 taaataagcttccatcttcaagatataccttca 394  Q
    |||||| |||||||||||||| | |||||||||    
T  56463735 taaataggcttccatcttcaacaaataccttca 56463767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 276 - 414
Target Start/End: Original strand, 28310890 - 28311029
Alignment:
Q  276 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggac-ttgttttaggctataaataagcttcc 374  Q
    |||| ||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||| ||| ||| ||||||||  ||||||||| ||||||    
T  28310890 agagtcattaatgtgggtttgaacggttacaaccactaacacgttttcattgaccgtattaatgacctaagactttgttttatactataaataggcttcc 28310989  T
Q  375 atcttcaagatataccttcattcttcacatcacctttttt 414  Q
    |||||||| | ||||||||||||||||  |||||| ||||    
T  28310990 atcttcaacaaataccttcattcttcatttcacctctttt 28311029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 276 - 417
Target Start/End: Original strand, 35319896 - 35320037
Alignment:
Q  276 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 375  Q
    |||| ||||||| || ||||||||||||||||| ||||||||||||||||| ||| || |||||| ||| ||||||||||| |||||||||| |||||||    
T  35319896 agagtcattaatgtgagtttggacggttacaactactaacacgttttcattaactatagtaatgacctatgacttgttttaagctataaataggcttcca 35319995  T
Q  376 tcttcaagatataccttcattcttcacatcaccttttttctt 417  Q
    ||||||| | |||| |||||||| ||| |||||| |||||||    
T  35319996 tcttcaacaaatactttcattctccacttcacctcttttctt 35320037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 337 - 421
Target Start/End: Original strand, 39807338 - 39807422
Alignment:
Q  337 atgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacat 421  Q
    ||||||||||| |||||||| |||||||||| |||| ||||||||| | || |||||||||||||| |||||| |||||||||||    
T  39807338 atgatctaggatttgttttacgctataaataggctttcatcttcaacaaattccttcattcttcacttcacctcttttcttacat 39807422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 313 - 419
Target Start/End: Original strand, 34953601 - 34953707
Alignment:
Q  313 aacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcacctttt 412  Q
    ||||||||||  ||||||||| | |||||||||||||| |||||||||||||||| | || ||||||||| | |   ||| ||||||||| |||||||||    
T  34953601 aacacgttttatttgactgtagttatgatctaggacttattttaggctataaataggtttgcatcttcaacaaacttctttattcttcacttcacctttt 34953700  T
Q  413 ttcttac 419  Q
    |||||||    
T  34953701 ttcttac 34953707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 337 - 419
Target Start/End: Complemental strand, 40602818 - 40602736
Alignment:
Q  337 atgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttac 419  Q
    |||||||||||||||||| | |||||||||| |||| ||||||||| | |  |||||||||||||| |||||| |||||||||    
T  40602818 atgatctaggacttgtttaatgctataaataggcttacatcttcaacaaactccttcattcttcacttcacctcttttcttac 40602736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 313 - 401
Target Start/End: Complemental strand, 20516770 - 20516682
Alignment:
Q  313 aacacgttttcattgactgta-ttaatgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttca 401  Q
    ||||||||||  ||||||||| ||||| |||||||| ||||||||||||||||||| |||| ||||||||| | || |||||||||||||    
T  20516770 aacacgttttatttgactgtagttaat-atctaggatttgttttaggctataaataggcttgcatcttcaacaaattccttcattcttca 20516682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 337 - 419
Target Start/End: Complemental strand, 56084189 - 56084107
Alignment:
Q  337 atgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttac 419  Q
    |||||||||||||||||| |||||||||||| |||| ||| ||||| | || | |||||||||||| || | | |||||||||    
T  56084189 atgatctaggacttgtttaaggctataaatatgcttgcatattcaacaaattcattcattcttcacttctcatcttttcttac 56084107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 117; Significance: 2e-59; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 265 - 421
Target Start/End: Original strand, 42882579 - 42882735
Alignment:
Q  265 cggaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataa 364  Q
    ||||||||||||||||||||| | |||||||||| |||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||    
T  42882579 cggaaagattcagagccattattgtgggtttggatggttacaaccactaacacattttcattgactgtattaatgacctaggacttgttttaggctataa 42882678  T
Q  365 ataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacat 421  Q
    ||| |||||||||||||| | ||| |||||||||||||||||||| |||||||||||    
T  42882679 ataggcttccatcttcaacaaatatcttcattcttcacatcacctcttttcttacat 42882735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 265 - 418
Target Start/End: Complemental strand, 37952449 - 37952296
Alignment:
Q  265 cggaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataa 364  Q
    ||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  37952449 cggaaagattcagagtcattaatgtgggtttggaccgttacaaccactaacacgttttcattgactgtattaatgacctaggacttgttttaggctataa 37952350  T
Q  365 ataagcttccatcttcaagatataccttcattcttcacatcaccttttttctta 418  Q
    | | |||||||||||||| | ||||||||||||||||| |||||| ||||||||    
T  37952349 aaaggcttccatcttcaacaaataccttcattcttcacttcacctcttttctta 37952296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 276 - 417
Target Start/End: Complemental strand, 41091305 - 41091164
Alignment:
Q  276 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 375  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||    
T  41091305 agagccattaatgtgggtttggacggttacaaccactaacacgttttcattgactgtattaatgacctaggacttgttttaggctataaataggcttcca 41091206  T
Q  376 tcttcaagatataccttcattcttcacatcaccttttttctt 417  Q
    ||||||| | ||||||||||||||||| |||| | |||||||    
T  41091205 tcttcaacaaataccttcattcttcacttcacttcttttctt 41091164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 276 - 417
Target Start/End: Original strand, 50261992 - 50262133
Alignment:
Q  276 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 375  Q
    |||| ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||    
T  50261992 agagtcattaatgtgggtttgaacggttacaaccactaacacgttttcattgactgtattaatgacctaggacttgttttaggctataaataggcttcca 50262091  T
Q  376 tcttcaagatataccttcattcttcacatcaccttttttctt 417  Q
    ||||||| | ||||||||||||||||| |||||| |||||||    
T  50262092 tcttcaacaaataccttcattcttcacttcacctcttttctt 50262133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 265 - 417
Target Start/End: Complemental strand, 44496634 - 44496482
Alignment:
Q  265 cggaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataa 364  Q
    |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  44496634 cggaaagattcaaagccattaatgtgggtttggacggttacaaccactaacacgttttcattgactgtattaatgacataggacttgttttaggctataa 44496535  T
Q  365 ataagcttccatcttcaagatataccttcattcttcacatcaccttttttctt 417  Q
    ||| |||| ||||||||| | |||| ||||||||||||  ||||| |||||||    
T  44496534 ataggctttcatcttcaacaaatactttcattcttcactccacctattttctt 44496482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 264 - 421
Target Start/End: Complemental strand, 29961547 - 29961390
Alignment:
Q  264 tcggaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctata 363  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |||||||||||  || ||||| ||||||||||||    
T  29961547 tcggaaagattcagagccattaatgtgggtttgaacggttacaaccactaacacgttttcattgattgtattaatgacttaagacttattttaggctata 29961448  T
Q  364 aataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacat 421  Q
    ||||  ||||||||||||| | ||||||||||||||||| |||| | |||||||||||    
T  29961447 aatagacttccatcttcaacaaataccttcattcttcacttcacatcttttcttacat 29961390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 276 - 417
Target Start/End: Complemental strand, 38860814 - 38860673
Alignment:
Q  276 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 375  Q
    |||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |||| ||    
T  38860814 agagccattaatgtgggtttggacggttactaccactaacacgttttcattgaatgtattaatgatctatgacttgttttaggctataaataggctttca 38860715  T
Q  376 tcttcaagatataccttcattcttcacatcaccttttttctt 417  Q
    ||||||| | ||||||||||||||||| |||||| |||||||    
T  38860714 tcttcaacaaataccttcattcttcacttcacctcttttctt 38860673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 276 - 417
Target Start/End: Complemental strand, 41086537 - 41086396
Alignment:
Q  276 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 375  Q
    |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |||||||    
T  41086537 agagccattaatgtgggtttggaaggttacaaccactaacacgttttcattgactgtattaatgacctaggacttgttttagactataaataggcttcca 41086438  T
Q  376 tcttcaagatataccttcattcttcacatcaccttttttctt 417  Q
    ||||||| | ||||||||||||||||| |||| | |||||||    
T  41086437 tcttcaacaaataccttcattcttcacttcacttcttttctt 41086396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 276 - 417
Target Start/End: Original strand, 41900288 - 41900429
Alignment:
Q  276 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 375  Q
    |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||    
T  41900288 agagccattaatgtgggtttggacggttacaaccactaacacattttcattgactgtattaatgacctatgacttgttttaggctataaataggcttcca 41900387  T
Q  376 tcttcaagatataccttcattcttcacatcaccttttttctt 417  Q
    ||||||| | ||||||||||||||||| | |||| |||||||    
T  41900388 tcttcaataaataccttcattcttcaccttacctcttttctt 41900429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 266 - 421
Target Start/End: Original strand, 12700526 - 12700684
Alignment:
Q  266 ggaaagattcagagccattaatatgggtttggacggttacaacca---ctaacacgttttcattgactgtattaatgatctaggacttgttttaggctat 362  Q
    |||||||||||||||||||||| || |||||||| ||||||||||   ||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  12700526 ggaaagattcagagccattaatgtgcgtttggacagttacaaccaccactaacacattttcattgactgtattaatgatctaggacttgttttaggctat 12700625  T
Q  363 aaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacat 421  Q
    ||||| |||||||||||||| | ||| ||||||||||||| | |||| |||||||||||    
T  12700626 aaataggcttccatcttcaacaaatatcttcattcttcacttgacctcttttcttacat 12700684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 265 - 421
Target Start/End: Original strand, 14587326 - 14587488
Alignment:
Q  265 cggaaagattcagagccattaatatgggtttggacggttacaa---ccactaacacgttttcattgactgtattaatgatctaggacttgttttaggcta 361  Q
    |||||||||||||||||||| || |||||||||||||||||||   |||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  14587326 cggaaagattcagagccatttatgtgggtttggacggttacaacaaccactaacacgttttcattgactgtattaatgacttaggacttgttttaggcta 14587425  T
Q  362 taaata---agcttccatcttcaagatataccttcattcttcacatcaccttttttcttacat 421  Q
    ||||||    |||||||||||||| | ||||||||||||||||| |||||| |||||||||||    
T  14587426 taaataggcggcttccatcttcaacaaataccttcattcttcacttcacctcttttcttacat 14587488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 276 - 417
Target Start/End: Complemental strand, 12528583 - 12528442
Alignment:
Q  276 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 375  Q
    |||| ||||||||||  ||| ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||    
T  12528583 agagtcattaatatgaatttcgacggttacaaccaccaacacgttttcattgactgtattaatgacctaggacttgttttaggctataaataggcttcca 12528484  T
Q  376 tcttcaagatataccttcattcttcacatcaccttttttctt 417  Q
    ||||||| | ||||||||||||||||| |||||| |||||||    
T  12528483 tcttcaacaaataccttcattcttcacttcacctattttctt 12528442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 266 - 421
Target Start/End: Complemental strand, 33801514 - 33801356
Alignment:
Q  266 ggaaagattcagagccattaatatgggtttggacggttaca---accactaacacgttttcattgactgtattaatgatctaggacttgttttaggctat 362  Q
    |||||||||||||| ||||||| |||||||||||| |||||   ||||||||||||||||||||||||||| ||||||  ||||||||||||||||||||    
T  33801514 ggaaagattcagagtcattaatgtgggtttggacgattacagcaaccactaacacgttttcattgactgtaataatgacttaggacttgttttaggctat 33801415  T
Q  363 aaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacat 421  Q
    ||||| |||||||||||||| | |||||| |||||||||| |||||| |||||||||||    
T  33801414 aaataggcttccatcttcaaaaaatacctacattcttcacttcacctcttttcttacat 33801356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 278 - 428
Target Start/End: Original strand, 52632362 - 52632512
Alignment:
Q  278 agccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttccatc 377  Q
    |||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||    
T  52632362 agccattaatgtgggtttagacggttacaaccactaacacgttttcattgattgtattaatgacctaggacttgttttaggctataaataggcttccatc 52632461  T
Q  378 ttcaagatataccttcattcttcacatcaccttttttcttacatattattc 428  Q
    ||||| | ||  ||||||||||||| |||||| ||||| | ||| ||||||    
T  52632462 ttcaacaaatgtcttcattcttcacttcacctcttttcctccattttattc 52632512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 276 - 417
Target Start/End: Original strand, 11952421 - 11952562
Alignment:
Q  276 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 375  Q
    |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||   | ||||| |||||||||||||||| |||||||    
T  11952421 agagccattaatgtgagtttggacggttacaaccactaacacgttttcattgactgtattaatgacaaaagacttattttaggctataaataggcttcca 11952520  T
Q  376 tcttcaagatataccttcattcttcacatcaccttttttctt 417  Q
    ||||||| | ||||||||||||||||| |||||| |||||||    
T  11952521 tcttcaacaaataccttcattcttcacttcacctcttttctt 11952562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 276 - 417
Target Start/End: Complemental strand, 49851846 - 49851705
Alignment:
Q  276 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 375  Q
    |||||||| ||| | |||||||||||||||||||||||||| |||||||||||||||| |||||| |||||||||||||||||||||||||| |||| ||    
T  49851846 agagccatcaatgtaggtttggacggttacaaccactaacatgttttcattgactgtactaatgacctaggacttgttttaggctataaataggctttca 49851747  T
Q  376 tcttcaagatataccttcattcttcacatcaccttttttctt 417  Q
    ||||||| | ||||||||||||||||| |||||| |||||||    
T  49851746 tcttcaacaaataccttcattcttcacttcacctcttttctt 49851705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 265 - 421
Target Start/End: Original strand, 3517564 - 3517720
Alignment:
Q  265 cggaaagattcagagccattaatatgggtttggacggttacaac---cactaacacgttttcattgactgtattaatgatctaggacttgttttaggcta 361  Q
    ||||||||||||||||||||||| ||||||||||||||||||||   |||||||||||||||||||||||||   |||| |||||| |||||||||||||    
T  3517564 cggaaagattcagagccattaatgtgggtttggacggttacaacaaccactaacacgttttcattgactgta---atgacctaggagttgttttaggcta 3517660  T
Q  362 taaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacat 421  Q
    ||||||  |||  |||||||| | ||||||||||||||||| |||||| |||||||||||    
T  3517661 taaatagacttttatcttcaacaaataccttcattcttcacttcacctcttttcttacat 3517720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 292 - 417
Target Start/End: Complemental strand, 27216920 - 27216795
Alignment:
Q  292 gtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatatacct 391  Q
    ||||||||||||||||||||||||||||||||||||| |||| |||||| |||||||||||||||||||||||||| |||| ||||||||| | |||| |    
T  27216920 gtttggacggttacaaccactaacacgttttcattgattgtactaatgacctaggacttgttttaggctataaataggctttcatcttcaaaaaatactt 27216821  T
Q  392 tcattcttcacatcaccttttttctt 417  Q
    ||||||||||| |||||| |||||||    
T  27216820 tcattcttcacttcacctcttttctt 27216795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 276 - 417
Target Start/End: Original strand, 23984039 - 23984177
Alignment:
Q  276 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 375  Q
    |||| |||||||  ||||||||||||||||||||||||||| ||||||||||||||||   |||| |||||||||||||||||||||||||| | |||||    
T  23984039 agagtcattaatgagggtttggacggttacaaccactaacatgttttcattgactgta---atgacctaggacttgttttaggctataaataggtttcca 23984135  T
Q  376 tcttcaagatataccttcattcttcacatcaccttttttctt 417  Q
    ||||||| | ||||||||||||||||| |||||| |||||||    
T  23984136 tcttcaacaaataccttcattcttcacttcacctcttttctt 23984177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 268 - 417
Target Start/End: Complemental strand, 41723676 - 41723525
Alignment:
Q  268 aaagattcagagccattaatatgggtttggacggt---tacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataa 364  Q
    |||||||||||||||||||| |||||||||||| |    |||||||| |||||||||||||||||| ||||||||| ||| |||||||||||||||||||    
T  41723676 aaagattcagagccattaatgtgggtttggacgataacaacaaccaccaacacgttttcattgactatattaatgaccta-gacttgttttaggctataa 41723578  T
Q  365 ataagcttccatcttcaagatataccttcattcttcacatcaccttttttctt 417  Q
    ||| |||| ||||||||| | ||||||||||||||||| |||||| |||||||    
T  41723577 ataggctttcatcttcaacaaataccttcattcttcacttcacctcttttctt 41723525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 326 - 421
Target Start/End: Original strand, 44757581 - 44757676
Alignment:
Q  326 tgactgtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacat 421  Q
    ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||| |||||| |||||||||||    
T  44757581 tgactgtattaatgacctaggacttgttttaggctataaataggcttccatcttcaacaaataccttcattcttcacttcacctcttttcttacat 44757676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 268 - 334
Target Start/End: Original strand, 48964920 - 48964986
Alignment:
Q  268 aaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtat 334  Q
    |||||||||||| ||||||| |||||||||||||||| || ||||||||||||||||||||||||||    
T  48964920 aaagattcagagtcattaatgtgggtttggacggttagaatcactaacacgttttcattgactgtat 48964986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 337 - 419
Target Start/End: Complemental strand, 34549931 - 34549849
Alignment:
Q  337 atgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttac 419  Q
    ||||||||||||||||||||||||||||||| | || ||| ||||| | || |||||||||||||| |||||| |||||||||    
T  34549931 atgatctaggacttgttttaggctataaataggtttgcatattcaacaaattccttcattcttcacgtcacctgttttcttac 34549849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 370 - 421
Target Start/End: Complemental strand, 22858801 - 22858750
Alignment:
Q  370 cttccatcttcaagatataccttcattcttcacatcaccttttttcttacat 421  Q
    ||||||||||||| | |||||||||||||||||||||||| |||||||||||    
T  22858801 cttccatcttcaacaaataccttcattcttcacatcacctcttttcttacat 22858750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 265 - 312
Target Start/End: Complemental strand, 22858847 - 22858800
Alignment:
Q  265 cggaaagattcagagccattaatatgggtttggacggttacaaccact 312  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  22858847 cggaaagattcagagccattaatgtgggttttgacggttacaaccact 22858800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 360 - 421
Target Start/End: Original strand, 48964984 - 48965045
Alignment:
Q  360 tataaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacat 421  Q
    |||||||| |||||||||||||| | |||| ||||||||||| ||||||| |||||||||||    
T  48964984 tataaataggcttccatcttcaacaaatacgttcattcttcatatcacctcttttcttacat 48965045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 313 - 372
Target Start/End: Complemental strand, 29913928 - 29913869
Alignment:
Q  313 aacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagctt 372  Q
    ||||||||||||||| ||||| | || | |||||||||||||| || |||||||||||||    
T  29913928 aacacgttttcattgtctgtacttataacctaggacttgttttgggttataaataagctt 29913869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 402
Target Start/End: Original strand, 30518205 - 30518264
Alignment:
Q  343 taggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcac 402  Q
    ||||||||||||||||||||||||| |||| ||| ||||| | ||  |||||||||||||    
T  30518205 taggacttgttttaggctataaataggcttgcatgttcaaaaaatttcttcattcttcac 30518264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 346 - 400
Target Start/End: Original strand, 22334962 - 22335016
Alignment:
Q  346 gacttgttttaggctataaataagcttccatcttcaagatataccttcattcttc 400  Q
    |||||||||||||||||||| | ||||| |||||||| || | ||||||||||||    
T  22334962 gacttgttttaggctataaaaaggcttcgatcttcaacattttccttcattcttc 22335016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 113; Significance: 5e-57; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 265 - 417
Target Start/End: Original strand, 8239976 - 8240128
Alignment:
Q  265 cggaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataa 364  Q
    ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||||| |  ||||||||||||||||||||||    
T  8239976 cggaaagattcagagccattattgtgggtttggacggttacaaccactaacacgttttcattaactgtattaataacataggacttgttttaggctataa 8240075  T
Q  365 ataagcttccatcttcaagatataccttcattcttcacatcaccttttttctt 417  Q
    ||| |||||||||||||| | ||||||||||||||||| ||||||||||||||    
T  8240076 ataggcttccatcttcaacaaataccttcattcttcacttcaccttttttctt 8240128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 265 - 417
Target Start/End: Original strand, 39318584 - 39318736
Alignment:
Q  265 cggaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataa 364  Q
    ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  39318584 cggaaagattcagagccattattgtgggtttggacggttacaaccactaacacgttttcattgactgtattaatgacctatgacttgttttaggctataa 39318683  T
Q  365 ataagcttccatcttcaagatataccttcattcttcacatcaccttttttctt 417  Q
    ||| |||||||||||||| | ||||||||||| ||||| |||||| |||||||    
T  39318684 ataggcttccatcttcaacaaataccttcattattcacttcacctcttttctt 39318736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 265 - 417
Target Start/End: Original strand, 35684004 - 35684156
Alignment:
Q  265 cggaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataa 364  Q
    ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||||||| | || ||||||||||||||||||    
T  35684004 cggaaagattcagagccattattgtgggtttggacggttacaaccactaacacgttttcattgactgttttaatgacccagtacttgttttaggctataa 35684103  T
Q  365 ataagcttccatcttcaagatataccttcattcttcacatcaccttttttctt 417  Q
    ||| |||||||||||||| | ||||||||||||||||| |||||  |||||||    
T  35684104 ataggcttccatcttcaacaaataccttcattcttcacttcaccaattttctt 35684156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 265 - 417
Target Start/End: Original strand, 40105238 - 40105390
Alignment:
Q  265 cggaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataa 364  Q
    ||||||||||||||| ||||| | ||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  40105238 cggaaagattcagagtcattattgtgggtttggacggttgcaaccactaacacgttttcattgactgtattaatgacctaggacttgttttaggctataa 40105337  T
Q  365 ataagcttccatcttcaagatataccttcattcttcacatcaccttttttctt 417  Q
    ||| |||| ||||||||| | ||||||||||||||||  |||||| |||||||    
T  40105338 ataggctttcatcttcaacaaataccttcattcttcaattcacctcttttctt 40105390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 276 - 417
Target Start/End: Original strand, 43098545 - 43098686
Alignment:
Q  276 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 375  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |||||| |||||||||||||||||||||||||| |||||||    
T  43098545 agagccattaatgtgggtttggacggttacaaccactaacacgttttcattgactataataatgacctaggacttgttttaggctataaataggcttcca 43098644  T
Q  376 tcttcaagatataccttcattcttcacatcaccttttttctt 417  Q
    ||||||| | |||| |||||||||||| |||||| |||||||    
T  43098645 tcttcaacaaatacattcattcttcacttcacctcttttctt 43098686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 276 - 417
Target Start/End: Complemental strand, 6347433 - 6347292
Alignment:
Q  276 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 375  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |||||| |||||||||||||||||||||||| | |||||||    
T  6347433 agagccattaatgtgggtttggacggttacaaccactaacacgttttcatttactgtactaatgacctaggacttgttttaggctataaacatgcttcca 6347334  T
Q  376 tcttcaagatataccttcattcttcacatcaccttttttctt 417  Q
    ||||||| | ||||||||||||||||  |||||| |||||||    
T  6347333 tcttcaacaaataccttcattcttcatttcacctcttttctt 6347292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 264 - 417
Target Start/End: Complemental strand, 11076378 - 11076225
Alignment:
Q  264 tcggaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctata 363  Q
    |||||||||||||||| ||||| | |||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |||||    
T  11076378 tcggaaagattcagagtcattattgtgggtttggacggttacaaccactaacacgtttttattgactgtattaatgacctaggacttgttttagactata 11076279  T
Q  364 aataagcttccatcttcaagatataccttcattcttcacatcaccttttttctt 417  Q
    ||||  ||||||| ||||| | ||||||| ||||||||| |||||| |||||||    
T  11076278 aatagacttccattttcaacaaataccttaattcttcacttcacctcttttctt 11076225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 276 - 417
Target Start/End: Complemental strand, 37098471 - 37098330
Alignment:
Q  276 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 375  Q
    |||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||  | |||||||||||||||||||||||||||| ||    
T  37098471 agagccattaatgtgggtttagacggttacaaccactaacacgtttttattgactgtattaatgacatgggacttgttttaggctataaataagctttca 37098372  T
Q  376 tcttcaagatataccttcattcttcacatcaccttttttctt 417  Q
    ||||||| | ||||||||||||||||| |||||| |||||||    
T  37098371 tcttcaacaaataccttcattcttcacttcacctcttttctt 37098330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 265 - 421
Target Start/End: Original strand, 39260278 - 39260437
Alignment:
Q  265 cggaaagattcagagccattaatatgggtttggacggttacaaccac---taacacgttttcattgactgtattaatgatctaggacttgttttaggcta 361  Q
    ||||||||||||||| ||||||| |||||||||||||||||||| ||   ||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  39260278 cggaaagattcagagtcattaatgtgggtttggacggttacaacaaccattaacacgtttttattgactgtattaatgacctaggacttgttttaggcta 39260377  T
Q  362 taaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacat 421  Q
    |||||| ||||| |||||||| | |||| |||||||||||| |||||| |||||||||||    
T  39260378 taaataggcttctatcttcaacaaatacattcattcttcacttcacctcttttcttacat 39260437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 276 - 417
Target Start/End: Complemental strand, 32337948 - 32337807
Alignment:
Q  276 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 375  Q
    |||||||| ||| | ||||||||||||||||| |||||||||||||||||||| |||| |||||| |||||||||| ||||||||||||||| |||||||    
T  32337948 agagccatcaatgtaggtttggacggttacaatcactaacacgttttcattgattgtactaatgacctaggacttggtttaggctataaataggcttcca 32337849  T
Q  376 tcttcaagatataccttcattcttcacatcaccttttttctt 417  Q
    ||||||| | ||||||||||||||||| |||||| |||||||    
T  32337848 tcttcaacaaataccttcattcttcacttcacctcttttctt 32337807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 276 - 407
Target Start/End: Complemental strand, 20091998 - 20091867
Alignment:
Q  276 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 375  Q
    |||||||||||| | ||||||||| ||||||||||||||||||||||||||||| ||| ||||||  ||||||||||||||||||||| ||| |||||||    
T  20091998 agagccattaatgtcggtttggacagttacaaccactaacacgttttcattgaccgtagtaatgacataggacttgttttaggctatatataggcttcca 20091899  T
Q  376 tcttcaagatataccttcattcttcacatcac 407  Q
    ||||||| | ||||||||||||||||| ||||    
T  20091898 tcttcaacaaataccttcattcttcacttcac 20091867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 276 - 417
Target Start/End: Original strand, 31701047 - 31701185
Alignment:
Q  276 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 375  Q
    ||||| |||||| |||||||   |||||| ||||| |||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |||||||    
T  31701047 agagctattaatgtgggttt---cggttataaccaataacacgttttcattgactgtagtaatgacctaggacttgttttaggctataaataggcttcca 31701143  T
Q  376 tcttcaagatataccttcattcttcacatcaccttttttctt 417  Q
    ||||||| | ||||||||||||||||| |||||| |||||||    
T  31701144 tcttcaacaaataccttcattcttcacttcacctcttttctt 31701185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 276 - 417
Target Start/End: Original strand, 23144107 - 23144249
Alignment:
Q  276 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaa-tgatctaggacttgttttaggctataaataagcttcc 374  Q
    |||| ||||||| | |||||||||| ||||||||||||||| |||||||||||||||| ||| ||| ||||||||||||||||| |||||||| ||||||    
T  23144107 agagtcattaatgtaggtttggacgattacaaccactaacatgttttcattgactgtagtaaatgacctaggacttgttttaggttataaataggcttcc 23144206  T
Q  375 atcttcaagatataccttcattcttcacatcaccttttttctt 417  Q
    |||||||| | ||||||||||||||||| |||||| |||||||    
T  23144207 atcttcaacaaataccttcattcttcacttcacctcttttctt 23144249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 276 - 417
Target Start/End: Complemental strand, 627512 - 627371
Alignment:
Q  276 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 375  Q
    |||||||| ||| | | |||||||||||||||||||||||| |||||||||||||||| |||||| ||| |||||||||||||||||||||| ||||| |    
T  627512 agagccatcaatgtagctttggacggttacaaccactaacaagttttcattgactgtactaatgaactaagacttgttttaggctataaataggcttcta 627413  T
Q  376 tcttcaagatataccttcattcttcacatcaccttttttctt 417  Q
    ||||||| | |||||||||||||||||  ||||| |||||||    
T  627412 tcttcaacaaataccttcattcttcactccacctcttttctt 627371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 293 - 417
Target Start/End: Original strand, 586428 - 586552
Alignment:
Q  293 tttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatatacctt 392  Q
    |||||||||||||||||||||||| |||||||||||||||| |||||| ||| |||||||||||||||||||||| ||||| |||||||| | |||||||    
T  586428 tttggacggttacaaccactaacaagttttcattgactgtactaatgaactaagacttgttttaggctataaataggcttctatcttcaacaaatacctt 586527  T
Q  393 cattcttcacatcaccttttttctt 417  Q
    ||||||||||  ||||| |||||||    
T  586528 cattcttcactccacctcttttctt 586552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 310 - 421
Target Start/End: Complemental strand, 32947183 - 32947072
Alignment:
Q  310 actaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcacct 409  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||| |||||||| | ||||||||||||||||| ||||||    
T  32947183 actaacacgttttcattgactgtattaatgacctaggacttgttttaggctataagtaggcttctatcttcaacaaataccttcattcttcacttcacct 32947084  T
Q  410 tttttcttacat 421  Q
     |||||||||||    
T  32947083 cttttcttacat 32947072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 265 - 308
Target Start/End: Original strand, 42131889 - 42131932
Alignment:
Q  265 cggaaagattcagagccattaatatgggtttggacggttacaac 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  42131889 cggaaagattcagagccattaatatgggtttggacggttacaac 42131932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 316 - 415
Target Start/End: Complemental strand, 28284548 - 28284449
Alignment:
Q  316 acgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcaccttttttc 415  Q
    |||||||  ||||| ||| | |||||||||||| ||||||||||| |||||| | || ||||||||| | || |||||||||||||| |||||| |||||    
T  28284548 acgttttatttgaccgtagttatgatctaggacatgttttaggctgtaaataggtttgcatcttcaacaaattccttcattcttcacttcacctcttttc 28284449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 276 - 326
Target Start/End: Original strand, 13546259 - 13546309
Alignment:
Q  276 agagccattaatatgggtttggacggttacaaccactaacacgttttcatt 326  Q
    |||||||||||| || |||||||||||||||||||||||||  ||||||||    
T  13546259 agagccattaatgtgtgtttggacggttacaaccactaacagcttttcatt 13546309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 276 - 326
Target Start/End: Complemental strand, 13678214 - 13678164
Alignment:
Q  276 agagccattaatatgggtttggacggttacaaccactaacacgttttcatt 326  Q
    |||||||||||| || |||||||||||||||||||||||||  ||||||||    
T  13678214 agagccattaatgtgtgtttggacggttacaaccactaacagcttttcatt 13678164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 339 - 422
Target Start/End: Complemental strand, 11457100 - 11457017
Alignment:
Q  339 gatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacata 422  Q
    |||||| ||||||||||||| |||||| | |||||||||||||| | ||  |||| || ||||| | |||| ||||||||||||    
T  11457100 gatctatgacttgttttaggttataaacaggcttccatcttcaacaaatttcttcctttttcacttaacctcttttcttacata 11457017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 113; Significance: 5e-57; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 265 - 421
Target Start/End: Complemental strand, 8734842 - 8734687
Alignment:
Q  265 cggaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataa 364  Q
    ||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  8734842 cggaaagattcagagccattaatgtgggtttggacgattacaaccactaacacgttttcattgactgtattaatgacctaggacttgttttaggctataa 8734743  T
Q  365 ataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacat 421  Q
    ||| ||||||||| | || | ||||||||||||||||| |||||| |||||||||||    
T  8734742 ataggcttccatc-tgaacaaataccttcattcttcacttcacctcttttcttacat 8734687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 265 - 417
Target Start/End: Complemental strand, 27114453 - 27114301
Alignment:
Q  265 cggaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataa 364  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  27114453 cggaaagattcagagccattaatgtgggtttggacggttacaaccaccaacacgttttcattgactgtattaatgacataggacttgttttaggctataa 27114354  T
Q  365 ataagcttccatcttcaagatataccttcattcttcacatcaccttttttctt 417  Q
    ||| |||||||||||||| | ||| ||||||||||||| |||||| |||||||    
T  27114353 ataggcttccatcttcaacaaatatcttcattcttcacttcacctcttttctt 27114301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 268 - 417
Target Start/End: Complemental strand, 37012970 - 37012821
Alignment:
Q  268 aaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaata 367  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||    
T  37012970 aaagattcagagccattaatgtgggtttggacggttacaaccactaacacgttttcattgactgtatgaatgacctagaacttgttttaggctataaata 37012871  T
Q  368 agcttccatcttcaagatataccttcattcttcacatcaccttttttctt 417  Q
     |||||||||||||| | |||| |||||||||||| |||||| |||||||    
T  37012870 ggcttccatcttcaacaaatactttcattcttcacttcacctcttttctt 37012821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 264 - 421
Target Start/End: Original strand, 13822057 - 13822217
Alignment:
Q  264 tcggaaagattcagagccattaatatgggtttggacggttacaa---ccactaacacgttttcattgactgtattaatgatctaggacttgttttaggct 360  Q
    |||||||||||||||||||||||| ||| |||| ||||||||||   ||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  13822057 tcggaaagattcagagccattaatgtggatttgaacggttacaacaaccactaacacgttttcattgactgtattaatgatctatgacttgttttaggct 13822156  T
Q  361 ataaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacat 421  Q
    ||||||| | |||||||||||| | ||||||||||||||||| |||||| |||||||||||    
T  13822157 ataaataggtttccatcttcaacaaataccttcattcttcacctcacctcttttcttacat 13822217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 265 - 421
Target Start/End: Complemental strand, 8197560 - 8197401
Alignment:
Q  265 cggaaagattcagagccattaatatgggtttggacggttacaac---cactaacacgttttcattgactgtattaatgatctaggacttgttttaggcta 361  Q
    |||||||||| |||||||||||| ||||||||||||||||||||   |||||||||||||||||||||||||||||||| |||||||||||||||| |||    
T  8197560 cggaaagatttagagccattaatgtgggtttggacggttacaacaaccactaacacgttttcattgactgtattaatgacctaggacttgttttagacta 8197461  T
Q  362 taaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacat 421  Q
    |||||| |||||||||||||| | ||||||||||||||||| | |||| |||||||||||    
T  8197460 taaataggcttccatcttcaacaaataccttcattcttcactttacctattttcttacat 8197401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 265 - 421
Target Start/End: Complemental strand, 12785306 - 12785147
Alignment:
Q  265 cggaaagattcagagccattaatatgggtttggacggttacaac---cactaacacgttttcattgactgtattaatgatctaggacttgttttaggcta 361  Q
    |||||||||||| |||| ||||| ||||||||||||||||||||   |||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  12785306 cggaaagattcatagccgttaatgtgggtttggacggttacaacaaccactaacacgttttcattgactgtattaatgacctaggacttgttttaggcta 12785207  T
Q  362 taaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacat 421  Q
    |||||| ||||| |||||||| | ||||||||||||||||| |||||| |||||||||||    
T  12785206 taaataggcttcaatcttcaacaaataccttcattcttcacttcacctcttttcttacat 12785147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 276 - 417
Target Start/End: Original strand, 37030261 - 37030402
Alignment:
Q  276 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 375  Q
    |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  ||||||    
T  37030261 agagccattaatgtgggtttggatggttacaaccactaacacgttttcattgactgtattaatgacctaggacttgttttaggctataaatagacttcca 37030360  T
Q  376 tcttcaagatataccttcattcttcacatcaccttttttctt 417  Q
    ||||||| | ||||||||||||||||| |||||| |||||||    
T  37030361 tcttcaacaaataccttcattcttcacttcacctcttttctt 37030402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 268 - 421
Target Start/End: Complemental strand, 18809130 - 18808974
Alignment:
Q  268 aaagattcagagccattaatatgggtttggacggttacaac---cactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataa 364  Q
    |||||||||||||||||||| | ||||||||||||||||||   |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  18809130 aaagattcagagccattaatgtaggtttggacggttacaacaaccactaacacgttttcattgactgtattaatgacctatgacttgttttaggctataa 18809031  T
Q  365 ataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacat 421  Q
    |||  ||||||||||||| | ||||||||||||||||| |||||| |||||||||||    
T  18809030 atagtcttccatcttcaacaaataccttcattcttcacttcacctcttttcttacat 18808974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 265 - 421
Target Start/End: Complemental strand, 12723823 - 12723664
Alignment:
Q  265 cggaaagattcagagccattaatatgggtttggacggttacaac---cactaacacgttttcattgactgtattaatgatctaggacttgttttaggcta 361  Q
    |||||||||||| || | ||||| ||||||||||||||||||||   |||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  12723823 cggaaagattcatagtcgttaatgtgggtttggacggttacaacaaccactaacacgttttcattgactgtattaatgacctaggacttgttttaggcta 12723724  T
Q  362 taaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacat 421  Q
    |||||| | || ||||||||| | ||||||||||||||||| |||||| |||||||||||    
T  12723723 taaataggttttcatcttcaacaaataccttcattcttcacttcacctcttttcttacat 12723664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 265 - 417
Target Start/End: Complemental strand, 3556770 - 3556618
Alignment:
Q  265 cggaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataa 364  Q
    ||||||||||| ||||| ||| | |||||||||||| |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  3556770 cggaaagattcggagccgttattgtgggtttggacgattacaagcactaacacgttttcattgactgtattaatgacctaggacttgttttaggctataa 3556671  T
Q  365 ataagcttccatcttcaagatataccttcattcttcacatcaccttttttctt 417  Q
    ||| ||||||||||| || | || |||||||||||||| |||||| |||||||    
T  3556670 atatgcttccatctttaacaaattccttcattcttcacttcacctcttttctt 3556618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 276 - 417
Target Start/End: Complemental strand, 26279172 - 26279031
Alignment:
Q  276 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 375  Q
    |||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||||||||||||||| |||||||    
T  26279172 agagtcattaatgtaggtttggacggttacaaccactaacacgttttcattgactgtactaatgacccaggacttgttttaggctataaataggcttcca 26279073  T
Q  376 tcttcaagatataccttcattcttcacatcaccttttttctt 417  Q
    ||||||| | ||||||||||||||||| |||| | |||||||    
T  26279072 tcttcaacaaataccttcattcttcacttcacttcttttctt 26279031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 276 - 417
Target Start/End: Complemental strand, 37883562 - 37883421
Alignment:
Q  276 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 375  Q
    |||||||||||| |||||||||||||||||||||||||||| ||||||||||||| || |||||| ||| ||||||||||| |||||||||| |||||||    
T  37883562 agagccattaatgtgggtttggacggttacaaccactaacatgttttcattgactatagtaatgacctaagacttgttttaagctataaataggcttcca 37883463  T
Q  376 tcttcaagatataccttcattcttcacatcaccttttttctt 417  Q
    ||||||| | ||||||||||||||||| |||| | |||||||    
T  37883462 tcttcaacaaataccttcattcttcacttcacatcttttctt 37883421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 265 - 421
Target Start/End: Original strand, 38679438 - 38679597
Alignment:
Q  265 cggaaagattcagagccattaatatgggtttggacggttacaa---ccactaacacgttttcattgactgtattaatgatctaggacttgttttaggcta 361  Q
    ||||||||||||||||||||||| ||| |||||||||||||||   |||||||||| ||| ||||||||||||||||||  |||||||||||||||||||    
T  38679438 cggaaagattcagagccattaatgtggatttggacggttacaacaaccactaacacttttgcattgactgtattaatgacttaggacttgttttaggcta 38679537  T
Q  362 taaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacat 421  Q
    |||||| ||||| |||||||| | ||| || |||||||||| |||||| |||||||||||    
T  38679538 taaataggcttcaatcttcaacaaatatctacattcttcacttcacctcttttcttacat 38679597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 276 - 417
Target Start/End: Original strand, 25977135 - 25977272
Alignment:
Q  276 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 375  Q
    |||| ||||||| | |||||||||| |||||||||||||||||||||||||||||||| ||||||  |||||||||||||||| |||||||| |||||||    
T  25977135 agagtcattaatgtaggtttggacgattacaaccactaacacgttttcattgactgtagtaatgacttaggacttgttttaggttataaataggcttcca 25977234  T
Q  376 tcttcaagatataccttcattcttcacatcaccttttttctt 417  Q
    ||||||    | ||||||||||||||| |||||| |||||||    
T  25977235 tcttca----acaccttcattcttcacttcacctcttttctt 25977272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 291 - 417
Target Start/End: Original strand, 9715327 - 9715453
Alignment:
Q  291 ggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatatacc 390  Q
    ||||||||||||||||||||| ||||||||||||||||||| | |||||| ||| ||||| ||||||||||||||||  ||||||||||||| | ||| |    
T  9715327 ggtttggacggttacaaccaccaacacgttttcattgactgcactaatgacctatgactttttttaggctataaatagacttccatcttcaacaaatagc 9715426  T
Q  391 ttcattcttcacatcaccttttttctt 417  Q
    |||||||||||| |||||| |||||||    
T  9715427 ttcattcttcacttcacctcttttctt 9715453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 276 - 417
Target Start/End: Original strand, 11719938 - 11720080
Alignment:
Q  276 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 375  Q
    |||||||||||| | |||||| |||||||| ||||||||||||||||||||||||||| |||||| ||||||||| |||||||| |||||||  ||| ||    
T  11719938 agagccattaatgtaggtttgaacggttacgaccactaacacgttttcattgactgtactaatgacctaggacttattttaggccataaatagactttca 11720037  T
Q  376 tcttcaagatataccttcattc-ttcacatcaccttttttctt 417  Q
    ||||||| | |||||||||||| ||||| |||||| |||||||    
T  11720038 tcttcaacaaataccttcattctttcacttcacctcttttctt 11720080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 267 - 417
Target Start/End: Original strand, 16513581 - 16513733
Alignment:
Q  267 gaaagattcagagccattaatatgggtttggacggtt--acaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataa 364  Q
    ||||||||||||||||||| | ||| |||| ||| |   |||||||||||||||||||||| |||||||||||||| ||| |||||||||||  ||||||    
T  16513581 gaaagattcagagccattattgtggttttgtacgttacaacaaccactaacacgttttcatcgactgtattaatgacctatgacttgttttaaactataa 16513680  T
Q  365 ataagcttccatcttcaagatataccttcattcttcacatcaccttttttctt 417  Q
    ||| ||||| || ||||| | ||||||||||||||||| |||||| |||||||    
T  16513681 ataggcttcaattttcaacaaataccttcattcttcacttcacctcttttctt 16513733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 265 - 367
Target Start/End: Original strand, 8299208 - 8299313
Alignment:
Q  265 cggaaagattcagagccattaatatgggtttggacggttacaac---cactaacacgttttcattgactgtattaatgatctaggacttgttttaggcta 361  Q
    ||||||||||||||| ||||||| |||||||| |||||||||||   ||| |||||||||| ||||||||||||||||| ||| || |||||||||||||    
T  8299208 cggaaagattcagagtcattaatttgggtttgaacggttacaacaaccaccaacacgtttttattgactgtattaatgacctaagaattgttttaggcta 8299307  T
Q  362 taaata 367  Q
    ||||||    
T  8299308 taaata 8299313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 352 - 421
Target Start/End: Complemental strand, 15858880 - 15858811
Alignment:
Q  352 ttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacat 421  Q
    |||||||||||||||| |||||||||||||| | |||||||||||||||||||||||| |||||||||||    
T  15858880 ttttaggctataaataggcttccatcttcaacaaataccttcattcttcacatcacctcttttcttacat 15858811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 330 - 419
Target Start/End: Complemental strand, 23252558 - 23252469
Alignment:
Q  330 tgtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttac 419  Q
    |||| |||| || |||||||| |||||| |||||||||| ||| |||||| || | || |||||||||||||| | |||| |||||||||    
T  23252558 tgtaataattatttaggacttattttagactataaataaacttgcatcttaaacaaattccttcattcttcactttacctcttttcttac 23252469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 421
Target Start/End: Complemental strand, 27495261 - 27495154
Alignment:
Q  314 acacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcaccttttt 413  Q
    |||||||||  ||||||||| | || | ||| |||| |||| ||||||||||||  ||| ||||||||| |  |  ||||||||||||| |||||| |||    
T  27495261 acacgttttagttgactgtaattattacctatgactggtttaaggctataaatagactttcatcttcaacaattttcttcattcttcacttcacctcttt 27495162  T
Q  414 tcttacat 421  Q
    ||||||||    
T  27495161 tcttacat 27495154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 417
Target Start/End: Original strand, 2606076 - 2606129
Alignment:
Q  364 aataagcttccatcttcaagatataccttcattcttcacatcaccttttttctt 417  Q
    |||| |||||||||||||| | ||||||||||||||||| |||| | |||||||    
T  2606076 aataggcttccatcttcaacaaataccttcattcttcacttcacatcttttctt 2606129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 325 - 421
Target Start/End: Original strand, 27690482 - 27690578
Alignment:
Q  325 ttgactgtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacat 421  Q
    ||||||||| | ||| |||||||||  ||| |||||||||||| |||| ||||||||| |  | | |||||||||||| || | | |||||||||||    
T  27690482 ttgactgtagttatggtctaggactgatttaaggctataaatatgcttgcatcttcaacaatttcattcattcttcacttcccatcttttcttacat 27690578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 106; Significance: 7e-53; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 265 - 421
Target Start/End: Original strand, 31722857 - 31723016
Alignment:
Q  265 cggaaagattcagagccattaatatgggtttggacggttacaa---ccactaacacgttttcattgactgtattaatgatctaggacttgttttaggcta 361  Q
    ||||||||||||||||||||||| |||||||||| ||||||||   ||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  31722857 cggaaagattcagagccattaatgtgggtttggatggttacaacaaccactaacacgttttcattgactgtattaatgacctaggacttgttttaggcta 31722956  T
Q  362 taaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacat 421  Q
    |||||| |||||||||||||| | | ||||||||||||||| ||| || |||||||||||    
T  31722957 taaataggcttccatcttcaacaaagaccttcattcttcacttcatctcttttcttacat 31723016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 277 - 417
Target Start/End: Complemental strand, 31318671 - 31318531
Alignment:
Q  277 gagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttccat 376  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |||| |||    
T  31318671 gagccattaatgtgggtttggacggttacaaccactaacacgttttcattgactgtagtaatgacctaggacttgttttaggctataaataggctttcat 31318572  T
Q  377 cttcaagatataccttcattcttcacatcaccttttttctt 417  Q
    |||||| | ||||||||||||||||| |||||| |||||||    
T  31318571 cttcaacaaataccttcattcttcacttcacctcttttctt 31318531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 267 - 417
Target Start/End: Complemental strand, 31271496 - 31271346
Alignment:
Q  267 gaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaat 366  Q
    ||||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||||| ||||||||||||| ||| |||||||||||||||||||||    
T  31271496 gaaagattcagagccattaatgtgggtttggacgattacaaccacttacacgttttcattaactgtattaatgacctatgacttgttttaggctataaat 31271397  T
Q  367 aagcttccatcttcaagatataccttcattcttcacatcaccttttttctt 417  Q
    | |||||||||||||| | |||| |||||| ||||| |||||| |||||||    
T  31271396 aggcttccatcttcaacaaatactttcatttttcacttcacctcttttctt 31271346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 265 - 414
Target Start/End: Original strand, 9304942 - 9305091
Alignment:
Q  265 cggaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataa 364  Q
    ||||||||||||||||||||| | ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  9304942 cggaaagattcagagccattattgtgggttttgacggttacaaccactaacacgttttcattgactgtattaatgacctaggacttgttttaggctataa 9305041  T
Q  365 ataagcttccatcttcaagatataccttcattcttcacatcacctttttt 414  Q
    ||| ||||  | ||| || | |||||||||||| |||| |||||| ||||    
T  9305042 ataggcttttaccttaaacaaataccttcattcatcacttcacctctttt 9305091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 268 - 421
Target Start/End: Complemental strand, 439180 - 439024
Alignment:
Q  268 aaagattcagagccattaatatgggtttggacggttacaac---cactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataa 364  Q
    ||||||||| || ||||||| ||||||||||||||||||||   ||||||||||||||| |||||| || |||||| |||||||||||||||||||||||    
T  439180 aaagattcaaagtcattaatgtgggtttggacggttacaacaaccactaacacgttttcgttgactatactaatgacctaggacttgttttaggctataa 439081  T
Q  365 ataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacat 421  Q
    |||  ||||||||||||| | ||||||||||||||||| |||||| |||||||||||    
T  439080 atagacttccatcttcaacaaataccttcattcttcacttcacctcttttcttacat 439024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 265 - 417
Target Start/End: Complemental strand, 16395467 - 16395312
Alignment:
Q  265 cggaaagattcagagccattaatatgggtttggacggttacaac---cactaacacgttttcattgactgtattaatgatctaggacttgttttaggcta 361  Q
    |||||| ||||| |||||||||| |||||||||| |||||||||   |||||||||||||||||||||| |||||||||  |||||||||||||||||||    
T  16395467 cggaaatattcaaagccattaatgtgggtttggatggttacaacaaccactaacacgttttcattgactatattaatgacataggacttgttttaggcta 16395368  T
Q  362 taaataagcttccatcttcaagatataccttcattcttcacatcaccttttttctt 417  Q
    |||||| ||||||||| |||| | |||| |||||||||||| |||||| |||||||    
T  16395367 taaataggcttccatcgtcaacaaatactttcattcttcacttcacctcttttctt 16395312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 267 - 417
Target Start/End: Complemental strand, 303904 - 303751
Alignment:
Q  267 gaaagattcagagccattaatatgggtttggacggtta---caaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctata 363  Q
    |||| |||||||| ||||||| |  |||||||||||||   ||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||    
T  303904 gaaacattcagagtcattaatgtaagtttggacggttataacaaccaccaacacgttttcattgattgtattaatgacctaggacttgttttaggctata 303805  T
Q  364 aataagcttccatcttcaagatataccttcattcttcacatcaccttttttctt 417  Q
    |||| |||||||| ||||| | ||||||||||||||||| |||||| |||||||    
T  303804 aataggcttccattttcaacaaataccttcattcttcacttcacctcttttctt 303751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 293 - 421
Target Start/End: Complemental strand, 20818653 - 20818525
Alignment:
Q  293 tttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatatacctt 392  Q
    ||||||||||||  ||||| |||||||||||||||| |||| | ||||  || ||||| |||||| |||||||||  ||||||||||||| | || ||||    
T  20818653 tttggacggttagcaccacaaacacgttttcattgattgtacttatgacgtatgacttattttagactataaatatacttccatcttcaacaaattcctt 20818554  T
Q  393 cattcttcacatcaccttttttcttacat 421  Q
    ||||||| || |||||| |||||||||||    
T  20818553 cattctttacttcacctcttttcttacat 20818525  T

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Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 325 - 419
Target Start/End: Complemental strand, 17519942 - 17519848
Alignment:
Q  325 ttgactgtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttac 419  Q
    ||||||||| | |||||||| |||||||||||||||||||||| | || ||| ||||||| || ||| |||||||||| ||| || ||| |||||    
T  17519942 ttgactgtagttatgatctatgacttgttttaggctataaatatgtttgcatgttcaagaaattcctccattcttcacttcatctctttccttac 17519848  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 325 - 421
Target Start/End: Original strand, 6837248 - 6837344
Alignment:
Q  325 ttgactgtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacat 421  Q
    ||||||||| | |||||||||||||  ||| || ||||||||| |  |  |||||||| |  | |||||||||||||| |||||| |||||||||||    
T  6837248 ttgactgtagttatgatctaggactgatttaagactataaatagggctggatcttcaataatttccttcattcttcacttcacctcttttcttacat 6837344  T

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Target: scaffold1301 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: scaffold1301
Description:

Target: scaffold1301; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 265 - 415
Target Start/End: Complemental strand, 1804 - 1654
Alignment:
Q  265 cggaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataa 364  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||  |||||| ||||||||||||||||  || | |||||||||| ||||||    
T  1804 cggaaagattcagagccattaatgtgggtttggacggttacaaccactaacttgttttcgttgactgtattaatgacttaaggcttgttttagactataa 1705  T
Q  365 ataagcttccatcttcaagatataccttcattcttcacatcaccttttttc 415  Q
    ||| ||||||| |||||| | ||||||||||||||||  |||||| |||||    
T  1704 ataggcttccaacttcaacaaataccttcattcttcagttcacctattttc 1654  T

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Target: scaffold0054 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 321 - 421
Target Start/End: Original strand, 19067 - 19167
Alignment:
Q  321 ttcattgactgtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttaca 420  Q
    ||||||||||||| | |||| ||| |||||||||||||||||||||| |||  ||||||||| | || |||||||||||||| ||| || ||||||||||    
T  19067 ttcattgactgtacttatgacctaagacttgttttaggctataaataggctctcatcttcaacaaattccttcattcttcacttcaactcttttcttaca 19166  T
Q  421 t 421  Q
    |    
T  19167 t 19167  T

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Target: scaffold0160 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 337 - 419
Target Start/End: Original strand, 17301 - 17383
Alignment:
Q  337 atgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttac 419  Q
    ||||||||||||||||||||||||||||||| | ||  |||||||| | || | |||||||||||| |||||| |||||||||    
T  17301 atgatctaggacttgttttaggctataaataggtttgtatcttcaacaaattctttcattcttcacttcacctattttcttac 17383  T

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Target: scaffold0048 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 337 - 419
Target Start/End: Complemental strand, 51916 - 51836
Alignment:
Q  337 atgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttac 419  Q
    ||||||||||||||||||||||||||||||| | || ||||||||  | || ||||||||||| || |||||| |||||||||    
T  51916 atgatctaggacttgttttaggctataaataggtttgcatcttca--acattccttcattcttaacttcacctcttttcttac 51836  T

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Target: scaffold0210 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0210
Description:

Target: scaffold0210; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 325 - 421
Target Start/End: Original strand, 8159 - 8255
Alignment:
Q  325 ttgactgtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacat 421  Q
    |||| |||||| ||||||||||||| |||| ||||||||| || ||||  ||||| || |  | |||||||||||||| |||||| |||||||||||    
T  8159 ttgattgtatttatgatctaggactggtttaaggctataactaggcttggatctttaacaatttccttcattcttcacttcacctcttttcttacat 8255  T

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Target: scaffold0001 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 313 - 419
Target Start/End: Original strand, 427220 - 427326
Alignment:
Q  313 aacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcacctttt 412  Q
    ||||||||||  ||||||| | | ||||||||||| | || | |||||||||||| |||| ||||||||| |  | |||||||||||||| |||||| ||    
T  427220 aacacgttttatttgactgcacttatgatctaggaatggtctaaggctataaataggcttgcatcttcaacaatttccttcattcttcacttcacctctt 427319  T
Q  413 ttcttac 419  Q
    || ||||    
T  427320 ttgttac 427326  T

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