View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1345_high_88 (Length: 433)
Name: NF1345_high_88
Description: NF1345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1345_high_88 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 157; Significance: 2e-83; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 160 - 404
Target Start/End: Complemental strand, 40857777 - 40857518
Alignment:
| Q |
160 |
ttttttctcgaaaatgtctttggggattttcgtattacataattcaaacaaagtgtatttttgaaagnnnnnnntaggacgcacgaaaaagacacggggt |
259 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||| |
|
|
| T |
40857777 |
ttttttctcgaaaatgtctttggggattttcggattacataattcaaacaaagtgtatttttgaaagaaaaaaataagacgcacgaaaaagacatggggt |
40857678 |
T |
|
| Q |
260 |
ggaaaaaataatagtcgtgatcaaaagactatacagattgaacttgaaagcccgt---------------tggaatccaagacaaattcgattggaagtt |
344 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |
|
|
| T |
40857677 |
ggaaaaaataacagtcgtgatcaaaagactatacagattgaacttgaaagaccgttgggttatttatttgtggaatccaagacaaattcgattggaagtt |
40857578 |
T |
|
| Q |
345 |
actattagactaagtaaattgctctctagacgacgttcactcattcgttcatgtacggca |
404 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||| |
|
|
| T |
40857577 |
actattagactaagtaaattgctctatagacgacgtttacccattcgttcatgtacggca |
40857518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 19 - 113
Target Start/End: Complemental strand, 40857880 - 40857786
Alignment:
| Q |
19 |
aatgtaattgtaccgccaaattggcccaatctgtttttcagactaataattaagcccagactgatactgttgttcttagacccgttttagcttct |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
40857880 |
aatgtaattgtaccgccaaattggcccaatctgtttttcagactaataattaagcccagactgatactgctgttcttagacccgttttagcttct |
40857786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University