View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1345_high_92 (Length: 427)
Name: NF1345_high_92
Description: NF1345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1345_high_92 |
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| [»] scaffold0117 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 170; Significance: 4e-91; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 200 - 400
Target Start/End: Complemental strand, 496237 - 496039
Alignment:
| Q |
200 |
cattatatcgtagtgcattgtttgcctaggccaaacaacaaagaatgtgaaaatgatgcagatgcagtaatatgtatattactacctgattttgccacat |
299 |
Q |
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| T |
496237 |
cattatatcgtagtgcattgtttgcctaggccaaacaacaaagaatgtgaaaatgatgcagatgcagtaatatgtatc--actaactgattttgccacat |
496140 |
T |
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| Q |
300 |
gtggtgatcatggtacacgaaaggactgtcacaaattggttcgcggcagaaaaaatcttgcacttgcgtatttgtagtataggatttaatgtgaaaatat |
399 |
Q |
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| T |
496139 |
gtggtgatcatagtacacgaaaggactgtcacaaatcggttcgcggcagaaaaaatcttgcacttgcgtattagtagtataggatttaatgtgaaaatat |
496040 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 16 - 189
Target Start/End: Complemental strand, 496530 - 496358
Alignment:
| Q |
16 |
atgcataaacatttctatatgattatacaaattcatacgtaattcattatgaaagttactctaagattaagaaatgttcattgaatcaatccactagtaa |
115 |
Q |
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| T |
496530 |
atgcataaacatttctatatgattatacaaattcatacgtaattcattatgaa-gttactctaagattaagaaatgttcgttgaatcaatccactagtaa |
496432 |
T |
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| Q |
116 |
ttgttagccctaacatcgcacctaaacaggtgcgcaaaaattccactaaatatatactaactataaacaagaat |
189 |
Q |
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| T |
496431 |
ttgttaaccctaacatcgcacctaaacaagtgcgcaaaaattccactaaatatatactaactataaacaagaat |
496358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 260 - 375
Target Start/End: Complemental strand, 888438 - 888323
Alignment:
| Q |
260 |
gatgcagtaatatgtatattactacctgattttgccacatgtggtgatcatggtacacgaaaggactgtcacaaattggttcgcggcagaaaaaatcttg |
359 |
Q |
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| T |
888438 |
gatgcagtaatatgtatatcactacctgattttgccacatttgatgatcatggtacaagaaaggactgtcacaaattggttcatgtcagaaaaattcctg |
888339 |
T |
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| Q |
360 |
cacttgcgtatttgta |
375 |
Q |
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| T |
888338 |
cgcctgcgtatttgta |
888323 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0117 (Bit Score: 88; Significance: 4e-42; HSPs: 3)
Name: scaffold0117
Description:
Target: scaffold0117; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 68 - 183
Target Start/End: Original strand, 16027 - 16141
Alignment:
| Q |
68 |
aagttactctaagattaagaaatgttcattgaatcaatccactagtaattgttagccctaacatcgcacctaaacaggtgcgcaaaaattccactaaata |
167 |
Q |
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| T |
16027 |
aagttactctaagattaagaaac-ttcgttgaatccatccactagtaattgttaaccctaacatcgcacctaaacaagtgcgcaaaaattccactaaata |
16125 |
T |
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| Q |
168 |
tatactaactataaac |
183 |
Q |
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|||||||||||||||| |
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| T |
16126 |
tatactaactataaac |
16141 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0117; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 265 - 357
Target Start/End: Original strand, 16373 - 16465
Alignment:
| Q |
265 |
agtaatatgtatattactacctgattttgccacatgtggtgatcatggtacacgaaaggactgtcacaaattggttcgcggcagaaaaaatct |
357 |
Q |
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| T |
16373 |
agtaatatgtatattactacctgattttgccacatgtgatgatcatggtacaagaaaggactgtcacaaattggttcatggcagaaataatct |
16465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0117; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 200 - 263
Target Start/End: Original strand, 16269 - 16331
Alignment:
| Q |
200 |
cattatatcgtagtgcattgtttgcctaggccaaacaacaaagaatgtgaaaatgatgcagatg |
263 |
Q |
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| T |
16269 |
cattatattgtagtgcattgttttcctacgccaaacaa-aaagaatgtgaaaatgatgcagatg |
16331 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 16 - 118
Target Start/End: Complemental strand, 12572904 - 12572802
Alignment:
| Q |
16 |
atgcataaacatttctatatgattatacaaattcatacgtaattcattatgaaagttactctaagattaagaaatgttcattgaatcaatccactagtaa |
115 |
Q |
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||||||||||||| ||||||| |||||| | |||||| ||||||||||| || || |||||||| |||||||||||||| ||||| ||||||||||| |
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| T |
12572904 |
atgcataaacattcatatatgaatatacagactcatacacaattcattatggaaattgttctaagatgaagaaatgttcattaaatcattccactagtaa |
12572805 |
T |
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| Q |
116 |
ttg |
118 |
Q |
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||| |
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| T |
12572804 |
ttg |
12572802 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 16 - 117
Target Start/End: Original strand, 20010066 - 20010167
Alignment:
| Q |
16 |
atgcataaacatttctatatgattatacaaattcatacgtaattcattatgaaagttactctaagattaagaaatgttcattgaatcaatccactagtaa |
115 |
Q |
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|||||||||||||| ||||||| |||||||| || ||| |||| | |||| ||||| ||||||||| |||||| | |||| |||||| | ||||||||| |
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| T |
20010066 |
atgcataaacatttgtatatgaatatacaaactcgtacacaattaagtatgtaagtttctctaagatgaagaaacgctcatcgaatcatttcactagtaa |
20010165 |
T |
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| Q |
116 |
tt |
117 |
Q |
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|| |
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| T |
20010166 |
tt |
20010167 |
T |
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