View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1345_high_95 (Length: 421)
Name: NF1345_high_95
Description: NF1345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1345_high_95 |
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Alignment Details
Target: chr7 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 1 - 394
Target Start/End: Original strand, 45079223 - 45079616
Alignment:
| Q |
1 |
caattggactgttgttaaggcatgtaaacaagttttctgtttgtccattttaacattgtttattaacaagatggcttgtgaacaaaaattaataggtgta |
100 |
Q |
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| T |
45079223 |
caattggactgttgttaaggcatgtaaacaagttttctgtttgtccattttaacattgtttattaacaagatggcttgtgaacaaaaattaataggtgta |
45079322 |
T |
|
| Q |
101 |
ctaatttgttctgaacaggatatggttcaagttcctgttgtattcataattggagcatttataccagcaactatgattgcagtgctttattactttgacc |
200 |
Q |
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| T |
45079323 |
ctaatttgttctgaacaggatatggttcaagttcctgttgtattcataattggagcatttataccagcaactatgattgcagtgctttattactttgacc |
45079422 |
T |
|
| Q |
201 |
acagtgtggcatctcagctttctcagcagaaagagttcaatttgagaaagccatcttcttaccattatgatttgctccttttgggatttttggtatgaca |
300 |
Q |
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| T |
45079423 |
acagtgtggcatctcagctttctcagcagaaagagttcaatttgagaaagccatcttcttaccattatgatttgctccttttgggatttttggtatgaca |
45079522 |
T |
|
| Q |
301 |
cttcaatatgtcaattcctagttcattaaatttcaatttgcttaattctttttctaatggtaacatccatgtttcttgctggaagacattattg |
394 |
Q |
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| T |
45079523 |
cttcaatatgtcaattcctagttcattaaatttcaatttgcttaattctttttctaatggtaacatccatatttcttgctggaagacattattg |
45079616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 69; Significance: 8e-31; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 152 - 288
Target Start/End: Original strand, 12307614 - 12307750
Alignment:
| Q |
152 |
ggagcatttataccagcaactatgattgcagtgctttattactttgaccacagtgtggcatctcagctttctcagcagaaagagttcaatttgagaaagc |
251 |
Q |
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| T |
12307614 |
ggagcatttattccagctacgatgattgccgtgctttactattttgatcatagtatagcatctcagctttctcagcagaaagagttcaatttaagaaaac |
12307713 |
T |
|
| Q |
252 |
catcttcttaccattatgatttgctccttttgggatt |
288 |
Q |
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| T |
12307714 |
caccttctttccactatgatttacttcttttgggatt |
12307750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 149 - 270
Target Start/End: Complemental strand, 34925943 - 34925822
Alignment:
| Q |
149 |
attggagcatttataccagcaactatgattgcagtgctttattactttgaccacagtgtggcatctcagctttctcagcagaaagagttcaatttgagaa |
248 |
Q |
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|||||||||||||||||||| || |||||||| |||||||| |||||||| |||||||| || || || ||| | ||||| || ||||||||| | |||| |
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| T |
34925943 |
attggagcatttataccagcgacaatgattgctgtgctttactactttgatcacagtgttgcgtcacaacttgcccagcaaaaggagttcaatataagaa |
34925844 |
T |
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| Q |
249 |
agccatcttcttaccattatga |
270 |
Q |
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| || || ||||| |||||||| |
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| T |
34925843 |
aaccctcatcttatcattatga |
34925822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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