View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1345_low_101 (Length: 419)
Name: NF1345_low_101
Description: NF1345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1345_low_101 |
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Alignment Details
Target: chr7 (Bit Score: 349; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 411
Target Start/End: Original strand, 17821081 - 17821493
Alignment:
| Q |
1 |
tcgtgggttacaagcaaagatcggaggcttttggagaccgcggttggggacatagaggcaaatgttgtcgtggctcaggatgggagtggcaagttcaaga |
100 |
Q |
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| T |
17821081 |
tcgtgggttacaagcaaagatcggaggcttttggagaccgcggttggggacataaaggcaaatgttgtcgtagctcaggatgggagtggcaagttcaaga |
17821180 |
T |
|
| Q |
101 |
ctgtggctgaggctgtggcatctgcacctgacaaaggtaagacaaagtatgttatctatgtgaaaaacggaacatacaaagagaacgtagaaattggttc |
200 |
Q |
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| T |
17821181 |
ctgtggctgaggctgtggcatctgcacctgacaacggtaagacaaagtatgttatctatgtgaaaaagggaacatacaaagagaacgtagaaattggttc |
17821280 |
T |
|
| Q |
201 |
gnnnnnnncaaacgtgatgctcgttggtgatggaatggatgcaacaataatcacaggaaacttaaattttatcgatgggacaacgaccttcaaaagttca |
300 |
Q |
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| T |
17821281 |
gaaaaaaacaaatgtgatgctcgttggtgatggaatggatgcaacaataatcacaggaaacttaaattttatcgatgggacaacgaccttcaaaagttca |
17821380 |
T |
|
| Q |
301 |
actgttggtatgaaccttccactttttgtaattaccatttcattttcatgtatacttataaattttgtcttcttttcttgaactctcttcaatt--tcta |
398 |
Q |
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| T |
17821381 |
actgttggtatgaaccttccactttttgtatttaccatttcattttcatgtatacttataaattttgtcttcttttcttgaactcgcttcaatttctcta |
17821480 |
T |
|
| Q |
399 |
agtcatattcttc |
411 |
Q |
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| T |
17821481 |
agtaatattcttc |
17821493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 43 - 312
Target Start/End: Original strand, 17776656 - 17776925
Alignment:
| Q |
43 |
gttggggacatagaggcaaatgttgtcgtggctcaggatgggagtggcaagttcaagactgtggctgaggctgtggcatctgcacctgacaaaggtaaga |
142 |
Q |
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|||||||| ||| |||| |||||||| ||||||||||| || || ||||||||||||||||||||| | ||||| ||||||||||| ||||| ||||||| |
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| T |
17776656 |
gttggggatataaaggccaatgttgtggtggctcaggacggcagcggcaagttcaagactgtggctcaagctgtagcatctgcaccagacaacggtaaga |
17776755 |
T |
|
| Q |
143 |
caaagtatgttatctatgtgaaaaacggaacatacaaagagaacgtagaaattggttcgnnnnnnncaaacgtgatgctcgttggtgatggaatggatgc |
242 |
Q |
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||| ||||||||| ||||||||||| |||||||||||||||||| | |||||||| | |||| |||||||| || |||||||| |||||||| |
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| T |
17776756 |
caaggtatgttatatatgtgaaaaagggaacatacaaagagaacattgaaattggcaagaaaaagacaaatgtgatgcttgtgggtgatggtatggatgc |
17776855 |
T |
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| Q |
243 |
aacaataatcacaggaaacttaaattttatcgatgggacaacgaccttcaaaagttcaactgttggtatg |
312 |
Q |
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| T |
17776856 |
aacaataatcacaggcagcttaaatttcatcgatggaacaaccaccttcaaaagtgcaactgttggtatg |
17776925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 4 - 313
Target Start/End: Original strand, 17807309 - 17807618
Alignment:
| Q |
4 |
tgggttacaagcaaagatcggaggcttttggagaccgcggttggggacatagaggcaaatgttgtcgtggctcaggatgggagtggcaagttcaagactg |
103 |
Q |
| |
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||||| ||||| |||||||| |||||||||||| | | ||||| ||| || |||| |||||||| |||||| | || |||||||||||||||||||||| |
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| T |
17807309 |
tgggtaacaagtaaagatcgaaggcttttggagtcttcagttggagacgtaaaggccaatgttgtggtggctaaagacgggagtggcaagttcaagactg |
17807408 |
T |
|
| Q |
104 |
tggctgaggctgtggcatctgcacctgacaaaggtaagacaaagtatgttatctatgtgaaaaacggaacatacaaagagaacgtagaaattggttcgnn |
203 |
Q |
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| ||||||||||| |||||||||||| ||||||||| | ||| |||||||||||| |||||||| |||| ||||||||||| |||||||| | | |
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| T |
17807409 |
ttgctgaggctgttgcatctgcacctaacaaaggtacggcaaggtatgttatctacgtgaaaaagggaatctacaaagagaatgtagaaatcgctagttc |
17807508 |
T |
|
| Q |
204 |
nnnnncaaacgtgatgctcgttggtgatggaatggatgcaacaataatcacaggaaacttaaattttatcgatgggacaacgaccttcaaaagttcaact |
303 |
Q |
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| |||||||||||| | ||||| || ||||||||||| ||||||||||| | |||||||| | ||||| ||| |||||| ||| | ||||| |
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| T |
17807509 |
aaagacgaacgtgatgctcttgggtgacggtatggatgcaacgataatcacaggcagcttaaattacgttgatggaacaggcaccttccaaactgcaact |
17807608 |
T |
|
| Q |
304 |
gttggtatga |
313 |
Q |
| |
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|||||||||| |
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| T |
17807609 |
gttggtatga |
17807618 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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