View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1345_low_107 (Length: 411)
Name: NF1345_low_107
Description: NF1345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1345_low_107 |
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Alignment Details
Target: chr2 (Bit Score: 243; Significance: 1e-134; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 9 - 284
Target Start/End: Complemental strand, 40144896 - 40144625
Alignment:
| Q |
9 |
caagaatattcaccctcctttgtgttgaaggtggacttggtgttaatggcatctttattgcaacaaaatcatttgatgatgatgaacaagattcttctga |
108 |
Q |
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| T |
40144896 |
caagaaaattcaccctcctttgtgttgaaggtggacttggtgttaatggcatctttattgcaacaaaatcatttgatgatgatgaacaagattcttctga |
40144797 |
T |
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| Q |
109 |
tgacttgcagggtatttccatcaaaagattttccttcaacacataaatactataccttatgagaaaaatcataatttcataaattaagcaatgttttctt |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
40144796 |
tgacttgcagggtatttccatcaaaagattttccttcaacacataaatactataccttatgagaaaaatcataattttataaattaagcaatgttttctt |
40144697 |
T |
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| Q |
209 |
gcctattaattccttataatcatgattaattcaacatgttatcacagcaatataaataaatattgtaacatggcat |
284 |
Q |
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|||||||||||||||||||| |||| |||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
40144696 |
gcctattaattccttataataatgaataattcaacatgttatcacagcaatata----aatattgtaacatggcat |
40144625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 309 - 383
Target Start/End: Complemental strand, 40144599 - 40144525
Alignment:
| Q |
309 |
taccttgtgaactggaagagaaagtgttcttttacaagaagaaagttcatgatgatgttgtttttggttagaact |
383 |
Q |
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| T |
40144599 |
taccttgtgaactggaagagaaagtgttcttttacaagaagaaagttcatgatgatgttgtttttggttagaact |
40144525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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